PROSITE entry PS50108
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General information about the entry
Entry name [info] | CRIB |
Accession [info] | PS50108 |
Entry type [info] | MATRIX |
Date [info] |
01-DEC-2001 CREATED;
10-MAY-2017 DATA UPDATE; 24-JAN-2024 INFO UPDATE. |
PROSITE Doc. [info] | PDOC50108 |
Associated ProRule [info] | PRU00057 |
Name and characterization of the entry
Description [info] | CRIB domain profile. |
Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=14; /DISJOINT: DEFINITION=PROTECT; N1=2; N2=13; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=-0.2255000; R2=0.0176662; TEXT='NScore'; /NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=419.6926270; R2=0.3792415; PRIORITY=1; TEXT='Heuristic 5.0%'; /CUT_OFF: LEVEL=0; SCORE=421; H_SCORE=579; N_SCORE=7.2; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=381; H_SCORE=564; N_SCORE=6.5; MODE=1; TEXT='?'; /DEFAULT: M0=-9; D=-20; I=-20; B1=-60; E1=-60; MI=-105; MD=-105; IM=-105; DM=-105; ... A B C D E F G H I K L M N P Q R S T V W Y Z /I: B1=0; BI=-105; BD=-105; /M: SY='I'; M= -7,-30,-25,-37,-30, 0,-37,-30, 45,-27, 17, 17,-23,-23,-23,-27,-17, -7, 35,-23, -3,-30; /M: SY='G'; M= 6, -4,-18, -4, -8,-24, 27,-14,-28,-14,-30,-20, 6,-14, -8,-14, 25, 5,-18,-32,-24, -8; /M: SY='S'; M= 4, -4,-19, -8, -4,-14, -9, -6,-13, -9,-13, -9, 1, -9, -4,-10, 6, 5,-11,-26,-11, -5; /M: SY='P'; M= -9,-19,-39,-10, 0,-30,-19,-20,-20,-10,-30,-20,-19, 87,-10,-20, -8, -9,-29,-30,-30,-10; /M: SY='T'; M= -4,-11,-15,-17,-13, 8,-19,-15, -5,-15, -4, -3, -6,-17,-12,-12, 7, 18, -1,-21, -1,-11; /I: I=-6; MI=0; MD=-32; IM=0; DM=-32; /M: SY='N'; M=-12, 39,-23, 31, 4,-26, 2, 4,-27, -2,-30,-23, 43,-17, -2, -4, 7, -4,-30,-38,-21, 1; /M: SY='F'; M=-13,-29,-19,-35,-27, 50,-29,-21, 6,-26, 9, 2,-22,-24,-34,-20,-17, -8, 10, -2, 18,-28; /M: SY='K'; M= -9, -1,-26, -1, 12,-25,-20, -7,-20, 22,-20, -8, -1,-12, 11, 18, -4, -5,-14,-24,-12, 11; /M: SY='H'; M=-20, -1,-30, -1, 0,-19,-20, 91,-29, -7,-20, -1, 9,-20, 10, 5,-10,-19,-29,-28, 19, 0; /M: SY='T'; M= -7, -6,-21, -9, -5,-13,-23, -9, -2, -6, -4, -2, -5,-17, -4, -4, -3, 4, 1,-27, -8, -6; /M: SY='V'; M= 3,-20,-14,-25,-21, -2,-17,-19, 11,-18, 1, 5,-16,-21,-18,-19, -3, 0, 17,-23, -6,-20; /M: SY='H'; M=-20, 0,-30, 0, 0,-20,-20,100,-30,-10,-20, 0, 10,-20, 10, 0,-10,-20,-30,-30, 20, 0; /M: SY='V'; M= -2,-27,-15,-31,-28, -1,-30,-28, 31,-21, 11, 13,-25,-26,-25,-21,-11, 0, 40,-27, -7,-27; /M: SY='G'; M= -1, -2,-27, -3,-15,-29, 54,-15,-36,-16,-30,-20, 8,-19,-16,-17, 4,-14,-28,-24,-28,-15; /I: E1=0; IE=-105; DE=-105;» more |
Numerical results [info]
Total number of hits | 127 in 127 different sequences |
Number of true positive hits | 127 in 127 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 0 |
Number of false negative sequences | 4 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 100.00 % |
Recall (true positives / (true positives + false negatives)) | 96.95 % |
Comments [info]
Matrix type [info] | protein_domain |
Scaling database [info] | reversed |
Author [info] | CJA_Sigrist |
Taxonomic range [info] | Eukaryotes |
Maximum number of repetitions [info] | 1 |
Feature key [info] | DOMAIN |
Feature description [info] | CRIB |
Version [info] | 5 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
127 sequences
ACKL_DROME (Q9I7F7), ARK1_CAEEL (G5EBZ8), BORG1_BOVIN (Q08DN6), BORG1_HUMAN (O14613), BORG1_MOUSE (Q8JZX9), BORG1_RAT (Q5PQP4), BORG2_HUMAN (Q9UKI2), BORG2_MOUSE (Q9CQC5), BORG3_HUMAN (Q6NZY7), BORG3_MOUSE (Q9Z0X0), BORG4_HUMAN (Q9H3Q1), BORG4_MOUSE (Q9JM96), BORG5_BOVIN (Q17QW1), BORG5_HUMAN (Q00587), BORG5_MOUSE (Q91W92), BORG5_RAT (A1A5P0), C42ES_DROME (Q9VNE7), C42S1_BOVIN (Q5BIS3), C42S1_CHICK (Q5ZKB1), C42S1_DANRE (Q6TEL3), C42S1_HUMAN (Q9NRR8), C42S1_MOUSE (Q8BHL7), C42S1_PONAB (Q5RDD6), C42S1_RAT (Q5BJM7), C42S1_XENTR (Q5BKH3), C42S2_BOVIN (A6QLJ4), C42S2_DANRE (A9JR56), C42S2_HUMAN (Q9NRR3), C42S2_MOUSE (Q8BGH7), C42S2_PONAB (Q5R4F8), C42S2_RAT (A1L1K4), C4S1A_XENLA (Q66KZ1), C4S1B_XENLA (Q6GPV4), C4S2A_XENLA (Q5FVD7), C4S2A_XENTR (Q28EW5), C4S2B_XENLA (Q6AX78), C4S2B_XENTR (Q28GG3), C4S2C_XENLA (Q4V853), CLA4_CANAL (Q5APR8), CLA4_CANAX (O14427), CLA4_EREGS (Q9HFW2), CLA4_YEAST (P48562), GEK_DROME (Q9W1B0), GIC1_YEAST (P38785), GIC2_YEAST (Q06648), MAX2_CAEEL (G5EGQ3), MRCKA_HUMAN (Q5VT25), MRCKA_MOUSE (Q3UU96), MRCKA_RAT (O54874), MRCKB_HUMAN (Q9Y5S2), MRCKB_MOUSE (Q7TT50), MRCKB_RAT (Q7TT49), MRCKG_HUMAN (Q6DT37), MRCKG_MOUSE (Q80UW5), MRCK_CAEEL (O01583), PAK1_BOVIN (Q08E52), PAK1_HUMAN (Q13153), PAK1_MOUSE (O88643), PAK1_RAT(P35465), PAK2_HUMAN (Q13177), PAK2_MOUSE (Q8CIN4), PAK2_RABIT (Q29502), PAK2_RAT(Q64303), PAK3_HUMAN (O75914), PAK3_MOUSE (Q61036), PAK3_PANTR (Q7YQL4), PAK3_PONPY (Q7YQL3), PAK3_RAT(Q62829), PAK3_XENLA (Q8AXB4), PAK4_HUMAN (O96013), PAK4_MOUSE (Q8BTW9), PAK5_HUMAN (Q9P286), PAK5_MOUSE (Q8C015), PAK5_RAT(D4A280), PAK6_HUMAN (Q9NQU5), PAK6_MOUSE (Q3ULB5), PAK6_PONAB (Q5R8Z4), PAKA_DICDI (Q55D99), PAKB_DICDI (Q869N2), PAKC_DICDI (Q55GV3), PAKD_DICDI (Q55DD4), PAKG_DICDI (Q54RV3), PAKM_DROME (Q9VXE5), PAK_DROME (Q9VI13), PK1_CAEEL (Q17850), PK2_CAEEL (G5EFU0), RGAP1_ARATH (Q9FMR1), RGAP2_ARATH (F4JI46), RGAP4_ARATH (Q9CAX8), RGAP5_ARATH (Q6NKT5), RIC10_ARATH (Q9M0Y9), RIC11_ARATH (Q0WL69), RIC1_ARATH (F4IVV0), RIC2_ARATH (Q8GYU0), RIC3_ARATH (F4I5N6), RIC4_ARATH (Q9FFD5), RIC5_ARATH (F4J424), RIC6_ARATH (Q1PF35), RIC7_ARATH (Q1G3K8), RIC8_ARATH (Q9ZWB8), RIC9_ARATH (Q1G3Y0), SHK2_SCHPO (Q10056), SKM1_YEAST (Q12469), STE20_ASPFU (Q4WHP3), STE20_ASPOR (Q2ULU3), STE20_CANAL (P0CY24), STE20_CANAW (C4YRB7), STE20_CANAX (P0CY23), STE20_CANGA (Q6FN53), STE20_DEBHA (Q6BNF3), STE20_EMENI (Q5BBL3), STE20_EREGS (Q75DK7), STE20_KLULA (Q6CVA2), STE20_NEUCR (Q7RZD3), STE20_PYRO7 (Q7Z8E9), STE20_SCHPO (P50527), STE20_TALMA (Q2VWQ3), STE20_USTMA (Q4P5N0), STE20_YARLI (Q6C3D7), STE20_YEAST (Q03497), WASL_BOVIN (Q95107), WASL_HUMAN (O00401), WASL_MOUSE (Q91YD9), WASL_RAT(O08816), WASP_HUMAN (P42768), WASP_MOUSE (P70315), YN03_CAEEL (Q03607)» more
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UniProtKB/Swiss-Prot False negative sequences |
4 sequences
ACK1_HUMAN (Q07912), ACK1_MOUSE (O54967), PAKF_DICDI (Q869T7), RGAP3_ARATH (Q8GYY5)» more |
PDB [Detailed view] |
11 PDB
1CEE; 1E0A; 1EES; 1F3M; 2ODB; 2OV2; 2QME; 4FIE; 5UPK; 5UPL; 6UHC |