Entry: PS50016

General information about the entry

Entry name [info] ZF_PHD_2
Accession [info] PS50016
Entry type [info] MATRIX
Date [info] APR-2002 (CREATED); OCT-2013 (DATA UPDATE); JUN-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC50016
Associated ProRule [info] PRU00146

Name and characterization of the entry

Description [info] Zinc finger PHD-type profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=54;
/DISJOINT: DEFINITION=PROTECT; N1=4; N2=51;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.4800000; R2=0.0089000; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=3553.5173340; R2=2.9350913; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=789; H_SCORE=5869; N_SCORE=8.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=565; H_SCORE=5212; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: D=-20; I=-20; B1=-100; E1=-100; MI=-105; MD=-105; IM=-105; DM=-105;
...
                A    B    C    D    E    F    G    H    I    K    L    M    N    P    Q    R    S    T    V    W    Y    Z
/I:         B1=0; BI=-105; BD=-105;
/M: SY='N'; M=  -6,  -2, -11,  -4,  -7, -14,  -8,  -8, -17,  -6, -16, -11,   1, -19,  -6,  -4,   0,  -2, -12, -25,  -8,  -7;
/M: SY='N'; M=  -4,  -7, -24, -10,  -8, -14, -15,  -8,  -7,  -2,  -9,  -4,  -4, -14,  -6,  -4,  -6,  -4,  -6, -20,  -6,  -8;
/M: SY='F'; M= -10, -19, -20, -23, -16,  17, -21, -12,   2, -16,   3,   3, -16, -23, -16, -13, -11,  -4,   2,  -9,  12, -16;
/M: SY='C'; M= -10, -20, 120, -30, -30, -20, -30, -30, -30, -30, -20, -20, -20, -40, -30, -30, -10, -10, -10, -50, -30, -30;
/I:         I=-6; MI=-32; MD=-32; IM=-32;
/M: SY='Y'; M=  -6,  -8, -11,  -8,  -5,  -2, -13,  -4,  -9,  -8,  -6,  -3,  -7, -10,  -6,  -7,  -5,  -5,  -9, -14,   2,  -6; D=-6;
/I:         DM=-32;
/M: SY='V'; M=  -6, -20, -21, -24, -17,   6, -27, -21,  12, -13,   7,   5, -17, -21, -17, -14, -12,  -4,  13, -18,   0, -18;
/M: SY='C'; M= -10, -20, 120, -30, -30, -20, -30, -30, -30, -30, -20, -20, -20, -40, -30, -30, -10, -10, -10, -50, -30, -30;
/M: SY='G'; M=  -5,   2, -19,  -1,  -5, -17,   6,  -8, -24,  -6, -19, -14,   6, -18,  -6,  -5,   1,  -8, -19, -26, -16,  -5;
/M: SY='E'; M=  -6,   2, -24,   4,   8, -23,  -9,  -6, -23,   5, -19, -11,   2, -12,   6,   6,   3,  -1, -18, -27, -14,   6;
/I:         MD=-15;
/M: SY='S'; M=  -1,  -2, -12,  -4,   1, -19,  -8, -11, -16,  -5, -17, -11,   0,  -5,  -3,  -8,   7,   4, -11, -29, -17,  -2; D=-2;
/I:         MD=-15;
/M: SY='D'; M=  -7,   1, -22,   3,   0, -13,  -6,  -3, -13,  -6, -10,  -9,   0, -15,  -5,  -5,  -3,  -6, -12, -18,  -3,  -4; D=-2;
/I:         MD=-15;
/M: SY='D'; M=  -6,   5, -17,   6,   6, -18,  -8,  -5, -17,   2, -15, -11,   4,  -7,   2,   0,  -1,  -6, -15, -22, -13,   4; D=-2;
/I:         MD=-15;
/M:         M=  -3,  -1, -16,   0,  -2, -10,  -1,  -8, -12,  -4, -12,  -8,  -1,  -3,  -4,  -7,  -1,  -3, -10, -10,  -8,  -3; D=-2;
/I:         I=-2; MI=0; IM=0; DM=-15;
/M: SY='D'; M=  -8,   6, -25,  12,   7, -23,  -6,  -2, -25,  -5, -21, -17,   2,  -2,  -2,  -9,   4,  -1, -20, -30, -14,   2;
/M: SY='G'; M=  -2,   7, -25,   8,   4, -26,  12,  -7, -27,  -5, -22, -17,   8, -14,  -4,  -8,   2,  -9, -21, -28, -20,   0;
/M: SY='E'; M=  -6,  -1, -23,   1,   4, -18, -16, -11, -18,  -1, -15, -12,  -3,   0,  -2,  -5,  -4,  -6, -16, -24, -14,   1;
/M: SY='L'; M= -10, -25, -14, -30, -22,  10, -27, -18,  14, -21,  18,  17, -21, -25, -17, -17, -18,  -7,   9, -14,   1, -20;
/M: SY='I'; M=  -8, -27, -21, -30, -22,   3, -30, -19,  24, -22,  21,  19, -25, -25, -18, -19, -20,  -9,  20, -15,  -1, -21;
/M: SY='Q'; M=  -7,  -9, -14, -11,  -1,  -8, -19,  -7, -11,  -8,  -8,  -5,  -7, -18,   4,  -7,  -1,  -1, -11, -20,  -1,   1;
/M: SY='C'; M= -10, -20, 120, -30, -30, -20, -30, -30, -30, -30, -20, -20, -20, -40, -30, -30, -10, -10, -10, -50, -30, -30;
/M: SY='D'; M=  -8,  22, -24,  28,  11, -32,  -4,  -2, -30,   0, -25, -20,  13, -12,   4,  -5,   1,  -8, -25, -32, -18,   7;
/I:         I=-8; MI=0; MD=-30; IM=0; DM=-30;
/M: SY='B'; M=  -7,   0, -21,   0,  -4, -16,  -4,  -8, -18,  -3, -13,  -9,  -1, -17,  -7,  -5,  -4,  -5, -13, -23,  -8,  -6;
/M: SY='C'; M= -10, -20, 120, -30, -30, -20, -30,-120, -30, -30, -20, -20, -20, -40, -30, -30, -10, -10, -10, -50, -30, -30;
/I:         MD=-29;
/M: SY='D'; M=  -9,   6, -20,   9,   3, -24,  -2,  -6, -26,   1, -22, -15,   4, -10,   1,  -1,  -2,  -9, -22, -25, -14,   1; D=-6;
/I:         I=-8; MI=-29; MD=-29; IM=-29; DM=-29;
/M: SY='R'; M= -12,   2, -25,   3,   6, -21, -17,   1, -22,  11, -18, -11,   3, -15,   7,  21,  -2,  -4, -17, -25,  -9,   5; D=-6;
/I:         DM=-29;
/M: SY='W'; M=  -2, -17, -30, -18, -14, -11,  -5, -17, -18,  -9, -20, -14, -14, -11, -11, -13,  -8, -10, -17,  29,  -3, -11;
/M: SY='F'; M= -14, -25, -21, -29, -23,  30, -24,  -9,   2, -19,   3,   2, -20, -28, -21, -16, -17, -10,   2,   7,  25, -21;
/M: SY='H'; M= -20,   0, -30,   0,   0, -20, -20, 100, -30, -10, -20,   0,  10, -20,  10,   0, -10, -20, -30, -30,  20,   0;
/M: SY='Q'; M=  -6, -11, -24, -12,  -3, -17, -16, -10,  -7,  -4,  -8,  -1,  -8,  -7,   4,  -2,  -3,  -3,  -8, -24, -11,  -1;
/M:         M=  -7,  -2, -24,  -3,  -1, -11, -15,  -6, -13,   0, -13,  -8,  -1, -16,  -4,  -4,  -3,  -3, -10, -21,  -3,  -3;
/M: SY='C'; M= -10, -20, 120, -30, -30, -20, -30, -30, -30, -30, -20, -20, -20, -40, -30, -30, -10, -10, -10, -50, -30, -30;
/M: SY='L'; M=  -3, -21, -16, -24, -16,   3, -25, -14,  10, -19,  15,   8, -20, -24, -16, -17, -13,  -3,  10, -18,   3, -17;
/M: SY='G'; M=  -5,  -3, -25,  -4,  -3, -23,   2, -10, -17,  -6, -15,  -7,   0, -11,   2,  -7,  -1,  -6, -16, -26, -16,  -1;
/M: SY='P'; M= -12, -11, -28, -10,  -7,  -6, -23,  -9,  -7,  -9,  -6,  -5, -10,   3, -11,  -9, -12,  -8,  -9, -19,  -7, -10;
/M: SY='P'; M=  -2,  -6, -25,  -6,  -1, -18, -10, -12, -17,  -5, -21, -14,  -3,   8,  -5,  -9,   3,   0, -16, -20, -14,  -4;
/M:         M=  -5,  -8, -25,  -7,  -2, -13, -14, -10, -11,  -3,  -8,  -5,  -8,  -7,  -4,  -6,  -8,  -8, -10, -21,  -7,  -4;
/M: SY='E'; M=  -8,  -4, -25,  -3,   4, -15, -20, -11, -11,   1, -10,  -8,  -3,  -7,  -3,   1,  -4,  -3,  -9, -26, -12,  -1;
/I:         I=-4; MI=0; MD=-15; IM=0;
/M: SY='S'; M=  -1,  -1, -11,   0,   1, -10,  -5,  -6,  -8,  -3,  -9,  -6,  -1,   1,  -2,  -5,   3,   1,  -7, -16,  -8,  -1; D=-1;
/I:         DM=-15;
/M:         M=  -2,  -5, -16,  -6,  -3, -10,  -7,  -9,  -6,  -4,  -5,  -4,  -4,  -6,  -2,  -5,  -4,  -4,  -7, -10,  -7,  -3; D=-1;
/I:         DM=-15;
/M: SY='A'; M=   1,  -4, -19,  -5,   0, -15, -10, -10, -10,  -3,  -7,  -5,  -5,  -8,  -3,  -5,  -3,  -4,  -8, -18, -11,  -2; D=-1;
/I:         DM=-15;
/M:         M=  -2,  -2, -22,  -2,  -2, -18, -13, -12,  -6,  -6, -11,  -7,  -2,   0,  -7, -11,  -3,  -5,  -6, -25, -15,  -6; D=-1;
/I:         DM=-15;
/M: SY='P'; M=  -6,  -9, -29,  -7,   1, -20, -12, -10, -17,  -1, -18, -11,  -7,   9,  -2,  -5,  -5,  -8, -18, -16, -13,  -2;
/M: SY='D'; M= -10,   5, -27,   9,   9, -22, -11,  -8, -23,   3, -20, -15,   3,  -1,   1,   0,   0,  -4, -21, -28, -16,   5;
/M: SY='G'; M=  -5,  -4, -24,  -3,   0, -17,   1, -10, -17,  -6, -15, -10,  -1, -16,  -5,  -5,   0,  -6, -12, -25, -14,  -3;
/M: SY='B'; M=  -6,  -2, -25,  -2,  -3, -21,  -4,  -8, -16,  -3, -15,  -8,  -2, -11,  -5,  -5,  -4,  -7, -12, -24, -14,  -4;
/M: SY='W'; M= -19, -33, -39, -35, -26,  25, -24, -20, -10, -19,  -8, -10, -30, -29, -21, -17, -31, -21, -18,  86,  32, -20;
/M: SY='L'; M=  -9, -18, -16, -21, -14,  -1, -25, -12,   2, -10,   3,   2, -14, -22,  -9,  -6,  -9,  -4,   2, -16,   3, -13;
/M: SY='C'; M= -10, -20, 120, -30, -30, -20, -30, -30, -30, -30, -20, -20, -20, -40, -30, -30, -10, -10, -10, -50, -30, -30;
/M: SY='P'; M=  -8,  -8, -29,  -7,  -1, -22, -13, -12, -16,  -1, -19, -12,  -6,  13,  -4,  -3,  -4,  -4, -15, -24, -17,  -5;
/M: SY='R'; M=  -7,  -6, -21,  -8,  -2, -12, -11,  -5, -15,   1, -10,  -7,  -2, -19,  -4,   5,  -7,  -8, -12, -22,  -7,  -4;
/M: SY='C'; M= -10, -19, 115, -29, -29, -20, -30, -26, -30, -29, -20, -19, -19, -39, -29, -29, -10, -10, -11, -49, -28, -29;
/M: SY='K'; M=  -5,   0, -22,   0,   1, -19, -15,  -9, -14,   2, -11,  -5,  -1, -15,   2,   1,  -1,   1, -10, -27, -12,   1;
/M: SY='K'; M=  -8,  -3, -14,  -6,   0, -15, -18,  -9, -15,   1, -17, -10,   1,  -6,  -3,   0,  -2,  -4, -14, -27, -12,  -2;
/M: SY='K'; M=  -5,  -7,  -4,  -9,  -1, -19, -17,  -6, -20,   2, -18,  -9,  -6, -12,  -2,   2,  -2,  -5, -13, -29, -13,  -3;
/I:         E1=0; IE=-105; DE=-105;
» more

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_07 which contains 551'705 sequence entries.


Total number of hits 427 in 323 different sequences
Number of true positive hits 422 in 318 different sequences
Number of 'unknown' hits 0
Number of false positive hits 5 in 5 different sequences
Number of false negative sequences 127
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 98.83 %
Recall (true positives / (true positives + false negatives)) 76.87 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] window20_shuffled
Author [info] K_Hofmann
Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 6
Feature key [info] ZN_FING
Feature description [info] PHD-type
Version [info] 4

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
318 sequences

AF10_HUMAN  (P55197    ), AF10_MOUSE  (O54826    ), AF17_HUMAN  (P55198    ), 
AIRE_HUMAN  (O43918    ), AIRE_MOUSE  (Q9Z0E3    ), ALFIN_MEDSA (Q40359    ), 
ALFL1_ARATH (Q9FFF5    ), ALFL1_ORYSI (A2Y0Q2    ), ALFL1_ORYSJ (Q75IR6    ), 
ALFL2_ARATH (Q9SRM4    ), ALFL2_ORYSI (B8B8I3    ), ALFL2_ORYSJ (Q8H383    ), 
ALFL3_ARATH (Q9M2B4    ), ALFL3_ORYSI (B8AMA8    ), ALFL3_ORYSJ (Q84TV4    ), 
ALFL4_ARATH (O81488    ), ALFL4_ORYSI (A2XTW9    ), ALFL4_ORYSJ (Q7XUW3    ), 
ALFL5_ARATH (Q5XEM9    ), ALFL5_ORYSI (A2Y4R8    ), ALFL5_ORYSJ (Q60DW3    ), 
ALFL6_ARATH (Q8S8M9    ), ALFL6_ORYSI (A2WXR5    ), ALFL6_ORYSJ (Q7F2Z1    ), 
ALFL7_ARATH (Q8LA16    ), ALFL7_ORYSI (B8ADZ3    ), ALFL7_ORYSJ (Q6Z7F4    ), 
ALFL8_ORYSI (B8BJV8    ), ALFL8_ORYSJ (Q2R837    ), ALFL9_ORYSI (B8B8C5    ), 
ALFL9_ORYSJ (Q6YTY3    ), ATG35_PICPG (C4QVX6    ), ATX1_ARATH  (Q9C5X4    ), 
ATX2_ARATH  (P0CB22    ), ATX3_ARATH  (Q9M364    ), ATX4_ARATH  (Q9SUE7    ), 
ATX5_ARATH  (Q8GZ42    ), ATXR5_ARATH (Q8VZJ1    ), ATXR5_RICCO (B9RU15    ), 
ATXR6_ARATH (Q9FNE9    ), BAZ1A_HUMAN (Q9NRL2    ), BAZ1A_MOUSE (O88379    ), 
BAZ1A_XENLA (Q8UVR5    ), BAZ1B_DANRE (A2BIL7    ), BAZ1B_HUMAN (Q9UIG0    ), 
BAZ1B_MOUSE (Q9Z277    ), BAZ1B_XENLA (A8DZJ1    ), BAZ2A_HUMAN (Q9UIF9    ), 
BAZ2A_MOUSE (Q91YE5    ), BAZ2A_XENLA (B7ZS37    ), BAZ2B_CHICK (Q9DE13    ), 
BAZ2B_HUMAN (Q9UIF8    ), BPTF_HUMAN  (Q12830    ), BRD1_HUMAN  (O95696    ), 
BRPF1_HUMAN (P55201    ), BRPF3_HUMAN (Q9ULD4    ), BYE1_CANGA  (Q6FJ00    ), 
BYE1_DEBHA  (Q6BNY5    ), BYE1_PICGU  (A5DDB7    ), BYE1_SCHPO  (Q9Y7V2    ), 
BYE1_YEAS7  (A6ZZW1    ), BYE1_YEAST  (P36106    ), C3H19_ARATH (Q9SIV5    ), 
C3H44_ARATH (Q9SD34    ), CHD3_CAEEL  (Q22516    ), CHD3_DROME  (O16102    ), 
CHD3_HUMAN  (Q12873    ), CHD4_HUMAN  (Q14839    ), CHD4_MOUSE  (Q6PDQ2    ), 
CHD5_HUMAN  (Q8TDI0    ), CHD5_MOUSE  (A2A8L1    ), CHD5_RAT    (D3ZD32    ), 
CHDM_DROME  (O97159    ), CHR4_ARATH  (F4KBP5    ), CTI6_YEAST  (Q08923    ), 
CXXC1_BOVIN (Q5EA28    ), CXXC1_DROME (Q9W352    ), CXXC1_HUMAN (Q9P0U4    ), 
CXXC1_MOUSE (Q9CWW7    ), DIDO1_HUMAN (Q9BTC0    ), DIDO1_MOUSE (Q8C9B9    ), 
DPF1_CHICK  (P58267    ), DPF1_HUMAN  (Q92782    ), DPF1_MOUSE  (Q9QX66    ), 
DPF1_RAT    (P56163    ), DPF3_CHICK  (P58270    ), DPF3_DANRE  (A9LMC0    ), 
DPF3_HUMAN  (Q92784    ), DPF3_MOUSE  (P58269    ), DPFF1_CAEEL (Q09477    ), 
EBS_ARATH   (F4JL28    ), ECM5_YEAST  (Q03214    ), FXL19_HUMAN (Q6PCT2    ), 
FXL19_MOUSE (Q6PB97    ), HAT31_ARATH (Q04996    ), HOX1A_MAIZE (P46605    ), 
IDM1_ARATH  (F4IXE7    ), ING1_ARATH  (Q9LIQ6    ), ING1_HUMAN  (Q9UK53    ), 
ING1_MOUSE  (Q9QXV3    ), ING1_SCHPO  (O42871    ), ING2_ARATH  (B3H615    ), 
ING2_HUMAN  (Q9H160    ), ING2_MOUSE  (Q9ESK4    ), ING2_SCHPO  (O74736    ), 
ING3_CHICK  (Q5ZK36    ), ING3_HUMAN  (Q9NXR8    ), ING3_MOUSE  (Q8VEK6    ), 
ING3_PONAB  (Q5RBA1    ), ING3_RAT    (Q498T3    ), ING3_XENLA  (Q7ZX31    ), 
ING3_XENTR  (Q66KD5    ), ING4_BOVIN  (Q3T095    ), ING4_CHICK  (Q5ZKY4    ), 
ING4_HUMAN  (Q9UNL4    ), ING4_MOUSE  (Q8C0D7    ), ING5_HUMAN  (Q8WYH8    ), 
ING5_MOUSE  (Q9D8Y8    ), INT12_BOVIN (Q32LL5    ), INT12_DANRE (Q6IQU7    ), 
INT12_HUMAN (Q96CB8    ), INT12_MACFA (Q8WNV2    ), INT12_MOUSE (Q9D168    ), 
INT12_PONAB (Q5RCV7    ), INT12_RAT   (Q68FR3    ), INT12_XENLA (Q6DJM6    ), 
INT12_XENTR (Q0V9U1    ), JADE1_BOVIN (Q5E9T7    ), JADE1_DANRE (Q803A0    ), 
JADE1_HUMAN (Q6IE81    ), JADE1_MOUSE (Q6ZPI0    ), JADE1_XENLA (Q6GQJ2    ), 
JADE2_HUMAN (Q9NQC1    ), JADE2_MOUSE (Q6ZQF7    ), JADE3_DANRE (Q7ZVP1    ), 
JADE3_HUMAN (Q92613    ), JADE3_MOUSE (Q6IE82    ), JADE3_XENTR (Q0P4S5    ), 
JHD1_ASPFU  (Q4WHB7    ), JHD1_CANAL  (Q5A847    ), JHD1_DEBHA  (Q6BXJ4    ), 
JHD1_EMENI  (Q5AW75    ), JHD1_YARLI  (Q6C423    ), JHD2_YEAST  (P47156    ), 
KAT6A_HUMAN (Q92794    ), KAT6A_MOUSE (Q8BZ21    ), KAT6A_RAT   (Q5TKR9    ), 
KAT6B_HUMAN (Q8WYB5    ), KAT6B_MACFA (Q8WML3    ), KAT6B_MOUSE (Q8BRB7    ), 
KD5BB_DANRE (Q6IQX0    ), KDM2A_HUMAN (Q9Y2K7    ), KDM2A_MOUSE (P59997    ), 
KDM2A_XENTR (Q5U263    ), KDM2B_HUMAN (Q8NHM5    ), KDM2B_MOUSE (Q6P1G2    ), 
KDM2B_XENLA (Q640I9    ), KDM5A_HUMAN (P29375    ), KDM5A_MOUSE (Q3UXZ9    ), 
KDM5B_CHICK (Q5F3R2    ), KDM5B_HUMAN (Q9UGL1    ), KDM5B_MOUSE (Q80Y84    ), 
KDM5C_CANLF (Q38JA7    ), KDM5C_HUMAN (P41229    ), KDM5C_MOUSE (P41230    ), 
KDM5C_PIG   (A1YVX4    ), KDM5D_CANLF (Q30DN6    ), KDM5D_HUMAN (Q9BY66    ), 
KDM5D_MOUSE (Q62240    ), KDM5D_PANTR (Q5XUN4    ), KDM5_CAEBR  (Q61T02    ), 
KDM5_CAEEL  (Q23541    ), KDM5_DROME  (Q9VMJ7    ), KDM7A_DANRE (Q5RHD1    ), 
KDM7A_HUMAN (Q6ZMT4    ), KDM7A_MOUSE (Q3UWM4    ), KDM7A_XENTR (Q08D35    ), 
KDM7B_DANRE (P0CF52    ), KMT2A_HUMAN (Q03164    ), KMT2A_MOUSE (P55200    ), 
KMT2B_HUMAN (Q9UMN6    ), KMT2B_MOUSE (O08550    ), KMT2C_HUMAN (Q8NEZ4    ), 
KMT2C_MOUSE (Q8BRH4    ), KMT2D_HUMAN (O14686    ), KMT2D_MOUSE (Q6PDK2    ), 
KMT2E_HUMAN (Q8IZD2    ), KMT2E_MOUSE (Q3UG20    ), LE418_CAEEL (G5EBZ4    ), 
LID2_SCHPO  (Q9HDV4    ), LIN49_CAEEL (Q20318    ), LIN59_CAEEL (O44757    ), 
MBD9_ARATH  (Q9SGH2    ), MES4_DROME  (Q8MT36    ), MIT1_SCHPO  (Q9P793    ), 
MLO2_SCHPO  (Q09329    ), MSC1_SCHPO  (Q9UT79    ), MTF2_HUMAN  (Q9Y483    ), 
MTF2_MOUSE  (Q02395    ), MTF2_PONAB  (Q5R7T9    ), NFXL1_ARATH (Q9SY59    ), 
NSD1_HUMAN  (Q96L73    ), NSD1_MOUSE  (O88491    ), NSD2_HUMAN  (O96028    ), 
NSD2_MOUSE  (Q8BVE8    ), NSD3_HUMAN  (Q9BZ95    ), NSD3_MOUSE  (Q6P2L6    ), 
NTO1_SCHPO  (O74759    ), NTO1_YEAST  (Q12311    ), NU301_CAEEL (Q6BER5    ), 
NU301_DROME (Q9W0T1    ), ORC1A_ARATH (Q710E8    ), ORC1B_ARATH (Q9SU24    ), 
ORC1_ORYSJ  (Q5SMU7    ), ORTH2_ARATH (Q8VYZ0    ), PCL_DROME   (Q24459    ), 
PF21A_HUMAN (Q96BD5    ), PF21A_MOUSE (Q6ZPK0    ), PF21B_HUMAN (Q96EK2    ), 
PF21B_MOUSE (Q8C966    ), PHF10_BOVIN (Q2T9V9    ), PHF10_DANRE (Q6NWE1    ), 
PHF10_HUMAN (Q8WUB8    ), PHF10_MOUSE (Q9D8M7    ), PHF10_RAT   (Q4V7A6    ), 
PHF10_XENLA (Q63ZP1    ), PHF12_HUMAN (Q96QT6    ), PHF12_MOUSE (Q5SPL2    ), 
PHF14_HUMAN (O94880    ), PHF14_MOUSE (Q9D4H9    ), PHF19_MOUSE (Q9CXG9    ), 
PHF1_HUMAN  (O43189    ), PHF1_MOUSE  (Q9Z1B8    ), PHF1_SCHPO  (P87233    ), 
PHF2_DANRE  (Q6P949    ), PHF2_DICLA  (E6ZGB4    ), PHF2_HUMAN  (O75151    ), 
PHF2_MOUSE  (Q9WTU0    ), PHF2_SCHPO  (Q09908    ), PHF3_HUMAN  (Q92576    ), 
PHF8_DANRE  (P0CH95    ), PHF8_HUMAN  (Q9UPP1    ), PHF8_MOUSE  (Q80TJ7    ), 
PHO23_YEAST (P50947    ), PHRF1_HUMAN (Q9P1Y6    ), PHRF1_MOUSE (A6H619    ), 
PHRF1_RAT   (Q63625    ), PKCB1_HUMAN (Q9ULU4    ), PKL_ARATH   (Q9S775    ), 
PRH_ARATH   (P48785    ), PRH_PETCR   (P48786    ), PTM_ARATH   (F4JYC8    ), 
PYGO1_HUMAN (Q9Y3Y4    ), PYGO1_MOUSE (Q9D0P5    ), PYGO2_HUMAN (Q9BRQ0    ), 
PYGO_DROME  (Q9V9W8    ), RCO1_YEAST  (Q04779    ), REQUA_XENLA (Q9W638    ), 
REQUB_XENLA (Q9W636    ), REQU_CHICK  (P58268    ), REQU_HUMAN  (Q92785    ), 
REQU_MOUSE  (Q61103    ), RNO_DROME   (Q7YZH1    ), RNO_DROPS   (Q29EQ3    ), 
RSF1_HUMAN  (Q96T23    ), SAYP_DROME  (Q9VWF2    ), SET1_PLAF7  (C6KTD2    ), 
SET3_YEAST  (P36124    ), SET4_YEAST  (P42948    ), SHL_ARATH   (Q9FEN9    ), 
SNT2_YEAST  (P53127    ), SP110_HUMAN (Q9HB58    ), SP140_HUMAN (Q13342    ), 
SP14L_HUMAN (Q9H930    ), SPP1_SCHPO  (O74508    ), SPP1_YEAST  (Q03012    ), 
TAF3_CHICK  (Q5F489    ), TAF3_HUMAN  (Q5VWG9    ), TAF3_MOUSE  (Q5HZG4    ), 
TAF3_XENLA  (Q5EAW9    ), TIF1A_HUMAN (O15164    ), TIF1A_MOUSE (Q64127    ), 
TIF1B_HUMAN (Q13263    ), TIF1B_MOUSE (Q62318    ), TIF1B_RAT   (O08629    ), 
TRI33_DANRE (Q6E2N3    ), TRI33_HUMAN (Q9UPN9    ), TRI33_MOUSE (Q99PP7    ), 
TRI33_XENLA (Q56R14    ), TRI66_HUMAN (O15016    ), TRI66_MOUSE (Q924W6    ), 
TRX_DROME   (P20659    ), TRX_DROVI   (Q24742    ), UBR7_DICDI  (Q54DV0    ), 
UHRF1_BOVIN (A7E320    ), UHRF1_DANRE (E7EZF3    ), UHRF1_HUMAN (Q96T88    ), 
UHRF1_MOUSE (Q8VDF2    ), UHRF1_RAT   (Q7TPK1    ), UHRF1_XENLA (B6CHA3    ), 
UHRF1_XENTR (F6UA42    ), UHRF2_HUMAN (Q96PU4    ), UHRF2_MOUSE (Q7TMI3    ), 
Y3228_ARATH (Q5PNS0    ), Y8158_DICDI (Q55FD6    ), YA27_SCHPO  (Q09698    ), 
YAC5_SCHPO  (Q09819    ), YM2A_CAEEL  (P34447    ), YNG2_ASHGO  (Q757W2    ), 
YNG2_CANAL  (Q5AHB8    ), YNG2_CANGA  (Q6FSB1    ), YNG2_DEBHA  (Q6BNL6    ), 
YNG2_KLULA  (Q6CXN0    ), YNG2_YARLI  (Q6C5V7    ), YNG2_YEAST  (P38806    ), 
YQF7_SCHPO  (O94400    ), ZMY11_HUMAN (Q15326    ), ZMY11_MOUSE (Q8R5C8    )
» more

UniProtKB/Swiss-Prot
False negative sequences
127 sequences

ARID4_ARATH (Q6NQ79    ), ASH1L_HUMAN (Q9NR48    ), ASH1L_MOUSE (Q99MY8    ), 
ASH1_DROME  (Q9VW15    ), ASH2L_HUMAN (Q9UBL3    ), ASH2L_MOUSE (Q91X20    ), 
ASH2_DROME  (Q94545    ), ASH2_SCHPO  (O60070    ), ASHR3_ARATH (Q949T8    ), 
ASXL1_HUMAN (Q8IXJ9    ), ASXL1_MOUSE (P59598    ), ASXL2_CHICK (Q5ZM88    ), 
ASXL2_HUMAN (Q76L83    ), ASXL2_MOUSE (Q8BZ32    ), ASXL3_HUMAN (Q9C0F0    ), 
ASXL3_MOUSE (Q8C4A5    ), ASX_DROME   (Q9V727    ), BYE1_YARLI  (Q6C0K9    ), 
CTI6_SCHPO  (Q1MTR4    ), EBSL_ARATH  (F4JGB7    ), EDM2_ARATH  (F4K3G5    ), 
G2E3_CHICK  (Q5F4A1    ), G2E3_HUMAN  (Q7L622    ), G2E3_MACFA  (Q4R9C4    ), 
G2E3_MOUSE  (Q5RJY2    ), HAC12_ARATH (Q9FWQ5    ), HAC1_ARATH  (Q9C5X9    ), 
HAC2_ARATH  (Q9FYH1    ), HAC4_ARATH  (Q9LG11    ), HAC5_ARATH  (Q9LE42    ), 
HACL1_ORYSJ (Q6YXY2    ), HACL2_ORYSJ (Q5Z8V7    ), HACL3_ORYSJ (Q9XHY7    ), 
HOP1_SCHPO  (Q9P7P2    ), JHD1_ASHGO  (Q75AL5    ), JHD1_CRYNB  (P0CO41    ), 
JHD1_CRYNJ  (P0CO40    ), JHD1_KLULA  (Q6CIC9    ), JHD1_USTMA  (Q4P5U1    ), 
JHD1_YEAST  (P40034    ), KDM4A_HUMAN (O75164    ), KDM4A_MOUSE (Q8BW72    ), 
KDM4A_PONAB (Q5RD88    ), KDM4B_HUMAN (O94953    ), KDM4B_MOUSE (Q91VY5    ), 
KDM4C_HUMAN (Q9H3R0    ), KDM4C_MOUSE (Q8VCD7    ), KDM7_CAEEL  (Q9GYI0    ), 
MES4_CAEEL  (Q9NH52    ), MMD1_ARATH  (Q7X6Y7    ), MS1_ARATH   (Q9FMS5    ), 
OBE1_ARATH  (Q9S736    ), OBE2_ARATH  (Q9LUB7    ), OBE3_ARATH  (Q94B71    ), 
OBE4_ARATH  (Q84TI3    ), ORTH1_ARATH (Q9FKA7    ), ORTH3_ARATH (Q9FVS2    ), 
ORTH4_ARATH (Q9C8E1    ), ORTH5_ARATH (Q680I0    ), P20L1_HUMAN (A8MW92    ), 
P20L1_MOUSE (Q8CCJ9    ), P20L1_RAT   (Q4V9H5    ), PF23A_DANRE (Q5BJ10    ), 
PF23A_XENLA (Q5HZN9    ), PF23B_DANRE (Q7SXB5    ), PF23B_XENLA (Q0IHB0    ), 
PH11A_MOUSE (Q8BVM9    ), PH11L_RAT   (Q5I0J8    ), PHF11_BOVIN (Q2HJ93    ), 
PHF11_HUMAN (Q9UIL8    ), PHF11_MOUSE (A6H5X4    ), PHF11_RAT   (Q5I0E2    ), 
PHF13_HUMAN (Q86YI8    ), PHF13_MOUSE (Q8K2W6    ), PHF19_HUMAN (Q5T6S3    ), 
PHF20_HUMAN (Q9BVI0    ), PHF20_MOUSE (Q8BLG0    ), PHF23_BOVIN (A5D962    ), 
PHF23_HUMAN (Q9BUL5    ), PHF23_MOUSE (Q8BSN5    ), PHF23_RAT   (Q6AY75    ), 
PHF23_XENTR (Q5U5E5    ), PHF24_HUMAN (Q9UPV7    ), PHF24_MOUSE (Q80TL4    ), 
PHF24_PONAB (Q5R4R7    ), PHF6_BOVIN  (Q08DR0    ), PHF6_HUMAN  (Q8IWS0    ), 
PHF6_MOUSE  (Q9D4J7    ), PHF6_PONAB  (Q5R5Z2    ), PHF7_HUMAN  (Q9BWX1    ), 
PHF7_MOUSE  (Q9DAG9    ), PHF7_RAT    (Q6AXW4    ), PTC1_ORYSJ  (Q67V61    ), 
PVIP_NICBE  (Q84N38    ), PVIP_PEA    (Q84N37    ), RAG2_CHICK  (P25022    ), 
RAG2_DANRE  (O13034    ), RAG2_HUMAN  (P55895    ), RAG2_MOUSE  (P21784    ), 
RAG2_ONCMY  (Q91193    ), RAG2_RABIT  (P34089    ), RAG2_XENLA  (Q91830    ), 
RAI1_HUMAN  (Q7Z5J4    ), RAI1_MOUSE  (Q61818    ), SET3_SCHPO  (Q10362    ), 
SETVS_PLAF7 (Q8IE95    ), SHPRH_HUMAN (Q149N8    ), SHPRH_MOUSE (Q7TPQ3    ), 
SIZ1_ARATH  (Q680Q4    ), SIZ1_ORYSJ  (Q6L4L4    ), SIZ2_ORYSJ  (Q6ASW7    ), 
SNT2_SCHPO  (Q10077    ), TCF19_HUMAN (Q9Y242    ), TCF19_MACMU (Q5TM48    ), 
TCF19_PANTR (Q7YR48    ), TCF19_PIG   (Q9TSV4    ), TCF20_HUMAN (Q9UGU0    ), 
TCF20_MOUSE (Q9EPQ8    ), UBR7_HUMAN  (Q8N806    ), UBR7_MOUSE  (Q8BU04    ), 
VIL1_ARATH  (Q9LHF5    ), VIL2_ARATH  (Q9SUM4    ), VIL3_ARATH  (Q5BPT4    ), 
VIN3_ARATH  (Q9FIE3    ), Y1342_ARATH (Q9C810    ), Y2181_ARATH (Q9ZUA9    ), 
YNG1_YEAST  (Q08465    )
» more

UniProtKB/Swiss-Prot
False positive sequences
5 sequences

FAP1H_SCHPO (O74853    ), NFX1_BOVIN  (A6QLA0    ), NFX1_DICDI  (Q54BK0    ), 
NFX1_HUMAN  (Q12986    ), NFX1_MOUSE  (B1AY10    )
» more

PDB
[Detailed view]
134 PDB

1F62; 1FP0; 1MM2; 1MM3; 1WE9; 1WEM; 1WEN; 1WEP; 1WES; 1WEU; 1WEV; 1X4I; 1XWH; 2DX8; 2E6R; 2E6S; 2F6J; 2F6N; 2FSA; 2FUI; 2FUU; 2G6Q; 2K16; 2K17; 2K1J; 2KE1; 2KFT; 2KGG; 2KGI; 2KU3; 2KWJ; 2KWK; 2KWN; 2KWO; 2KYU; 2L43; 2L5U; 2L75; 2LGG; 2LGK; 2LGL; 2LN0; 2LV9; 2M1R; 2M3H; 2MA5; 2MD7; 2MD8; 2MIQ; 2MNY; 2MNZ; 2MUM; 2PNX; 2PUY; 2QIC; 2RI7; 2RO1; 2VNF; 2VP7; 2VPB; 2VPD; 2VPE; 2VPG; 2XB1; 2YQL; 2YSM; 2YT5; 2YYR; 3ASK; 3ASL; 3C6W; 3GL6; 3KQI; 3KV4; 3KV5; 3KV6; 3LQH; 3LQI; 3LQJ; 3O33; 3O34; 3O35; 3O36; 3O37; 3QZV; 3SHB; 3SOU; 3SOW; 3SOX; 3T6R; 3U5M; 3U5N; 3U5O; 3U5P; 3V43; 3ZPV; 3ZVY; 3ZVZ; 4BBQ; 4COS; 4GND; 4GNE; 4GNF; 4GNG; 4GY5; 4L58; 4L7X; 4LJN; 4LK9; 4LKA; 4LLB; 4O64; 4Q6F; 4QF2; 4QF3; 4TVR; 4UP0; 4UP5; 4YAB; 4YAD; 4YAT; 4YAX; 4YBM; 4YBS; 4YBT; 4YC9; 4ZQL; 5C11; 5C13; 5DAG; 5DAH; 5ERC; 5HH7; 5I3L
» more

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