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| Entry: PS01359 |
| General information about the entry | |
|---|---|
| Entry name | ZF_PHD_1 |
| Accession number | PS01359 |
| Entry type | PATTERN |
| Date | APR-2002 (CREATED); JAN-2003 (DATA UPDATE); MAR-2013 (INFO UPDATE). |
| PROSITE Documentation | PDOC50016 |
| Name and characterization of the entry | |
| Description | Zinc finger PHD-type signature. |
| Pattern | C-x(1,2)-C-x(5,45)-[VMFLWIE]-x-C-x(1,4)-C-x(1,4)-[WYFVQHLT]-H-x(2)-C- x(5,45)-[WFLYI]-x-C-x(2)-C. |
| Numerical results | |
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| Comments | |
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| Cross-references | |
| UniProtKB/Swiss-Prot | True positive hits:AF10_HUMAN (P55197), AF10_MOUSE (O54826), AF17_HUMAN (P55198), AIRE_HUMAN (O43918), AIRE_MOUSE (Q9Z0E3), ALFIN_MEDSA (Q40359), ALFL1_ARATH (Q9FFF5), ALFL1_ORYSI (A2Y0Q2), ALFL1_ORYSJ (Q75IR6), ALFL2_ARATH (Q9SRM4), ALFL2_ORYSI (B8B8I3), ALFL2_ORYSJ (Q8H383), ALFL3_ARATH (Q9M2B4), ALFL3_ORYSI (B8AMA8), ALFL3_ORYSJ (Q84TV4), ALFL4_ARATH (O81488), ALFL4_ORYSI (A2XTW9), ALFL4_ORYSJ (Q7XUW3), ALFL5_ARATH (Q5XEM9), ALFL5_ORYSI (A2Y4R8), ALFL5_ORYSJ (Q60DW3), ALFL6_ARATH (Q8S8M9), ALFL6_ORYSI (A2WXR5), ALFL6_ORYSJ (Q7F2Z1), ALFL7_ARATH (Q8LA16), ALFL7_ORYSI (B8ADZ3), ALFL7_ORYSJ (Q6Z7F4), ALFL8_ORYSI (B8BJV8), ALFL8_ORYSJ (Q2R837), ALFL9_ORYSI (B8B8C5), ALFL9_ORYSJ (Q6YTY3), ASH1L_HUMAN (Q9NR48), ASH1L_MOUSE (Q99MY8), ASH1_DROME (Q9VW15), ASH2_SCHPO (O60070), ASHR3_ARATH (Q949T8), ATG35_PICPG (C4QVX6), ATX1_ARATH (Q9C5X4), ATX2_ARATH (P0CB22), ATX3_ARATH (Q9M364), ATX4_ARATH (Q9SUE7), ATX5_ARATH (Q8GZ42), ATXR5_ARATH (Q8VZJ1), ATXR6_ARATH (Q9FNE9), BAZ1A_HUMAN (Q9NRL2), BAZ1A_MOUSE (O88379), BAZ1A_XENLA (Q8UVR5), BAZ1B_DANRE (A2BIL7), BAZ1B_HUMAN (Q9UIG0), BAZ1B_MOUSE (Q9Z277), BAZ1B_XENLA (A8DZJ1), BPTF_HUMAN (Q12830), BRD1_HUMAN (O95696), BRPF1_HUMAN (P55201), BRPF3_HUMAN (Q9ULD4), BYE1_CANGA (Q6FJ00), BYE1_DEBHA (Q6BNY5), BYE1_PICGU (A5DDB7), BYE1_SCHPO (Q9Y7V2), BYE1_YARLI (Q6C0K9), BYE1_YEAS7 (A6ZZW1), BYE1_YEAST (P36106), C3H19_ARATH (Q9SIV5), C3H44_ARATH (Q9SD34), CBP1_CAEEL (P34545), CHD3_CAEEL (Q22516), CHD3_DROME (O16102), CHD3_HUMAN (Q12873), CHD4_HUMAN (Q14839), CHD4_MOUSE (Q6PDQ2), CHD5_HUMAN (Q8TDI0), CHDM_DROME (O97159), CTI6_SCHPO (Q1MTR4), CTI6_YEAST (Q08923), CXXC1_BOVIN (Q5EA28), CXXC1_HUMAN (Q9P0U4), CXXC1_MOUSE (Q9CWW7), DIDO1_HUMAN (Q9BTC0), DIDO1_MOUSE (Q8C9B9), DPF1_CHICK (P58267), DPF1_HUMAN (Q92782), DPF1_MOUSE (Q9QX66), DPF1_RAT (P56163), DPF3_CHICK (P58270), DPF3_DANRE (A9LMC0), DPF3_HUMAN (Q92784), DPF3_MOUSE (P58269), ECM5_YEAST (Q03214), FXL19_HUMAN (Q6PCT2), FXL19_MOUSE (Q6PB97), G2E3_HUMAN (Q7L622), G2E3_MACFA (Q4R9C4), G2E3_MOUSE (Q5RJY2), HAC12_ARATH (Q9FWQ5), HAC1_ARATH (Q9C5X9), HAC2_ARATH (Q9FYH1), HAC4_ARATH (Q9LG11), HAC5_ARATH (Q9LE42), HACL1_ORYSJ (Q6YXY2), HACL3_ORYSJ (Q9XHY7), HAT31_ARATH (Q04996), HKNMT_PLAF7 (C6KTD2), HOP1_SCHPO (Q9P7P2), HOX1A_MAIZE (P46605), ING1_ARATH (Q9LIQ6), ING1_HUMAN (Q9UK53), ING1_MOUSE (Q9QXV3), ING1_SCHPO (O42871), ING2_HUMAN (Q9H160), ING2_MOUSE (Q9ESK4), ING2_SCHPO (O74736), ING3_CHICK (Q5ZK36), ING3_HUMAN (Q9NXR8), ING3_MOUSE (Q8VEK6), ING3_PONAB (Q5RBA1), ING3_RAT (Q498T3), ING3_XENLA (Q7ZX31), ING3_XENTR (Q66KD5), ING4_BOVIN (Q3T095), ING4_CHICK (Q5ZKY4), ING4_HUMAN (Q9UNL4), ING4_MOUSE (Q8C0D7), ING5_HUMAN (Q8WYH8), ING5_MOUSE (Q9D8Y8), INT12_BOVIN (Q32LL5), INT12_DANRE (Q6IQU7), INT12_HUMAN (Q96CB8), INT12_MACFA (Q8WNV2), INT12_MOUSE (Q9D168), INT12_PONAB (Q5RCV7), INT12_RAT (Q68FR3), INT12_XENLA (Q6DJM6), INT12_XENTR (Q0V9U1), JADE1_BOVIN (Q5E9T7), JADE1_DANRE (Q803A0), JADE1_HUMAN (Q6IE81), JADE1_MOUSE (Q6ZPI0), JADE1_XENLA (Q6GQJ2), JADE2_HUMAN (Q9NQC1), JADE2_MOUSE (Q6ZQF7), JADE3_DANRE (Q7ZVP1), JADE3_HUMAN (Q92613), JADE3_MOUSE (Q6IE82), JADE3_XENTR (Q0P4S5), JHD1_ASPFU (Q4WHB7), JHD1_CANAL (Q5A847), JHD1_CRYNB (P0CO41), JHD1_CRYNJ (P0CO40), JHD1_DEBHA (Q6BXJ4), JHD1_EMENI (Q5AW75), JHD1_USTMA (Q4P5U1), JHD2_YEAST (P47156), K1045_HUMAN (Q9UPV7), K1045_MOUSE (Q80TL4), K1045_PONAB (Q5R4R7), KAT6A_HUMAN (Q92794), KAT6A_MOUSE (Q8BZ21), KAT6A_RAT (Q5TKR9), KAT6B_HUMAN (Q8WYB5), KAT6B_MACFA (Q8WML3), KAT6B_MOUSE (Q8BRB7), KD5BB_DANRE (Q6IQX0), KDM2A_HUMAN (Q9Y2K7), KDM2A_MOUSE (P59997), KDM2A_XENTR (Q5U263), KDM5A_HUMAN (P29375), KDM5A_MOUSE (Q3UXZ9), KDM5B_CHICK (Q5F3R2), KDM5B_HUMAN (Q9UGL1), KDM5B_MOUSE (Q80Y84), KDM5C_CANFA (Q38JA7), KDM5C_HUMAN (P41229), KDM5C_MOUSE (P41230), KDM5C_PIG (A1YVX4), KDM5D_CANFA (Q30DN6), KDM5D_HUMAN (Q9BY66), KDM5D_MOUSE (Q62240), KDM5D_PANTR (Q5XUN4), KDM5_CAEBR (Q61T02), KDM5_CAEEL (Q23541), KDM5_DROME (Q9VMJ7), KDM7A_DANRE (Q5RHD1), KDM7B_DANRE (P0CF52), KDM7_CAEEL (Q9GYI0), KDM7_HUMAN (Q6ZMT4), KDM7_MOUSE (Q3UWM4), KDM7_XENTR (Q08D35), LE418_CAEEL (G5EBZ4), LID2_SCHPO (Q9HDV4), LIN49_CAEEL (Q20318), LIN59_CAEEL (O44757), LY10L_HUMAN (Q9H930), LY10_HUMAN (Q13342), MBD9_ARATH (Q9SGH2), MES4_DROME (Q8MT36), MIT1_SCHPO (Q9P793), MLL1_HUMAN (Q03164), MLL1_MOUSE (P55200), MLL2_HUMAN (O14686), MLL2_MOUSE (Q6PDK2), MLL3_HUMAN (Q8NEZ4), MLL3_MOUSE (Q8BRH4), MLL4_HUMAN (Q9UMN6), MLL4_MOUSE (O08550), MLL5_HUMAN (Q8IZD2), MLL5_MOUSE (Q3UG20), MLO2_SCHPO (Q09329), MMD1_ARATH (Q7X6Y7), MS1_ARATH (Q9FMS5), MSC1_SCHPO (Q9UT79), MTF2_HUMAN (Q9Y483), MTF2_MOUSE (Q02395), MTF2_PONAB (Q5R7T9), NFXL1_ARATH (Q9SY59), NFXL2_ARATH (Q9FFK8), NSD1_HUMAN (Q96L73), NSD1_MOUSE (O88491), NSD2_HUMAN (O96028), NSD2_MOUSE (Q8BVE8), NSD3_HUMAN (Q9BZ95), NSD3_MOUSE (Q6P2L6), NTO1_SCHPO (O74759), NTO1_YEAST (Q12311), NU301_CAEEL (Q6BER5), NU301_DROME (Q9W0T1), OBE1_ARATH (Q9S736), OBE2_ARATH (Q9LUB7), ORTH1_ARATH (Q9FKA7), ORTH2_ARATH (Q8VYZ0), ORTH3_ARATH (Q9FVS2), ORTH4_ARATH (Q9C8E1), ORTH5_ARATH (Q680I0), P20L1_HUMAN (A8MW92), P20L1_MOUSE (Q8CCJ9), P20L1_RAT (Q4V9H5), PCL_DROME (Q24459), PF21A_HUMAN (Q96BD5), PF21A_MOUSE (Q6ZPK0), PF23A_DANRE (Q5BJ10), PF23A_XENLA (Q5HZN9), PF23B_DANRE (Q7SXB5), PF23B_XENLA (Q0IHB0), PHF10_BOVIN (Q2T9V9), PHF10_DANRE (Q6NWE1), PHF10_HUMAN (Q8WUB8), PHF10_MOUSE (Q9D8M7), PHF10_RAT (Q4V7A6), PHF10_XENLA (Q63ZP1), PHF12_HUMAN (Q96QT6), PHF12_MOUSE (Q5SPL2), PHF14_HUMAN (O94880), PHF14_MOUSE (Q9D4H9), PHF19_HUMAN (Q5T6S3), PHF19_MOUSE (Q9CXG9), PHF1_HUMAN (O43189), PHF1_MOUSE (Q9Z1B8), PHF1_SCHPO (P87233), PHF20_HUMAN (Q9BVI0), PHF20_MOUSE (Q8BLG0), PHF23_XENTR (Q5U5E5), PHF2_DANRE (Q6P949), PHF2_DICLA (E6ZGB4), PHF2_HUMAN (O75151), PHF2_MOUSE (Q9WTU0), PHF2_SCHPO (Q09908), PHF3_HUMAN (Q92576), PHF8_DANRE (P0CH95), PHF8_HUMAN (Q9UPP1), PHF8_MOUSE (Q80TJ7), PHO23_YEAST (P50947), PHRF1_HUMAN (Q9P1Y6), PHRF1_MOUSE (A6H619), PHRF1_RAT (Q63625), PKCB1_HUMAN (Q9ULU4), PKL_ARATH (Q9S775), PRH_ARATH (P48785), PRH_PETCR (P48786), PVIP_NICBE (Q84N38), PVIP_PEA (Q84N37), PYGO1_HUMAN (Q9Y3Y4), PYGO1_MOUSE (Q9D0P5), PYGO2_HUMAN (Q9BRQ0), PYGO_DROME (Q9V9W8), RCO1_YEAST (Q04779), REQUA_XENLA (Q9W638), REQUB_XENLA (Q9W636), REQU_CHICK (P58268), REQU_HUMAN (Q92785), REQU_MOUSE (Q61103), RNO_DROME (Q7YZH1), RNO_DROPS (Q29EQ3), RSF1_HUMAN (Q96T23), SAYP_DROME (Q9VWF2), SET3_SCHPO (Q10362), SET3_YEAST (P36124), SET4_YEAST (P42948), SHPRH_HUMAN (Q149N8), SHPRH_MOUSE (Q7TPQ3), SIZ1_ARATH (Q680Q4), SIZ1_ORYSJ (Q6L4L4), SIZ2_ORYSJ (Q6ASW7), SNT2_SCHPO (Q10077), SNT2_YEAST (P53127), SP110_HUMAN (Q9HB58), SPP1_SCHPO (O74508), SPP1_YEAST (Q03012), TAF3_CHICK (Q5F489), TAF3_HUMAN (Q5VWG9), TAF3_MOUSE (Q5HZG4), TAF3_XENLA (Q5EAW9), TCF19_HUMAN (Q9Y242), TCF19_MACMU (Q5TM48), TCF19_PANTR (Q7YR48), TCF19_PIG (Q9TSV4), TIF1A_HUMAN (O15164), TIF1A_MOUSE (Q64127), TIF1B_HUMAN (Q13263), TIF1B_MOUSE (Q62318), TIF1B_RAT (O08629), TRI33_DANRE (Q6E2N3), TRI33_HUMAN (Q9UPN9), TRI33_MOUSE (Q99PP7), TRI33_XENLA (Q56R14), TRI66_HUMAN (O15016), TRI66_MOUSE (Q924W6), TRX_DROME (P20659), TRX_DROVI (Q24742), UBR7_DICDI (Q54DV0), UHRF1_BOVIN (A7E320), UHRF1_DANRE (E7EZF3), UHRF1_HUMAN (Q96T88), UHRF1_MOUSE (Q8VDF2), UHRF1_RAT (Q7TPK1), UHRF1_XENLA (B6CHA3), UHRF1_XENTR (F6UA42), UHRF2_HUMAN (Q96PU4), UHRF2_MOUSE (Q7TMI3), Y1342_ARATH (Q9C810), Y2181_ARATH (Q9ZUA9), Y3228_ARATH (Q5PNS0), Y7446_DROME (Q9W352), Y8158_DICDI (Q55FD6), YA27_SCHPO (Q09698), YAC5_SCHPO (Q09819), YM2A_CAEEL (P34447), YNG2_ASHGO (Q757W2), YNG2_CANAL (Q5AHB8), YNG2_CANGA (Q6FSB1), YNG2_DEBHA (Q6BNL6), YNG2_KLULA (Q6CXN0), YNG2_YARLI (Q6C5V7), YNG2_YEAST (P38806), YP99_CAEEL (Q09477), YQF7_SCHPO (O94400), ZMY11_HUMAN (Q15326), ZMY11_MOUSE (Q8R5C8)False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile): ARID4_ARATH (Q6NQ79), ASH2L_HUMAN (Q9UBL3), ASH2L_MOUSE (Q91X20), ASXL1_HUMAN (Q8IXJ9), ASXL1_MOUSE (P59598), ASXL2_CHICK (Q5ZM88), ASXL2_HUMAN (Q76L83), ASXL2_MOUSE (Q8BZ32), ASXL3_HUMAN (Q9C0F0), ASXL3_MOUSE (Q8C4A5), ASX_DROME (Q9V727), BAZ2A_HUMAN (Q9UIF9), BAZ2A_MOUSE (Q91YE5), BAZ2A_XENLA (B7ZS37), BAZ2B_CHICK (Q9DE13), BAZ2B_HUMAN (Q9UIF8), G2E3_CHICK (Q5F4A1), HACL2_ORYSJ (Q5Z8V7), ING2_ARATH (B3H615), JHD1_ASHGO (Q75AL5), JHD1_KLULA (Q6CIC9), JHD1_YARLI (Q6C423), JHD1_YEAST (P40034), KDM2B_HUMAN (Q8NHM5), KDM2B_MOUSE (Q6P1G2), KDM2B_XENLA (Q640I9), KDM4A_HUMAN (O75164), KDM4A_MOUSE (Q8BW72), KDM4A_PONAB (Q5RD88), KDM4B_HUMAN (O94953), KDM4B_MOUSE (Q91VY5), KDM4C_HUMAN (Q9H3R0), KDM4C_MOUSE (Q8VCD7), MES4_CAEEL (Q9NH52), OBE3_ARATH (Q94B71), OBE4_ARATH (Q84TI3), PF21B_HUMAN (Q96EK2), PF21B_MOUSE (Q8C966), PH11A_MOUSE (Q8BVM9), PH11L_RAT (Q5I0J8), PHF11_BOVIN (Q2HJ93), PHF11_HUMAN (Q9UIL8), PHF11_MOUSE (A6H5X4), PHF11_RAT (Q5I0E2), PHF13_HUMAN (Q86YI8), PHF13_MOUSE (Q8K2W6), PHF23_BOVIN (A5D962), PHF23_HUMAN (Q9BUL5), PHF23_MOUSE (Q8BSN5), PHF23_RAT (Q6AY75), PHF6_BOVIN (Q08DR0), PHF6_HUMAN (Q8IWS0), PHF6_MOUSE (Q9D4J7), PHF6_PONAB (Q5R5Z2), PHF7_HUMAN (Q9BWX1), PHF7_MOUSE (Q9DAG9), PHF7_RAT (Q6AXW4), RAG2_CHICK (P25022), RAG2_DANRE (O13034), RAG2_HUMAN (P55895), RAG2_MOUSE (P21784), RAG2_ONCMY (Q91193), RAG2_RABIT (P34089), RAG2_XENLA (Q91830), RAI1_HUMAN (Q7Z5J4), RAI1_MOUSE (Q61818), TCF20_HUMAN (Q9UGU0), TCF20_MOUSE (Q9EPQ8), UBR7_HUMAN (Q8N806), UBR7_MOUSE (Q8BU04), VIN3_ARATH (Q9FIE3), YNG1_YEAST (Q08465)False positive hits (sequences which do not belong to the set under consideration): ASR1_YEAST (Q06834), FAP1H_SCHPO (O74853), NFX1_BOVIN (A6QLA0), NFX1_DICDI (Q54BK0), NFX1_HUMAN (Q12986), NFX1_MOUSE (B1AY10), NFXL1_HUMAN (Q6ZNB6), NFXL1_XENLA (A0JMY5), STC_DROME (P40798)Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits: [Clustal format, color, condensed view]
[Clustal format, color]
[Clustal format, plain text]
[Fasta format]
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| PDB [Detailed view] |
1F62; 1FP0; 1MM2; 1MM3; 1WE9; 1WEE; 1WEM; 1WEN; 1WEP; 1WES; 1WEU; 1WEV; 1WEW; 1WIL; 1X4I; 1XWH; 2DX8; 2E6R; 2E6S; 2F6J; 2F6N; 2FSA; 2FUI; 2FUU; 2G6Q; 2K16; 2K17; 2K1J; 2KE1; 2KFT; 2KU3; 2KWJ; 2KWK; 2KWN; 2KWO; 2KYU; 2L43; 2L5U; 2L75; 2LGG; 2LGK; 2LGL; 2LN0; 2LRI; 2LV9; 2M1R; 2PNX; 2PUY; 2QIC; 2RI7; 2RO1; 2RSD; 2VNF; 2VP7; 2VPB; 2VPD; 2VPE; 2VPG; 2XB1; 2YQL; 2YSM; 2YT5; 2YYR; 3ASK; 3ASL; 3C6W; 3KQI; 3KV5; 3KV6; 3LQH; 3LQI; 3LQJ; 3N9L; 3N9M; 3N9N; 3N9O; 3N9P; 3N9Q; 3O33; 3O34; 3O35; 3O36; 3O37; 3PUQ; 3PUR; 3QZV; 3SHB; 3SOU; 3SOW; 3SOX; 3T6R; 3U5O; 3V43; 3ZVY; 3ZVZ; 4BBQ; 4GY5; |
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