Entry: PS50112

General information about the entry

Entry name [info] PAS
Accession [info] PS50112
Entry type [info] MATRIX
Date [info] DEC-2001 (CREATED); OCT-2013 (DATA UPDATE); JUN-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC50112
Associated ProRule [info] PRU00140

Name and characterization of the entry

Description [info] PAS repeat profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=72;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=67;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.1544000; R2=0.0321907; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=2250.2907715; R2=2.5326798; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=229; H_SCORE=2830; N_SCORE=8.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=167; H_SCORE=2673; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: D=-20; I=-20; B1=-40; E1=-40; MI=-105; MD=-105; IM=-105; DM=-105; MM=1; M0=-1;
...
                A   B   C   D   E   F   G   H   I   K   L   M   N   P   Q   R   S   T   V   W   Y   Z
/I:         B1=0; BI=-105; BD=-105;
/M: SY='S'; M= -2,  0,-20,  0,  0,-17,-13, -8,-14, -3,-15,-10,  2,-15,  0, -1,  6,  1, -9,-29,-13, -1;
/M: SY='E'; M= -7, -4,-25, -2, 13,-15,-17, -4,-17,  1,-12,-10, -6, -9,  4,  1, -4, -5,-16,-20, -4,  7;
/M: SY='E'; M=  2,  1,-22,  0,  8,-21,-14, -7,-19,  5,-17,-11,  1,-10,  4,  2,  2, -1,-15,-25,-13,  5;
/M: SY='R'; M= -7, -5,-24, -6,  1, -9,-19, -3,-15,  0, -8, -6, -4,-15, -1,  4, -6, -4,-13,-17, -4, -1;
/M: SY='L'; M=-12,-22,-24,-26,-20, 10,-24,-12, 11,-19, 15, 13,-19,-22,-16,-15,-19, -9,  4,-10,  8,-19;
/M: SY='R'; M= -3, -8,-22, -8,  0,-18,-18,-10,-12,  4,-14, -7, -6,-11, -1, 10, -3, -4, -5,-26,-13, -2;
/M: SY='Q'; M= -6, -5,-22, -5,  3,-17,-17,  1,-15,  0,-11, -5, -3,-14,  6,  5, -3, -4,-14,-23, -8,  3;
/M: SY='I'; M=  1,-18,-20,-23,-17, -4,-21,-19, 12,-19, 10,  6,-14,-18,-14,-16, -9, -2,  9,-23, -7,-17;
/M: SY='L'; M= -7,-25,-22,-28,-19,  5,-27,-19, 16,-22, 18, 12,-22,-16,-16,-19,-17, -8, 11,-20, -2,-19;
/M: SY='E'; M= -8, 14,-24, 17, 24,-28,-13,  2,-26,  4,-22,-17, 10,-10, 12,  1,  3, -6,-24,-31,-17, 18;
/I:         I=-7; MI=-8; MD=-21; IM=-8;
/M: SY='S'; M=  2,  0,-19, -4, -4,-19, -7, -7,-16, -7,-17,-12,  5, -5, -3, -8, 10, 10,-13,-29,-15, -4; D=-4;
/I:         DM=-21;
/M: SY='L'; M=  5,-15,-16,-20,-13, -6,-19,-17,  5,-16,  8,  3,-12,-17,-11,-16, -4,  2,  5,-23, -8,-12; D=-4;
/I:         DM=-21;
/M: SY='P'; M= -6, -1,-25, -1, -3,-19,-14, -8,-11, -7,-16,-10, -1,  3, -5, -9,  0,  0,-11,-28,-14, -6; D=-4;
/I:         DM=-21;
/M: SY='D'; M= -3,  4,-21,  8, -1,-23, -7,-13,-18, -8,-19,-15, -1, -1, -8,-13,  2, -2,-12,-31,-19, -5;
/M: SY='P'; M= -1,-14,-25,-16,-13, -5, -1,-18,-14,-16,-14,-10, -9,  8,-17,-18, -4, -6,-13,-20,-14,-16;
/M: SY='I'; M= -6,-24,-22,-30,-23,  4,-28,-21, 22,-21, 10, 12,-18,-21,-18,-20,-12, -4, 18,-15,  1,-22;
/M: SY='F'; M=-11,-27,-22,-33,-25, 31,-26,-19,  6,-24,  9,  4,-22,-27,-25,-19,-18, -9,  3, 10, 15,-23;
/M: SY='V'; M=  2,-17,-18,-20,-16, -8,-13,-19,  4,-13,  0,  2,-15,-21,-14,-11, -7, -6, 10,-23,-10,-16;
/M: SY='V'; M= -2,-20,-19,-23,-18, -3,-22,-15,  6,-16,  4,  2,-17,-22,-15,-14, -8, -1,  9,-10, -2,-17;
/M: SY='D'; M= -9, 31,-24, 39, 10,-31, -8, -2,-31, -1,-26,-23, 17,-12,  0, -5,  6, -2,-23,-36,-18,  5;
/M:         M=  0, -6,-20, -7,  0,-16,-16, -9, -8, -9, -7, -6, -6, -9, -4,-10, -1, -3, -7,-27,-13, -3;
/M: SY='B'; M= -7, 13,-24, 13,  6,-19,-13, -3,-21,  1,-19,-14, 10,-14,  2, -1,  2, -2,-18,-28,-11,  4;
/M: SY='G'; M=  1, -8,-25,-10,-13,-22, 34,-17,-28,-13,-21,-13, -2,-16,-13,-14,  1, -8,-20,-22,-22,-13;
/I:         I=-7; MI=-8; IM=-8; DM=-15; MD=-15;
/M: SY='R'; M= -9, -7,-21, -8, -4,-15,-17,-10,-13,  0,-13, -7, -5,-12, -4,  2, -9, -8,-12,-15, -8, -5;
/M: SY='I'; M= -8,-25, -9,-31,-24,  4,-30,-24, 20,-24, 10,  9,-20,-24,-20,-23,-15, -7, 17,-21, -3,-23;
/M: SY='I'; M= -4,-13,-16,-19,-14, -3,-22,-16,  7,-17,  5,  4, -9,-20,-12,-15, -4,  2,  7,-26, -7,-14;
/M: SY='Y'; M=-12,-11,-26,-11, -7, 10,-17,  3, -9,-11, -5, -4,-11,-22, -9,-11,-11, -8,-11, -1, 26,-10;
/M: SY='W'; M= -4,-27,-13,-31,-25,  2,-23,-26,  3,-21, -2, -3,-24,-26,-21,-20,-17,-10,  4, 22,  1,-22;
/M: SY='N'; M= -4, 26,-16, 17,  2,-22, -3,  1,-22, -4,-29,-20, 36,-16, -1, -5, 18,  6,-22,-39,-20,  1;
/M: SY='P'; M= -1,  2,-26,  6,  8,-26,-12, -7,-22, -1,-22,-16, -1,  9,  1, -5,  2, -2,-19,-28,-18,  3;
/M: SY='A'; M= 10, -1,-19, -6,  0,-21, -4,-11,-19,  1,-18,-12,  2,-12,  0, -2,  8,  2,-12,-25,-16,  0;
/M: SY='V'; M=  5,-20,-10,-27,-21,  4,-18,-19,  6,-19,  4,  6,-17,-21,-18,-19, -7, -3,  9,-17, -3,-19;
/M: SY='E'; M=  1, -6,-13, -7,  3,-15,-17,-10,-12, -5, -9, -8, -6,-15, -3, -5,  0,  0, -6,-26,-12,  0;
/M: SY='E'; M= -6,  2,-25,  4, 11,-24,-15, -6,-21,  9,-19,-12,  1, -8,  6,  8,  0, -4,-16,-27,-15,  7;
/M: SY='L'; M= -8,-24,-21,-27,-20,  7,-28,-12, 17,-22, 25, 17,-22,-25,-15,-18,-20, -7, 10,-17,  6,-19;
/M: SY='L'; M= -6,-18,-15,-23,-17, 12,-25,-18,  5,-21, 15,  5,-16,-22,-18,-16, -8,  9,  5,-18,  3,-17;
/M: SY='G'; M=  0, -6,-29, -6,-14,-30, 59,-17,-38,-16,-29,-20,  2,-18,-15,-17,  1,-18,-29,-21,-28,-15;
/M: SY='Y'; M=-14,-25,-25,-27,-20, 17,-28, -6,  3,-16,  9,  3,-23,-28,-15,-11,-22,-11, -3, 18, 31,-19;
/M: SY='S'; M= -1, -2,-20, -3,  2,-20,-12, -8,-17, -3,-16,-12,  1, -5,  0, -3,  9,  8,-13,-30,-15,  0;
/M: SY='P'; M= -7,-12,-28, -9,  1,-22,-17,-10,-16,  2,-17, -9, -9, 11,  2,  5, -6, -8,-15,-23,-15, -1;
/M: SY='E'; M= -5,  6,-25, 11, 19,-26,-12,  0,-23,  2,-20,-14,  1, -8,  9, -4,  1, -8,-20,-27,-15, 14;
/M: SY='E'; M=-10, 14,-28, 23, 38,-30,-16, -2,-27,  5,-20,-17,  3, -4, 14, -3,  0, -8,-25,-31,-18, 26;
/M: SY='V'; M= -1,-25,-16,-27,-22,  1,-25,-23, 16,-21, 16,  9,-24,-23,-20,-20,-16, -6, 18,-16, -4,-22;
/M: SY='I'; M= -7,-20,-21,-24,-18, -3,-28,-18, 19,-18, 13, 13,-17,-18,-14,-17,-14, -4, 14,-23, -4,-18;
/M: SY='G'; M= -3, -1,-27,  0, -7,-28, 34,-10,-31,-12,-25,-17,  4,-15, -9,-14,  1,-12,-25,-25,-23, -8;
/M: SY='R'; M=-10, -2,-26, -3,  3,-23,-15, -3,-22, 17,-19, -7,  2,-13,  8, 19, -4, -5,-17,-24,-10,  4;
/M: SY='S'; M= -3,  2,-21, -1, -2,-17,-10, -3,-15, -5,-17, -7,  6, -8,  0, -7,  7,  2,-14,-27,-11, -2;
/I:         MD=-15;
/M: SY='L'; M= -4, -7, -7, -8, -7, -2,-12, -8, -1,-10,  4,  0, -8,-12, -8, -8, -7, -3, -1,-11, -2, -8; D=-1;
/I:         I=-4; MI=-8; MD=-15; IM=-8; DM=-15;
/M: SY='I'; M= -4,-23,-14,-26,-21,  6,-25,-20, 14,-20, 13,  7,-20,-21,-19,-18,-14, -6, 14,-15, -1,-20; D=-1;
/I:         DM=-15;
/M: SY='Y'; M= -8,-16,-22,-18,-14,  1,-14, -9, -5,-11,  0,  0,-13,-23,-11, -8,-12, -8, -5, -9,  6,-14;
/M: SY='E'; M= -8,  9,-24, 14, 17,-21,-15, -3,-22, -1,-17,-14,  3, -9,  5, -5,  1, -5,-19,-29,-14, 11;
/M: SY='F'; M=-12,-21,-19,-25,-18, 13,-27,-10,  7,-17, 12,  7,-17,-25,-15,-10,-16, -6,  5,-14,  8,-17;
/M: SY='I'; M=-10,-24,-14,-28,-22,  9,-29,-16, 12,-20, 10,  7,-20,-24,-17,-16,-15, -5, 10,-13,  6,-20;
/M: SY='H'; M=-12, -2,-27, -1, -1,-17,-10, 31,-22, -7,-15, -5,  1,-13,  1, -4, -6,-12,-21,-25,  1, -2;
/M: SY='P'; M= -8, -9,-32, -4,  3,-26,-16,-11,-18, -5,-22,-15, -9, 38, -4,-11, -5, -6,-22,-29,-21, -4;
/M: SY='E'; M= -8, 12,-18, 18, 24,-28,-12, -3,-28,  3,-21,-18,  4,-10,  7, -3,  1, -7,-24,-31,-18, 15;
/M: SY='D'; M=-10, 17,-22, 24,  5,-23, -9, -6,-25, -6,-21,-19,  6, -9, -5,-10,  2, -3,-19,-30,-13, -1;
/M: SY='R'; M= -7, -9,-23, -9, -4,-14,-19,  1,-10,  0, -6, -2, -7,-19,  1,  7, -7, -6, -6,-23, -4, -3;
/M: SY='E'; M= -1,  2,-23,  4, 10,-22,-10, -8,-21, -1,-18,-14,  0, -4,  1, -4,  0, -6,-18,-27,-16,  5;
/M:         M= -5, -7,-19, -8,  0,-14,-15, -7,-14, -2,-11, -7, -6,-13, -4, -2, -3, -3, -9,-23, -9, -3;
/M: SY='V'; M= -7,-20,-18,-23,-17,  3,-23,-15, 11,-18, 11,  9,-18,-22,-16,-15,-13, -5, 12,-22, -3,-17;
/M: SY='R'; M= -7, -7,-24, -8,  2,-17,-19, -4,-13,  5, -9, -3, -5,-15,  5,  9, -5, -4,-10,-23, -8,  3;
/M: SY='E'; M= -3,  5,-23,  6, 14,-26,-11, -4,-25,  9,-22,-14,  4,-10,  8,  6,  2, -5,-20,-26,-14, 10;
/M:         M= -1,-11,-19,-14, -6,-11,-16,-12, -5, -6, -5, -1, -8,-16, -3, -5, -3, -1, -2,-23, -9, -5;
/I:         I=-5; MI=-8; IM=-8; DM=-15; MD=-15;
/M: SY='L'; M= -9,-20,-22,-23,-16,  4,-27,-12, 12,-20, 18,  9,-18,-23,-13,-15,-16, -6,  7,-18,  3,-16;
/M: SY='Q'; M=-10,  4,-25,  4, 10,-22,-14,  7,-23,  5,-20,-11,  6,-11, 12,  9, -1, -7,-22,-23, -8,  9;
/M: SY='R'; M= -9,  0,-24, -2,  2,-18,-15, -2,-17,  3,-13, -7,  2,-16,  5,  7, -4, -4,-16,-22, -8,  3;
/M: SY='A'; M= 11,-14,-13,-18,-14, -9,-14,-17,  1,-15, -1, -2,-13,-17,-14,-18,  0,  1,  6,-24,-10,-14;
/M: SY='L'; M= -4,-24,-19,-28,-19,  0,-26,-18, 18,-20, 21, 17,-21,-23,-14,-16,-17, -6, 14,-20, -4,-18;
/M: SY='E'; M= -5,  5,-25,  5, 13,-24,-15, -2,-21,  8,-19,-11,  6, -9,  9,  5,  1, -2,-19,-27,-13, 10;
/M: SY='N'; M= -6,  2,-25, -1, -1,-23,  4, -3,-23,  0,-20,-12,  7,-15, -1,  1, -1, -6,-20,-26,-15, -2;
/M: SY='G'; M= -6,  2,-26,  4,  5,-26,  7, -3,-27, -1,-22,-14,  3,-12,  3, -3,  0, -9,-23,-25,-16,  3;
/I:         E1=0; IE=-105; DE=-105;
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_08 which contains 551'987 sequence entries.


Total number of hits 474 in 336 different sequences
Number of true positive hits 474 in 336 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 88
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 84.34 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] K_Hofmann
Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 3
Feature key [info] DOMAIN
Feature description [info] PAS
Version [info] 4

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
336 sequences

ADO1_ARATH  (Q94BT6    ), ADO1_ORYSJ  (Q5Z8K3    ), ADO2_ARATH  (Q8W420    ), 
ADO2_ORYSJ  (Q67UX0    ), ADO3_ARATH  (Q9C9W9    ), ADO3_ORYSJ  (Q2R2W1    ), 
AHA1_CAEEL  (O02219    ), AHRR_HUMAN  (A9YTQ3    ), AHRR_MOUSE  (Q3U1U7    ), 
AHRR_RAT    (Q75NT5    ), AHR_CAEEL   (O44712    ), AHR_DELLE   (Q95LD9    ), 
AHR_HUMAN   (P35869    ), AHR_MOUSE   (P30561    ), AHR_MUSCR   (Q8R4S7    ), 
AHR_MUSMC   (Q8R4S6    ), AHR_MUSMM   (Q8R4S5    ), AHR_MUSSI   (Q8R4S4    ), 
AHR_MUSSP   (Q8R4S2    ), AHR_RABIT   (O02747    ), AHR_RAT     (P41738    ), 
ARCB_ECO57  (P58363    ), ARCB_ECOLI  (P0AEC3    ), ARCB_SHIFL  (P0AEC4    ), 
ARNT2_DANRE (Q9DG12    ), ARNT2_HUMAN (Q9HBZ2    ), ARNT2_MOUSE (Q61324    ), 
ARNT2_RAT   (Q78E60    ), ARNT_BOVIN  (Q9BE97    ), ARNT_DROME  (O15945    ), 
ARNT_HUMAN  (P27540    ), ARNT_MOUSE  (P53762    ), ARNT_ONCMY  (P79832    ), 
ARNT_RABIT  (O02748    ), ARNT_RAT    (P41739    ), ATOS_ECOLI  (Q06067    ), 
BAT_HALSA   (Q9HPU8    ), BDLA_PSEAE  (Q9I3S1    ), BMAL1_CHICK (Q9I8T7    ), 
BMAL1_HORSE (A0MLS5    ), BMAL1_HUMAN (O00327    ), BMAL1_MESAU (O88529    ), 
BMAL1_MOUSE (Q9WTL8    ), BMAL1_NANGA (Q91YA9    ), BMAL1_PONAB (Q5R4T2    ), 
BMAL1_RAT   (Q9EPW1    ), BMAL1_TYTAL (Q6YGZ5    ), BMAL2_CHICK (Q8QGQ7    ), 
BMAL2_HUMAN (Q8WYA1    ), BMAL2_MOUSE (Q2VPD4    ), BPHY_XANC8  (A0A0H2XCS3), 
BVGS_BORBR  (P26762    ), BVGS_BORPA  (P40330    ), BVGS_BORPE  (P16575    ), 
CCKA_BRUA2  (P0DOA0    ), CEK1_SCHPO  (P38938    ), CGPB_FUSSO  (Q00858    ), 
CLOCK_CHICK (Q8QGQ6    ), CLOCK_DROME (O61735    ), CLOCK_HUMAN (O15516    ), 
CLOCK_MOUSE (O08785    ), CLOCK_NANGA (Q91YB0    ), CLOCK_PONAB (Q5RAK8    ), 
CLOCK_RAT   (Q9WVS9    ), CLOCK_SPACA (Q91YB2    ), CLOCK_SPAJD (Q91YA8    ), 
CLOCK_TYTAL (Q6YGZ4    ), CRTJ_RHOCA  (P26167    ), CYCL_DROME  (O61734    ), 
DCTS_RHOCA  (P37739    ), DCUS_ECO57  (P0AEC9    ), DCUS_ECOL6  (P59340    ), 
DCUS_ECOLI  (P0AEC8    ), DCUS_SHIFL  (P59341    ), DHKH_DICDI  (Q54W36    ), 
DHKL_DICDI  (Q54RP6    ), DOSP_ECOLI  (P76129    ), DPO3E_RHOCB (O68045    ), 
DSPA_SYNY3  (P20169    ), EPAS1_HUMAN (Q99814    ), EPAS1_MOUSE (P97481    ), 
EPAS1_RAT   (Q9JHS1    ), ERT1_ASHGO  (Q754V2    ), ERT1_CANAW  (C4YLC3    ), 
ERT1_CANDC  (B9WLA7    ), ERT1_CANGA  (Q6FML7    ), ERT1_KLULA  (Q6CKI5    ), 
ERT1_LACTC  (C5E2K7    ), ERT1_PICST  (A3LQV7    ), ERT1_POSPM  (B8PBQ6    ), 
ERT1_YEAS1  (B3LMS3    ), ERT1_YEAS2  (C7GMR4    ), ERT1_YEAS7  (A6ZLH8    ), 
ERT1_YEAS8  (D3UEY7    ), ERT1_YEAST  (P38140    ), ERT1_ZYGRC  (C5E1J9    ), 
FILI_METH6  (E5KK10    ), FIXL_AZOC5  (P26489    ), FIXL_BRADU  (P23222    ), 
FIXL_RHIME  (P10955    ), GMR_ECOLI   (P77334    ), GSM1_ASHGO  (Q754J3    ), 
GSM1_CANGA  (Q6FLG1    ), GSM1_CANTT  (C5MCK5    ), GSM1_KLULA  (Q6CK33    ), 
GSM1_PICGU  (A5DRJ2    ), GSM1_PICPG  (C4QV17    ), GSM1_VANPO  (A7TQK0    ), 
HIF1A_BOSMU (Q0PGG7    ), HIF1A_BOVIN (Q9XTA5    ), HIF1A_CHICK (Q9YIB9    ), 
HIF1A_EOSBA (Q309Z6    ), HIF1A_HUMAN (Q16665    ), HIF1A_MOUSE (Q61221    ), 
HIF1A_ONCMY (Q98SW2    ), HIF1A_RAT   (O35800    ), HIF1A_XENLA (Q9I8A9    ), 
HIF1_CAEEL  (G5EGD2    ), HIF3A_HUMAN (Q9Y2N7    ), HIF3A_MOUSE (Q0VBL6    ), 
HIF3A_RAT   (Q9JHS2    ), HLH34_CAEEL (P90953    ), HTR9_HALSA  (Q9HQ00    ), 
KCNAE_DROME (Q02280    ), KCNH1_BOVIN (O18965    ), KCNH1_HUMAN (O95259    ), 
KCNH1_MOUSE (Q60603    ), KCNH1_RAT   (Q63472    ), KCNH2_CANLF (Q9TSZ3    ), 
KCNH2_HUMAN (Q12809    ), KCNH2_MOUSE (O35219    ), KCNH2_RABIT (Q8WNY2    ), 
KCNH2_RAT   (O08962    ), KCNH3_HUMAN (Q9ULD8    ), KCNH3_MOUSE (Q9WVJ0    ), 
KCNH3_RAT   (O89047    ), KCNH4_HUMAN (Q9UQ05    ), KCNH4_RAT   (Q9R1T9    ), 
KCNH6_CHICK (Q9PT84    ), KINA_BACSU  (P16497    ), KINC_BACSU  (P39764    ), 
KINE_BACSU  (O31661    ), LOVHK_BRUA1 (B2SB67    ), LOVHK_BRUA2 (Q2YKK7    ), 
LOVHK_BRUAB (Q577Y7    ), LOVHK_BRUC2 (A9MBM8    ), LOVHK_BRUME (Q8YC53    ), 
LOVHK_BRUO2 (A5VUS1    ), LOVHK_BRUSI (A9WYQ7    ), LOVHK_BRUSU (Q8FW73    ), 
LOVHK_OCHA4 (A6X554    ), LOVHK_PSE14 (Q48IV1    ), LOVHK_PSESM (Q881J7    ), 
LOVHK_PSEU2 (Q4ZSY3    ), LOVHK_RHIL3 (Q1M667    ), LVHK1_ERYLH (Q2NCA3    ), 
LVHK2_ERYLH (Q2NB77    ), LVHTH_ERYLH (Q2NB98    ), MAK1_SCHPO  (Q9P7Q7    ), 
MSMS_METAC  (Q8THF6    ), NCOA1_HUMAN (Q15788    ), NCOA1_MOUSE (P70365    ), 
NCOA1_PIG   (Q4PJW2    ), NCOA2_DANRE (Q98TW1    ), NCOA2_HUMAN (Q15596    ), 
NCOA2_MOUSE (Q61026    ), NCOA2_RAT   (Q9WUI9    ), NCOA2_XENLA (Q9W705    ), 
NCOA2_XENTR (B5DE09    ), NCOA3_HUMAN (Q9Y6Q9    ), NCOA3_MOUSE (O09000    ), 
NCOA3_XENLA (O57539    ), NIFL_AZOVI  (P30663    ), NIFL_KLEOX  (P56267    ), 
NIFL_KLEPN  (P06772    ), NODV_BRADU  (P15939    ), NPAS1_HUMAN (Q99742    ), 
NPAS1_MOUSE (P97459    ), NPAS2_CHICK (Q5ZQU2    ), NPAS2_HUMAN (Q99743    ), 
NPAS2_MOUSE (P97460    ), NPAS3_HUMAN (Q8IXF0    ), NPAS3_MOUSE (Q9QZQ0    ), 
NPAS4_DANRE (Q1ECW2    ), NPAS4_HUMAN (Q8IUM7    ), NPAS4_MOUSE (Q8BGD7    ), 
NPAS4_RAT   (Q8CJH6    ), NTRB_AZOBR  (P45670    ), NTRB_ECO57  (P0AFB6    ), 
NTRB_ECOLI  (P0AFB5    ), NTRB_SHIFL  (P0AFB7    ), NTRY_AZOC5  (Q04850    ), 
PASD1_HUMAN (Q8IV76    ), PASK_HUMAN  (Q96RG2    ), PASK_MOUSE  (Q8CEE6    ), 
PDE8A_HUMAN (O60658    ), PDE8A_MOUSE (O88502    ), PDE8B_HUMAN (O95263    ), 
PDE8B_MOUSE (E9Q4S1    ), PDEB_SHEON  (Q8EJM6    ), PDHS_BRUA1  (B2S758    ), 
PDHS_BRUA2  (Q2YRB4    ), PDHS_BRUAB  (Q57BR6    ), PDHS_BRUC2  (A9M715    ), 
PDHS_BRUME  (Q8YIM6    ), PDHS_BRUO2  (A5VRX4    ), PDHS_BRUSI  (B0CI82    ), 
PDHS_BRUSU  (Q8FZ86    ), PDHS_OCHA4  (A6X5X4    ), PER1_HUMAN  (O15534    ), 
PER1_MOUSE  (O35973    ), PER1_RAT    (Q8CHI5    ), PER1_SPAJD  (Q8K3T3    ), 
PER2_CHICK  (Q8QGQ8    ), PER2_HUMAN  (O15055    ), PER2_MOUSE  (O54943    ), 
PER2_RAT    (Q9Z301    ), PER2_SPAJD  (Q8K3T2    ), PER3_HUMAN  (P56645    ), 
PER3_MOUSE  (O70361    ), PER3_RAT    (Q8CJE2    ), PER_ANTPE   (Q17062    ), 
PER_DROMA   (Q03353    ), PER_DROME   (P07663    ), PER_DROPS   (P12348    ), 
PER_DROSE   (Q03354    ), PER_DROSI   (Q03355    ), PER_DROVI   (P12349    ), 
PER_DROWI   (Q03297    ), PER_DROYA   (Q24767    ), PER_HYACE   (Q25020    ), 
PER_MANSE   (Q25478    ), PER_PERAM   (Q25637    ), PHOR_ECOLI  (P08400    ), 
PHOR_PSEAE  (P23621    ), PHOR_SHIDY  (P45609    ), PHOT1_ARATH (O48963    ), 
PHOT2_ARATH (P93025    ), PHOT2_ORYSJ (Q9ST27    ), PHOT_BACSU  (O34627    ), 
PHOT_LISIN  (Q92DM1    ), PHOT_LISMO  (P58724    ), PHT1A_ORYSJ (Q2QYY8    ), 
PHT1B_ORYSJ (Q2RBR1    ), PHY1_CERPU  (P25848    ), PHY1_PHYPA  (P36505    ), 
PHY1_SELMA  (Q01549    ), PHY2_CERPU  (Q39557    ), PHYA1_MAIZE (P19862    ), 
PHYA1_TOBAC (P33530    ), PHYA3_AVESA (P06593    ), PHYA4_AVESA (P06594    ), 
PHYA_ARATH  (P14712    ), PHYA_CUCPE  (P06592    ), PHYA_LATSA  (P93673    ), 
PHYA_ORYSI  (A2XLG5    ), PHYA_ORYSJ  (Q10DU0    ), PHYA_PEA    (P15001    ), 
PHYA_PETCR  (P55141    ), PHYA_POPTM  (O49934    ), PHYA_SOLTU  (P30733    ), 
PHYA_SORBI  (P93526    ), PHYA_SOYBN  (P42500    ), PHYB1_SOLLC (Q9ZS62    ), 
PHYB_ARATH  (P14713    ), PHYB_ORYSI  (A2XFW2    ), PHYB_ORYSJ  (Q10MG9    ), 
PHYB_SOLTU  (P34094    ), PHYB_SORBI  (P93527    ), PHYB_SOYBN  (P42499    ), 
PHYB_TOBAC  (P29130    ), PHYC_ARATH  (P14714    ), PHYC_ORYSI  (A2XM23    ), 
PHYC_ORYSJ  (Q10CQ8    ), PHYC_SORBI  (P93528    ), PHYD_ARATH  (P42497    ), 
PHYE_ARATH  (P42498    ), PHYE_IPONI  (P55004    ), PHY_ADICA   (P42496    ), 
PHY_MOUSC   (P33529    ), PHY_PICAB   (Q40762    ), PHY_PINSY   (Q41046    ), 
PLEC_CAUCR  (P37894    ), PYP_HALHA   (P16113    ), PYP_HALSE   (P81046    ), 
PYP_RHOSA   (Q53120    ), RCOM1_BURXL (Q13YL3    ), RSBP_BACSU  (O07014    ), 
SIM1A_DANRE (Q98SJ5    ), SIM1_HUMAN  (P81133    ), SIM1_MOUSE  (Q61045    ), 
SIM1_PANPA  (A1YFY6    ), SIM1_PANTR  (A2T6X9    ), SIM2_HUMAN  (Q14190    ), 
SIM2_MOUSE  (Q61079    ), SIMA_DROME  (Q24167    ), SIM_DROME   (P05709    ), 
STC_CLOBE   (P26047    ), TCSA_EMENI  (Q9P896    ), TDIS_THAAR  (O87939    ), 
TLOV1_ARATH (O64511    ), TMOS_PSEME  (Q8KIY1    ), TODS_PSEP1  (A5W4E3    ), 
TODS_PSEPT  (E0X9C7    ), TRH_DROME   (Q24119    ), TYRR_ECOLI  (P07604    ), 
WALK_STAA1  (A7WWQ7    ), WALK_STAA2  (A6TXG9    ), WALK_STAA3  (Q2FKN7    ), 
WALK_STAA8  (Q2G2U4    ), WALK_STAA9  (A5INR0    ), WALK_STAAB  (Q2YUQ2    ), 
WALK_STAAC  (Q5HJX6    ), WALK_STAAE  (A6QD58    ), WALK_STAAM  (Q7A305    ), 
WALK_STAAN  (Q7A8E0    ), WALK_STAAR  (Q6GKS6    ), WALK_STAAS  (Q6GD71    ), 
WALK_STAAT  (A8YYU2    ), WALK_STAAU  (Q9RDT3    ), WALK_STAAW  (Q7A215    ), 
WALK_STAEQ  (Q5HK19    ), WALK_STAES  (Q8CU87    ), WALK_STAHJ  (Q4LAJ8    ), 
WALK_STAS1  (Q4A159    ), WALK_STASR  (A5A2P0    ), WC1_NEUCR   (Q01371    ), 
WC2_NEUCR   (P78714    ), Y3085_AZOC5 (Q04855    ), Y4LL_SINFN  (P55552    ), 
Y8013_DICDI (Q54VU4    ), YCF26_PORPU (P51392    ), YCF26_PYRYE (Q1XD95    ), 
YEGE_ECOLI  (P38097    ), YGEV_ECOLI  (Q46802    ), YQIR_BACSU  (P54529    )
» more

UniProtKB/Swiss-Prot
False negative sequences
88 sequences

ACUK_CHAGB  (Q2GSA4    ), ACUK_NECH7  (C7YM38    ), ACUK_NEUCR  (Q7RUA4    ), 
ACUK_PHANO  (Q0U7C8    ), ACUK_PYRTR  (B2W978    ), ACUK_SCLS1  (A7EAG1    ), 
ACUK_SORMK  (D1ZRZ5    ), BPHY_DEIRA  (Q9RZA4    ), CAR_HALS3   (B0R9Z1    ), 
CITA_KLEPN  (P52687    ), CITS_BACHD  (Q9RC53    ), CITS_BACSU  (O34427    ), 
DCRA_DESVH  (P35841    ), DCTS_BACHD  (Q9K997    ), DCTS_BACSU  (P96601    ), 
DHAR_CITFR  (P45512    ), DHAR_ECOLI  (P76016    ), DHKA_DICDI  (Q54U87    ), 
DHKD_DICDI  (Q54SP4    ), DHKI_DICDI  (Q86AT9    ), DPIB_ECOLI  (P77510    ), 
ERT12_YARLI (Q6C764    ), ERT1_COPC7  (A8N767    ), ERT1_DEBHA  (Q6BY37    ), 
ERT1_PICGU  (A5DF43    ), ERT1_PICPG  (C4R1K8    ), ERT1_SCHCM  (D8Q8R5    ), 
ERT1_USTMA  (Q4PD88    ), GSM1_CLAL4  (C4Y4V1    ), GSM1_DEBHA  (Q6BJW8    ), 
GSM1_LODEL  (A5DU46    ), GSM1_PICST  (A3LWY2    ), GSM1_YEAS1  (B3LQ10    ), 
GSM1_YEAS2  (C7GR11    ), GSM1_YEAS7  (A6ZQM3    ), GSM1_YEAS8  (C8ZBB1    ), 
GSM1_YEAST  (P42950    ), GSM1_ZYGRC  (C5DX31    ), KCNH5_HUMAN (Q8NCM2    ), 
KCNH5_MOUSE (Q920E3    ), KCNH5_RAT   (Q9EPI9    ), KCNH6_HUMAN (Q9H252    ), 
KCNH6_RAT   (O54853    ), KCNH7_HUMAN (Q9NS40    ), KCNH7_MOUSE (Q9ER47    ), 
KCNH7_RAT   (O54852    ), KCNH8_HUMAN (Q96L42    ), KCNH8_MOUSE (P59111    ), 
KCNH8_RAT   (Q9QWS8    ), KINB_PSEAI  (O34206    ), MALK_BACSU  (O05250    ), 
NTRB_BRASR  (P10578    ), NTRB_KLEOX  (P06218    ), NTRB_PROHU  (P28788    ), 
NTRB_RHIME  (Q52977    ), NTRB_RHOCB  (P09431    ), NTRB_SALTI  (P0A2E0    ), 
NTRB_SALTY  (P0A2D9    ), NTRB_VIBAL  (P19906    ), NTRY_AZOBR  (P45675    ), 
PER_CAEEL   (Q65ZG8    ), PHOR_BACSU  (P23545    ), PHOR_HAEIN  (P71380    ), 
PHOR_KLEPN  (P45608    ), PHY1_SYNY3  (Q55168    ), PILS_PSEAE  (P33639    ), 
PPK31_SCHPO (O94324    ), PSK1_YEAST  (P31374    ), PYP_RHOCB   (O69138    ), 
PYP_RHOS4   (Q53226    ), RCOM2_BURXL (Q13IY4    ), RCOM_RHORT  (Q2RNI6    ), 
RCSC_ECOLI  (P0DMC5    ), RCSC_ECOLX  (P0DMC6    ), RCSC_SALTI  (Q56128    ), 
RCSC_SALTY  (P58662    ), RESE_BACSU  (P35164    ), ROCR_BACSU  (P38022    ), 
SPHS_SYNE7  (P39664    ), TYRR_CITBR  (O54426    ), TYRR_ENTAG  (Q9ZIB7    ), 
TYRR_SALTI  (P0A2D8    ), TYRR_SALTY  (P0A2D7    ), WALK_BACSU  (Q45614    ), 
Y091_CAUCR  (Q9ABX9    ), YDAM_ECO57  (Q8X8Q3    ), YDAM_ECOLI  (P77302    ), 
YKOW_BACSU  (O34311    )
» more

PDB
[Detailed view]
163 PDB

1BYW; 1D06; 1D7E; 1DP6; 1DP8; 1DP9; 1DRM; 1EW0; 1F98; 1F9I; 1GSV; 1KOU; 1LL8; 1LSV; 1LSW; 1LSX; 1LT0; 1NWZ; 1ODV; 1OT6; 1OT9; 1OTA; 1OTB; 1OTD; 1OTE; 1OTI; 1P97; 1S1Y; 1S1Z; 1S4R; 1S4S; 1S66; 1S67; 1T18; 1T19; 1T1A; 1T1B; 1T1C; 1TS0; 1TS6; 1TS7; 1TS8; 1UGU; 1UWN; 1UWP; 1V9Y; 1V9Z; 1VB6; 1WA9; 1X0O; 1XFN; 1XFQ; 1XJ2; 1XJ3; 1XJ4; 1XJ6; 1Y28; 2A24; 2B02; 2CMN; 2D01; 2D02; 2GJ3; 2HV1; 2I9V; 2JHE; 2K7S; 2KDK; 2KX6; 2L0W; 2L1M; 2L4R; 2MWG; 2OWH; 2OWJ; 2PHY; 2PR5; 2PR6; 2PYP; 2PYR; 2QJ5; 2QJ7; 2QWS; 2VLG; 2VV6; 2VV7; 2VV8; 2W0N; 2Z6C; 2Z6D; 2ZOH; 2ZOI; 3F1N; 3F1O; 3F1P; 3GDI; 3GEC; 3H7W; 3H82; 3P7N; 3PHY; 3PYP; 3RTY; 3T50; 3UMD; 3UME; 3VE3; 3VE4; 4B9O; 4BBT; 4BBU; 4BBV; 4DJ2; 4DJ3; 4EEP; 4EER; 4EES; 4EET; 4EEU; 4EQ1; 4F3L; 4GCZ; 4GHI; 4GS9; 4H6J; 4HHD; 4HOI; 4HP9; 4HQA; 4HY8; 4I38; 4I39; 4I3A; 4I3I; 4I3J; 4LLO; 4LPZ; 4M4X; 4MN5; 4MN6; 4NXB; 4NXE; 4NXF; 4NXG; 4PKY; 4R38; 4R3A; 4WL9; 4WLA; 4WN5; 4XT2; 4ZP4; 4ZPH; 4ZPK; 4ZPR; 4ZQD; 5AKP; 5HD3; 5HD5; 5HDC; 5HDD; 5HDS; 5J7E
» more

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