Entry: PS50118

General information about the entry

Entry name [info] HMG_BOX_2
Accession [info] PS50118
Entry type [info] MATRIX
Date [info] JAN-2003 (CREATED); OCT-2013 (DATA UPDATE); JUN-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00305
Associated ProRule [info] PRU00267

Name and characterization of the entry

Description [info] HMG boxes A and B DNA-binding domains profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=69;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=64;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.4607000; R2=0.0153885; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=4076.7500000; R2=4.7500000; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=458; H_SCORE=6252; N_SCORE=8.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=328; H_SCORE=5635; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: D=-20; I=-20; B1=-70; E1=-70; MI=-105; MD=-105; IM=-105; DM=-105;
...
                A   B   C   D   E   F   G   H   I   K   L   M   N   P   Q   R   S   T   V   W   Y   Z
/I:         B1=0; BI=-105; BD=-105;
/M: SY='P'; M= -5,-17,-29,-14, -6,-22,-20,-20, -8, -9,-18,-11,-14, 39,-11,-15, -6, -4,-12,-28,-21,-12;
/M: SY='K'; M=-10, -2,-31,  0, 12,-29,-20,-10,-29, 39,-29,-12, -2,  0,  9, 24, -8, -9,-22,-22,-13,  9;
/M: SY='R'; M=-14,-10,-28,-11, -1,-20,-20, -5,-22, 24,-18, -5, -3,-12,  6, 44, -9, -7,-15,-21,-11, -1;
/M: SY='P'; M= -2,-14,-33, -9, -1,-27,-15,-18,-19, -9,-27,-19,-13, 62, -8,-17, -2, -5,-24,-30,-27, -8;
/M: SY='M'; M= -5,-17,-24,-19,-10,-11,-21,-13,  0, -5,  1, 11,-15,  0, -6, -5,-10, -5, -2,-24,-10, -9;
/M: SY='N'; M= -1, 10,-16,  3, -4,-15, -2, -3,-18, -7,-25,-17, 21,-15, -3, -6, 20, 13,-16,-31,-10, -4;
/M: SY='A'; M= 30,-10,-14,-15, -9,-23,  5,-18,-16,-11,-17,-13, -8, -2, -8,-18,  9, -2, -8,-24,-22, -9;
/M: SY='F'; M=-19,-23,-25,-28,-21, 49,-29, -3, -2,-19,  3,  0,-19,-28,-22,-14,-18,-10, -6, 16, 45,-21;
/M: SY='F'; M=-12,-21,-22,-28,-18, 20,-26,-12, 12,-19, 12, 20,-16,-22,-13,-15,-16, -9,  5,-13,  6,-15;
/M: SY='I'; M= -8,-26,-20,-28,-21,  5,-29,-21, 18,-17, 18, 11,-23,-26,-18,-12,-18, -7, 18,-19, -2,-20;
/M: SY='W'; M=-19,-28,-31,-32,-24, 39,-26,-12, -7,-19, -3, -6,-24,-28,-21,-15,-24,-16,-13, 52, 37,-20;
/M: SY='S'; M=  2,-10,  0,-14,-10,-11,-15,-12,-12, -9,-11, -6, -6,-19, -7, -7,  7,  4, -5,-28,-10, -9;
/M: SY='Q'; M= -3,  0,-15, -3,  6,-26,-14, -4,-21,  8,-20, -9,  3,-14, 14,  8,  3, -3,-18,-27,-15,  9;
/M: SY='E'; M= -9, 10,-28, 16, 22,-25,-13,  2,-26,  2,-20,-15,  3, -9,  6, -1, -1, -8,-23,-24,-12, 13;
/M: SY='E'; M= -8, -4,-25, -4, 10,-14,-20,  3,-12,  0, -9, -3, -2,-15,  7, -1, -5, -7,-13,-23, -6,  8;
/M: SY='R'; M=-17,-10,-28,-11,  1,-14,-22,  2,-21, 16,-12, -5, -4,-19,  6, 41,-11,-10,-16,-20, -6,  0;
/M: SY='R'; M= -4, -3,-27, -2,  6,-25,-12,  2,-24,  8,-22,-12, -1, -1,  6, 11, -1, -7,-20,-26,-14,  4;
/M: SY='K'; M= -8,  3,-26,  2, 11,-26,-17, -5,-21, 19,-22,-10,  4,-12, 10, 12, -3, -5,-17,-25,-12, 10;
/I:         I=-5; MI=0; MD=-15; IM=0;
/M: SY='I'; M= -8,-21,-22,-25,-17,  5,-27,-14, 16,-13, 12, 11,-18,-21,-14,-12,-17, -8, 11,-13,  8,-17; D=-3;
/I:         DM=-15;
/M: SY='K'; M=  1, -9,-21,-12, -4,-14,-18,-10,-10,  9, -6,  0, -8,-15, -2,  4, -9, -7, -6,-20, -8, -3; D=-3;
/I:         DM=-15;
/M: SY='E'; M=  1,  0,-23, -1,  6,-22,-11, -1,-18,  5,-15, -8,  0,-12,  6,  1, -1, -6,-15,-24,-11,  5; D=-3;
/I:         MD=-15;
/M: SY='E'; M= -9,  3,-28,  8, 22,-27,-17, -1,-22,  5,-18,-12, -2,  0, 14,  1, -3, -8,-22,-25,-14, 17; D=-3;
/I:         MD=-15;
/M: SY='N'; M=-12, 10,-18,  2, -5, -8,-13, 14,-16, -8,-16,-10, 19,-20, -4, -5, -1, -4,-18,-24, -2, -5; D=-3;
/I:         MD=-15;
/M: SY='P'; M= -6,-16,-34, -9,  1,-28,-18,-18,-19, -6,-27,-18,-15, 66, -8,-15, -5, -6,-25,-29,-26, -7; D=-3;
/I:         I=-5; MI=0; MD=-15; IM=0; DM=-15;
/M: SY='D'; M= -8, 13,-25, 16,  6,-27,  1, -4,-27, -1,-23,-17,  9,-10,  1, -6,  3, -5,-23,-30,-18,  3; D=-3;
/I:         DM=-15;
/M: SY='M'; M= -4,-16,-21,-20,-14, -5,-21,-14,  8, -9, 10, 15,-16,-19,-10,-11,-13, -5,  6,-19, -4,-12; D=-3;
/I:         DM=-15;
/M: SY='H'; M= -5,  3,-23,  1,  5,-23, -9, 13,-24,  4,-24,-12,  8,-12,  6,  4,  7,  0,-20,-30,-10,  4;
/M: SY='N'; M= -7, -1,-19,-11,-12,  0,-17, -9, -1,-11, -7, -4,  8,-20,-12, -8, -2, -1, -2,-25, -7,-12;
/M: SY='A'; M=  9, -6,-18,-10, -6,-19, -1,-13,-14, -4,-15, -7, -1,-12, -5, -7,  9,  5, -9,-26,-16, -6;
/I:         I=-6; MI=-32; MD=-32; IM=-32;
/M: SY='E'; M= -4, 14,-25, 21, 28,-28,-14, -4,-24,  2,-19,-18,  4, -7,  8, -6,  2, -6,-20,-31,-18, 18; D=-6;
/I:         I=-6; MI=-32; IM=-32; DM=-32;
/M: SY='I'; M= -8,-27,-22,-32,-22,  6,-33,-25, 29,-25, 20, 14,-22,-23,-21,-23,-17, -6, 23,-21, -1,-23;
/M: SY='S'; M=  8, -5,-12, -8, -7,-18, -3,-14,-14, -8,-19,-11,  2,-13, -5,-10, 19, 11, -6,-32,-17, -6;
/I:         MD=-25;
/M: SY='K'; M= -8, -2,-26, -1,  5,-25,-15, -9,-24, 30,-24, -9, -1,-12,  8, 21, -5, -7,-16,-21,-11,  6; D=-5;
/I:         I=-5; MI=-25; MD=-25; IM=-25; DM=-25;
/M: SY='R'; M= -5, -9,-23,-12, -4,-15,-20,-10, -3,  4, -6,  2, -6,-14,  1,  5, -7, -6, -3,-20, -8, -3; D=-5;
/I:         I=-5; MI=-25; MD=-25; IM=-25; DM=-25;
/M: SY='L'; M= -4,-24, -4,-27,-21,  0,-22,-21, 12,-24, 22, 10,-22,-25,-18,-20,-18, -8,  9,-20, -6,-20; D=-5;
/I:         I=-5; MI=-25; MD=-25; IM=-25; DM=-25;
/M: SY='G'; M=  7, -7,-22, -8,-11,-25, 42,-16,-30,-14,-25,-17,  0,-15,-13,-16,  7, -9,-21,-22,-24,-12; D=-5;
/I:         DM=-25;
/M: SY='E'; M= -2,  2,-23,  4, 15,-23,-12, -5,-23,  8,-19,-13, -1,-11,  6,  3,  0, -6,-17,-25,-12, 10;
/M: SY='R'; M= -9, -7,-26, -8,  4,-19,-19, -6,-15, 12,-10,  0, -5,-15,  7, 20, -8, -7,-12,-22,-10,  4;
/M: SY='W'; M=-19,-38,-45,-39,-29, 10,-19,-28,-20,-20,-19,-19,-38,-30,-20,-20,-38,-28,-28,137, 29,-20;
/M: SY='K'; M=-10,  2,-27,  0,  6,-26,-15, -1,-26, 29,-26,-10,  7,-14, 10, 25, -4, -7,-20,-24,-11,  7;
/M: SY='N'; M= -2,  3,-21,  1,  4,-19, -9, -7,-16, -2,-12, -9,  5,-14,  0, -2,  2,  0,-15,-28,-14,  2;
/M: SY='L'; M= -9,-24,-18,-26,-14,  3,-27,-14, 15,-21, 32, 22,-24,-25,-12,-16,-23, -9,  7,-21, -2,-13;
/M: SY='S'; M=  0,  1,-19,  0,  3,-22, -9, -8,-20, -3,-23,-15,  4, -2,  1, -6, 16, 11,-14,-32,-17,  1;
/I:         MD=-22;
/M: SY='E'; M= -4,  8,-27, 13, 17,-28,-14, -6,-23,  3,-20,-16,  1,  6,  6, -4, -1, -7,-22,-28,-18, 11; D=-4;
/I:         MD=-22;
/M: SY='E'; M=  2,  4,-22,  4, 12,-25,-11, -6,-23, 11,-21,-13,  3, -9,  7,  3,  5, -1,-17,-26,-15,  9; D=-4;
/I:         I=-6; MI=0; IM=0; DM=-22;
/M: SY='E'; M= -9,  8,-28, 15, 31,-28,-19, -5,-22,  8,-18,-14, -1, -7, 11, -1, -3, -9,-19,-29,-16, 21;
/M: SY='K'; M=-11, -1,-30, -2,  8,-28,-20, -9,-29, 45,-28,-10,  0,-11, 10, 33,-10, -9,-19,-20,-10,  9;
/M: SY='R'; M= -2, -5,-25, -5,  3,-21,-13, -7,-16,  6,-14, -6, -4,-14,  6,  7, -3, -7,-13,-21,-11,  3;
/M: SY='P'; M= -9,-11,-31, -8,  3,-23,-21, -7,-18,  9,-20, -8,-11, 24, -1,  1,-10, -9,-18,-24,-13, -2;
/M: SY='Y'; M=-20,-26,-29,-29,-24, 42,-28,  0, -2,-18,  1, -2,-23,-30,-21,-15,-23,-13, -9, 38, 54,-23;
/M: SY='E'; M=-11, -7,-27, -7,  5, -8,-24, -6, -4, -3, -7, -4, -7,-15, -2, -6, -8, -8, -6,-20, -1,  0;
/M: SY='E'; M= -7,  9,-27, 13, 19,-28,-16,  1,-25, 11,-21,-14,  3, -9, 13,  5, -1, -8,-22,-27,-13, 15;
/M: SY='E'; M= -6, -5,-25, -4, 12,-18,-19, -7,-14,  9, -5,  1, -8,-13,  4,  4,-10, -9,-12,-24,-11,  8;
/M: SY='A'; M= 31,-11,-11,-19,-10,-12, -7,-15, -9,-10, -9, -8,-10,-14, -8,-16,  5, -1, -3,-17, -8, -9;
/M: SY='E'; M= -1,  0,-24,  0, 15,-25,-16, -6,-19, 11,-17, -9, -1,-11, 13,  5,  0, -6,-16,-25,-14, 14;
/I:         I=-6; MI=-32; MD=-32; IM=-32;
/M: SY='R'; M= -5, -1,-26,  1, 13,-24,-15, -7,-24, 18,-19,-11, -1,-12,  7, 19, -3, -7,-17,-24,-14,  9; D=-6;
/I:         I=-6; MI=-32; IM=-32; DM=-32;
/M: SY='D'; M=-10,  6,-25, 12,  8,-19,-19, -7,-13, -7,  0, -6, -4,-16,  1, -7,-10, -9,-13,-27,-11,  4;
/M: SY='R'; M=-11, -6,-29, -6,  3,-22,-20, -5,-23, 27,-19, -7, -4,-15,  9, 28,-10,-10,-17,-15, -6,  5;
/M: SY='E'; M=  4, -6,-22, -7,  5,-20,-17, -9,-13,  5,-11, -6, -7,-13,  5,  1, -3, -4, -8,-23,-11,  5;
/M: SY='R'; M=-13, -3,-27, -2,  9,-23,-20, -4,-20, 16,-14, -6, -2,-15, 12, 25, -8, -9,-16,-23,-11,  9;
/M: SY='Y'; M=-19,-14,-29,-15,-14, 14,-26, 40, -9,-11, -5,  0,-11,-27, -4, -7,-16,-13,-16, 10, 55,-13;
/M: SY='E'; M=-11,  1,-27,  3, 18,-20,-20, -1,-16,  6, -9, -1, -2,-12, 10,  6, -8, -9,-17,-26,-11, 13;
/M: SY='R'; M= -5, -2,-24, -2,  5,-22,-16, -8,-20, 15,-17, -9, -1,-14,  4, 18, -3, -5,-13,-25,-13,  3;
/M: SY='E'; M= -5,  9,-25, 14, 27,-27,-16, -2,-23,  5,-18,-14,  3, -8, 10, -2, -1, -8,-21,-29,-16, 18;
/M: SY='M'; M=-12,-16,-24,-21,-15,  5,-24,  3,  7,-10,  7, 18,-13,-21, -8, -9,-16, -9,  1,-11, 15,-13;
/I:         I=-6; MI=-32; MD=-32; IM=-32;
/M: SY='P'; M= -2, -5,-28, -2,  4,-27,-14,-12,-21,  7,-23,-13, -5, 17,  2,  0, -1, -5,-20,-27,-19,  1; D=-6;
/I:         I=-6; MI=-32; IM=-32; DM=-32;
/M: SY='D'; M= -3, 12,-24, 13,  9,-25, -6, -3,-24,  1,-20,-16,  9,-12,  2, -2,  3, -3,-20,-30,-17,  5;
/M: SY='Y'; M=-18,-20,-29,-22,-18, 24,-27,  6, -4,-11, -2, -2,-19,-28,-12,-11,-21,-12,-12, 33, 54,-17;
/M: SY='K'; M=-10, -3,-27, -5,  4,-19,-18, -8,-16, 16,-16, -6,  0,-14,  2, 16, -8, -8,-12,-22,-10,  2;
/I:         E1=0; IE=-105; DE=-105;
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_08 which contains 551'987 sequence entries.


Total number of hits 508 in 432 different sequences
Number of true positive hits 507 in 431 different sequences
Number of 'unknown' hits 1
Number of false positive hits 0
Number of false negative sequences 27
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 94.94 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] K_Hofmann, N_Hulo
Taxonomic range [info] Eukaryotes, Eukaryotic viruses
Maximum number of repetitions [info] 6
Feature key [info] DNA_BIND
Feature description [info] HMG box
Version [info] 5

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
431 sequences

ABF2_YEAST  (Q02486    ), ADW2_ALLMI  (P40634    ), ADW4_ALLMI  (P40635    ), 
ADW5_ALLMI  (P40636    ), AES1_ALLMI  (P40637    ), AES2_ALLMI  (P40638    ), 
AES4_ALLMI  (P40639    ), AES6_ALLMI  (P40640    ), AMA1_ALLMI  (P40641    ), 
AMA2_ALLMI  (P40642    ), AMA3_ALLMI  (P40643    ), BBX_HUMAN   (Q8WY36    ), 
BBX_MOUSE   (Q8VBW5    ), BHMG1_HUMAN (C9JSJ3    ), CH01_CHICK  (P40665    ), 
CH02_CHICK  (P40666    ), CH03_CHICK  (P40667    ), CH04_CHICK  (P40668    ), 
CH07_CHICK  (P40669    ), CH31_CHICK  (P40670    ), CH32_CHICK  (P40671    ), 
CIC_DROME   (Q9U1H0    ), CIC_HUMAN   (Q96RK0    ), CIC_MOUSE   (Q924A2    ), 
CMB1_SCHPO  (Q10241    ), DICH_DROME  (Q24533    ), EGL13_CAEEL (Q23045    ), 
FPR1_PODAS  (P35693    ), HBP1_BOVIN  (Q2KJ34    ), HBP1_HUMAN  (O60381    ), 
HBP1_MOUSE  (Q8R316    ), HBP1_PONAB  (Q5R7I3    ), HBP1_RAT    (Q62661    ), 
HGB1A_HUMAN (B2RPK0    ), HM20A_CHICK (Q5ZKF4    ), HM20A_HUMAN (Q9NP66    ), 
HM20A_MOUSE (Q9DC33    ), HM20A_XENLA (Q6AZF8    ), HM20A_XENTR (Q6DIJ5    ), 
HM20B_BOVIN (Q32L68    ), HM20B_HUMAN (Q9P0W2    ), HM20B_MOUSE (Q9Z104    ), 
HMG10_ARATH (Q9LTT3    ), HMG11_ARATH (Q9LG02    ), HMG12_ARATH (Q941D1    ), 
HMG12_CAEEL (Q09390    ), HMG13_ARATH (Q9T012    ), HMG14_ARATH (O64702    ), 
HMG15_ARATH (Q9MAT6    ), HMG1A_CHITE (P40622    ), HMG1B_CHITE (P40623    ), 
HMG2_DROME  (Q24537    ), HMGB1_ARATH (O49595    ), HMGB1_BOVIN (P10103    ), 
HMGB1_CALJA (B0CM99    ), HMGB1_CANLF (Q6YKA4    ), HMGB1_CHICK (Q9YH06    ), 
HMGB1_CRIGR (P07156    ), HMGB1_HORSE (Q08IE6    ), HMGB1_HUMAN (P09429    ), 
HMGB1_MACFA (Q4R844    ), HMGB1_MOUSE (P63158    ), HMGB1_PAPAN (A9RA84    ), 
HMGB1_PIG   (P12682    ), HMGB1_PLEMO (B1MTB0    ), HMGB1_RAT   (P63159    ), 
HMGB2_ARATH (O49596    ), HMGB2_BOVIN (P40673    ), HMGB2_CHICK (P26584    ), 
HMGB2_HUMAN (P26583    ), HMGB2_MOUSE (P30681    ), HMGB2_PIG   (P17741    ), 
HMGB2_RAT   (P52925    ), HMGB3_ARATH (P93047    ), HMGB3_BOVIN (Q32L31    ), 
HMGB3_CHICK (P40618    ), HMGB3_HUMAN (O15347    ), HMGB3_MOUSE (O54879    ), 
HMGB4_ARATH (Q42344    ), HMGB4_BOVIN (Q32L34    ), HMGB4_HUMAN (Q8WW32    ), 
HMGB4_MOUSE (Q6P8W9    ), HMGB5_ARATH (O49597    ), HMGB6_ARATH (Q9SUP7    ), 
HMGB7_ARATH (Q8LDF9    ), HMGB9_ARATH (Q9SGS2    ), HMGB_TETTH  (P40626    ), 
HMGC_TETTH  (P11873    ), HMGD_DROME  (Q05783    ), HMGH_IIV6   (P40628    ), 
HMGH_STRPU  (P40644    ), HMGL_IPONI  (P40619    ), HMGL_SOYBN  (P26585    ), 
HMGL_TRYBR  (P26586    ), HMGL_VICFA  (P40620    ), HMGL_WHEAT  (P40621    ), 
HMGT_ONCMY  (P07746    ), HMGX3_HUMAN (Q12766    ), HMGX4_HUMAN (Q9UGU5    ), 
HMGX4_XENLA (Q6WKW9    ), HMGX4_XENTR (Q5BL56    ), HMGZ_DROME  (Q06943    ), 
HMG_TETPY   (P40625    ), HMO1_CANAL  (Q59PR9    ), HMO1_YEAST  (Q03973    ), 
IXR1_YEAST  (P33417    ), LEF1_HUMAN  (Q9UJU2    ), LEF1_MOUSE  (P27782    ), 
LEF1_RAT    (Q9QXN1    ), LG27_EUBMA  (P40654    ), LG28_EUBMA  (P40655    ), 
LSD1_SCHPO  (Q9Y802    ), LSD2_SCHPO  (Q10135    ), MAEL_AEDAE  (Q16YA8    ), 
MAEL_CULQU  (B0W2W6    ), MAEL_DROMO  (B4KVI7    ), MAEL_DROVI  (B4LF72    ), 
MAEL_PIG    (A4UTQ0    ), MAT2_COCHE  (Q02991    ), MAT2_COCSA  (Q9P445    ), 
MATB_NEUCS  (P36981    ), MATD_NEUCR  (Q10116    ), MATMC_SCHKA (Q6WRX6    ), 
MATMC_SCHPM (C7U331    ), MATMC_SCHPO (P0CY17    ), MG42_TARMA  (P40651    ), 
MG43_TARMA  (P40652    ), MG44_TARMA  (P40653    ), MLH_TETTS   (P40631    ), 
MNB1B_MAIZE (P27347    ), MTMC3_SCHPO (P0CY16    ), NHP10_YEAST (Q03435    ), 
NHP1_BABBO  (P40632    ), NHP6A_YEAST (P11632    ), NHP6B_YEAST (P11633    ), 
NHP6_ASHGO  (Q75B82    ), NHP6_ASPFU  (Q4WY33    ), NHP6_CANAL  (Q9UVL1    ), 
NHP6_CRYNB  (P0CO25    ), NHP6_CRYNJ  (P0CO24    ), NHP6_DEBHA  (Q6BRB4    ), 
NHP6_DICDI  (Q55C24    ), NHP6_EMENI  (Q5B995    ), NHP6_GIBZE  (Q4IQX3    ), 
NHP6_KLULA  (Q6CVH3    ), NHP6_NEUCR  (Q7S045    ), NHP6_SCHPO  (P87057    ), 
NHP6_USTMA  (Q4PBZ9    ), NHP6_YARLI  (Q6CC79    ), NSD2_HUMAN  (O96028    ), 
NSD2_MOUSE  (Q8BVE8    ), PANG1_DROME (P91943    ), PANG2_DROME (Q8IMA8    ), 
PB1_CHICK   (Q90941    ), PB1_HUMAN   (Q86U86    ), PB1_MOUSE   (Q8BSQ9    ), 
PMS1_HUMAN  (P54277    ), POP1_CAEBR  (A8WWH5    ), POP1_CAEEL  (Q10666    ), 
RFG1_CANAL  (Q5A220    ), ROX1_YEAST  (P25042    ), S17AA_XENLA (Q3KQ35    ), 
S17AB_XENLA (Q90ZH9    ), S17B1_XENLA (O42601    ), S17B1_XENTR (Q8AWH2    ), 
S17B2_XENTR (Q6GLH8    ), S17B3_XENLA (A5D8R3    ), S17B3_XENTR (Q6F2F0    ), 
SMCE1_HUMAN (Q969G3    ), SMCE1_MOUSE (O54941    ), SMCE1_RAT   (Q56A18    ), 
SMR2_PODAS  (Q08143    ), SOX10_CHICK (Q9W757    ), SOX10_HUMAN (P56693    ), 
SOX10_MOUSE (Q04888    ), SOX10_PIG   (A5A763    ), SOX10_RAT   (O55170    ), 
SOX10_XENLA (Q8AXX8    ), SOX10_XENTR (A4IIJ8    ), SOX11_CHICK (P48435    ), 
SOX11_HUMAN (P35716    ), SOX11_MOUSE (Q7M6Y2    ), SOX11_RAT   (P0C1G9    ), 
SOX11_XENTR (Q66JF1    ), SOX12_HUMAN (O15370    ), SOX12_MOUSE (Q04890    ), 
SOX12_XENLA (Q8AXQ4    ), SOX13_HUMAN (Q9UN79    ), SOX13_MOUSE (Q04891    ), 
SOX13_XENLA (P40649    ), SOX13_XENTR (Q28EW4    ), SOX14_CHICK (Q9W7R6    ), 
SOX14_DANRE (Q32PP9    ), SOX14_DROME (P40656    ), SOX14_HUMAN (O95416    ), 
SOX14_MACFA (P61259    ), SOX14_MOUSE (Q04892    ), SOX14_XENLA (B0ZTE2    ), 
SOX14_XENTR (A4QNG3    ), SOX15_DROME (P40657    ), SOX15_HUMAN (O60248    ), 
SOX15_MOUSE (P43267    ), SOX16_MOUSE (Q62247    ), SOX17_HUMAN (Q9H6I2    ), 
SOX17_MOUSE (Q61473    ), SOX18_HUMAN (P35713    ), SOX18_MOUSE (P43680    ), 
SOX18_XENTR (B3DLD3    ), SOX19_MOUSE (Q62249    ), SOX1A_DANRE (Q6DGL6    ), 
SOX1B_DANRE (Q2Z1R2    ), SOX1_CHICK  (O57401    ), SOX1_HUMAN  (O00570    ), 
SOX1_MOUSE  (P53783    ), SOX1_PLEWA  (P37839    ), SOX1_XENLA  (Q2PG84    ), 
SOX1_XENTR  (A2TED3    ), SOX21_CHICK (Q9W7R5    ), SOX21_HUMAN (Q9Y651    ), 
SOX21_MOUSE (Q811W0    ), SOX21_XENLA (B0ZTE1    ), SOX2_CAEEL  (Q21305    ), 
SOX2_CHICK  (P48430    ), SOX2_DANRE  (Q6P0E1    ), SOX2_HUMAN  (P48431    ), 
SOX2_MOUSE  (P48432    ), SOX2_SHEEP  (P54231    ), SOX2_XENLA  (O42569    ), 
SOX2_XENTR  (Q6NVN0    ), SOX30_HUMAN (O94993    ), SOX30_MACFA (Q8WNV5    ), 
SOX30_MOUSE (Q8CGW4    ), SOX3A_XENLA (P55863    ), SOX3B_XENLA (Q5FWM3    ), 
SOX3_CHICK  (P48433    ), SOX3_DANRE  (Q6EJB7    ), SOX3_HUMAN  (P41225    ), 
SOX3_MOUSE  (P53784    ), SOX3_XENTR  (Q68FA4    ), SOX4_HUMAN  (Q06945    ), 
SOX4_MOUSE  (Q06831    ), SOX5_HUMAN  (P35711    ), SOX5_MOUSE  (P35710    ), 
SOX5_XENLA  (P40647    ), SOX5_XENTR  (B3DM43    ), SOX6_HUMAN  (P35712    ), 
SOX6_MOUSE  (P40645    ), SOX6_PONAB  (Q5RCU4    ), SOX6_XENTR  (B1H349    ), 
SOX7_HUMAN  (Q9BT81    ), SOX7_MOUSE  (P40646    ), SOX7_XENLA  (O42342    ), 
SOX7_XENTR  (Q28GD5    ), SOX8_CHICK  (P57074    ), SOX8_HUMAN  (P57073    ), 
SOX8_MOUSE  (Q04886    ), SOX8_TETNG  (Q6IZ48    ), SOX8_XENLA  (Q6VVD7    ), 
SOX9A_XENLA (B7ZR65    ), SOX9B_XENLA (Q6DFF5    ), SOX9_CALJA  (Q9BG91    ), 
SOX9_CANLF  (Q7YRJ7    ), SOX9_CHICK  (P48434    ), SOX9_HUMAN  (P48436    ), 
SOX9_MACMU  (P61753    ), SOX9_MOUSE  (Q04887    ), SOX9_PANTR  (Q9BG89    ), 
SOX9_PIG    (O18896    ), SOX9_PONPY  (P61754    ), SOX9_XENTR  (Q6F2E7    ), 
SP100_GORGO (Q9N1Q6    ), SP100_HUMAN (P23497    ), SP100_HYLLA (Q9N1Q5    ), 
SP100_PANTR (Q9N1Q7    ), SRY_AKOAZ   (P36388    ), SRY_ALCAC   (Q863D9    ), 
SRY_APOAG   (O55063    ), SRY_APOFL   (O55062    ), SRY_ARCAU   (Q6T723    ), 
SRY_ARCFO   (Q6T724    ), SRY_ARCGZ   (Q6TC44    ), SRY_AXIPR   (Q863C2    ), 
SRY_BALAC   (Q864R2    ), SRY_BALBN   (Q864R1    ), SRY_BALMU   (Q864R0    ), 
SRY_BALPH   (Q864Q9    ), SRY_BISBI   (Q8SPQ2    ), SRY_BISBO   (Q27949    ), 
SRY_BOSGF   (Q7JGF9    ), SRY_BOSIN   (Q7JGF7    ), SRY_BOSJA   (Q8SPQ1    ), 
SRY_BOSMU   (Q9XS37    ), SRY_BOVIN   (Q03255    ), SRY_BUBBU   (Q69FB1    ), 
SRY_CALJA   (P51501    ), SRY_CALUR   (Q6TC43    ), SRY_CANLF   (Q9XT60    ), 
SRY_CAPHI   (Q03256    ), SRY_CERNI   (Q9BH08    ), SRY_CROSU   (Q95175    ), 
SRY_CYSCR   (Q6TC37    ), SRY_DELDE   (Q864P9    ), SRY_DELLE   (Q864Q3    ), 
SRY_ELADA   (Q863B7    ), SRY_ENHLU   (Q6TC27    ), SRY_ERIBA   (Q6TC30    ), 
SRY_EUBAS   (Q864Q7    ), SRY_EUMJU   (Q6TC46    ), SRY_FELCA   (Q6TC50    ), 
SRY_GLOMA   (Q864P4    ), SRY_GORGO   (P48046    ), SRY_GRAGR   (Q864P7    ), 
SRY_HALGR   (P36390    ), SRY_HORSE   (P36389    ), SRY_HUMAN   (Q05066    ), 
SRY_HYDLE   (Q6TC40    ), SRY_HYLLA   (Q28447    ), SRY_KOGSI   (Q864Q5    ), 
SRY_LAGOL   (Q864P8    ), SRY_LUTLU   (Q6TC28    ), SRY_MACFA   (P36391    ), 
SRY_MACMU   (Q9BG90    ), SRY_MEGNO   (Q864Q8    ), SRY_MELME   (P36392    ), 
SRY_MESST   (Q864Q4    ), SRY_MIRAN   (Q6TC39    ), SRY_MIRLE   (Q6TC38    ), 
SRY_MONSC   (Q6TC41    ), SRY_MOSBE   (Q67EX7    ), SRY_MOSCH   (Q67EX6    ), 
SRY_MOUSE   (Q05738    ), SRY_MUSSI   (Q62565    ), SRY_MUSSP   (Q62563    ), 
SRY_NEOAN   (Q95202    ), SRY_NEOPH   (Q864Q1    ), SRY_ORCBR   (Q864P3    ), 
SRY_ORCOR   (Q864P5    ), SRY_PAGGO   (Q6TC36    ), SRY_PANPA   (Q28778    ), 
SRY_PANTR   (Q28798    ), SRY_PENEL   (Q864P6    ), SRY_PHOLR   (Q6TC31    ), 
SRY_PHOPH   (Q864Q2    ), SRY_PHOVI   (Q6TC33    ), SRY_PHYCD   (Q864Q6    ), 
SRY_PIG     (P36393    ), SRY_PONPY   (Q28783    ), SRY_PRZAL   (Q863C0    ), 
SRY_PUSCA   (Q6TC34    ), SRY_PUSHI   (Q6TC32    ), SRY_RAT     (P36394    ), 
SRY_SHEEP   (Q03257    ), SRY_SMIMA   (P36395    ), SRY_TURTR   (Q864Q0    ), 
SRY_URSAR   (P36396    ), SRY_ZALCA   (Q6TC45    ), SSP1A_CAEEL (P41848    ), 
SSP1A_ORYSJ (Q9LGR0    ), SSP1B_CAEEL (O01683    ), SSP1B_ORYSJ (Q65WY8    ), 
SSRP1_ARATH (Q05153    ), SSRP1_CATRO (Q39601    ), SSRP1_CHICK (Q04678    ), 
SSRP1_CIOIN (Q4H2R2    ), SSRP1_DROME (Q05344    ), SSRP1_DROPS (Q293F6    ), 
SSRP1_HUMAN (Q08945    ), SSRP1_MAIZE (Q9LEF5    ), SSRP1_MOUSE (Q08943    ), 
SSRP1_RAT   (Q04931    ), SSRP1_VICFA (O04235    ), SSRP1_XENLA (Q9W602    ), 
STE11_PNECA (Q870J1    ), STE11_SCHPO (P36631    ), SX11A_XENLA (Q91731    ), 
SX11B_XENLA (P40650    ), SX17A_XENTR (Q8AWH3    ), SX18A_XENLA (Q90ZH8    ), 
SX18B_XENLA (Q90ZH7    ), SX19A_DANRE (P47792    ), SX19B_DANRE (Q9DDD7    ), 
SX21A_DANRE (Q7SZS1    ), SX21B_DANRE (Q6RVD7    ), T7L1A_DANRE (Q9YHE8    ), 
T7L1A_XENLA (P70062    ), T7L1B_DANRE (Q800Q5    ), T7L1B_XENLA (Q90ZB6    ), 
T7L1C_XENLA (P70063    ), T7L1D_XENLA (P70064    ), TCF7_HUMAN  (P36402    ), 
TCF7_MOUSE  (Q00417    ), TF7L1_HUMAN (Q9HCS4    ), TF7L1_MOUSE (Q9Z1J1    ), 
TF7L1_XENTR (Q6GL68    ), TF7L2_HUMAN (Q9NQB0    ), TF7L2_MOUSE (Q924A0    ), 
TFAM_BOVIN  (Q0II87    ), TFAM_HUMAN  (Q00059    ), TFAM_MOUSE  (P40630    ), 
TFAM_PIG    (Q5D144    ), TFAM_RAT    (Q91ZW1    ), TFAM_TRACR  (Q4H0T5    ), 
TOX2_HUMAN  (Q96NM4    ), TOX2_RAT    (Q76IQ7    ), TOX3_HUMAN  (O15405    ), 
TOX3_MOUSE  (Q80W03    ), TOX3_RAT    (B7SBD2    ), TOX4A_XENLA (Q6DJL0    ), 
TOX4B_XENLA (Q6IRR0    ), TOX4_BOVIN  (Q0P5K4    ), TOX4_HUMAN  (O94842    ), 
TOX4_MOUSE  (Q8BU11    ), TOX4_PONAB  (Q5R6A9    ), TOX4_RAT    (Q99PM1    ), 
TOX4_XENTR  (A4QNP0    ), TOX_HUMAN   (O94900    ), TOX_MOUSE   (Q66JW3    ), 
UBF1A_XENLA (P25979    ), UBF1B_XENLA (P25980    ), UBF1_HUMAN  (P17480    ), 
UBF1_MOUSE  (P25976    ), UBF1_RAT    (P25977    ), UBFL1_HUMAN (P0CB47    ), 
UBFL1_MOUSE (Q3USZ2    ), UBFL6_HUMAN (P0CB48    ), VF401_IIV3  (Q196Z2    ), 
WDHD1_HUMAN (O75717    ), WDHD1_MOUSE (P59328    ), WDHD1_XENLA (O13046    ), 
YHHB_SCHPO  (Q9USU7    ), YR545_MIMIV (Q5UQA4    )
» more

UniProtKB/Swiss-Prot
False negative sequences
27 sequences

MAEL1_DROAN (B3MB79    ), MAEL1_DROPE (B4GN46    ), MAEL1_DROPS (B5DR03    ), 
MAEL2_DROAN (B3MZY6    ), MAEL2_DROPE (B4GN43    ), MAEL2_DROPS (B5DRY3    ), 
MAEL_BOVIN  (Q32KV2    ), MAEL_DROER  (B3NEF0    ), MAEL_DROGR  (B4J3A3    ), 
MAEL_DROME  (Q9VNS0    ), MAEL_DROSE  (B4IB36    ), MAEL_DROSI  (B4QL99    ), 
MAEL_DROYA  (B4PIP5    ), MAEL_HUMAN  (Q96JY0    ), MAEL_MACFA  (Q4R786    ), 
MAEL_MOUSE  (Q8BVN9    ), MAEL_XENTR  (Q08D62    ), MATA2_CANAL (Q71U11    ), 
MATA2_KLULA (Q9HG13    ), MATA2_YARLL (O93958    ), MATPC_SCHKA (Q6WRX9    ), 
MATPC_SCHPM (P10841    ), TAF1_HUMAN  (P21675    ), TAF1_MESAU  (Q60544    ), 
TAF1_MOUSE  (Q80UV9    ), YF98_SCHPO  (O42648    ), YGM4_SCHPO  (O42953    )
» more

UniProtKB/Swiss-Prot
'Unknown' sequences
1 sequence

SPP41_YEAST (P38904    )

		
PDB
[Detailed view]
61 PDB

1AAB; 1CG7; 1CKT; 1E7J; 1GT0; 1HMA; 1HME; 1HMF; 1HRY; 1HRZ; 1HSM; 1HSN; 1I11; 1J3C; 1J3D; 1J3X; 1J46; 1J47; 1J5N; 1K99; 1L8Y; 1L8Z; 1LWM; 1NHM; 1NHN; 1O4X; 1QRV; 1V63; 1V64; 1WGF; 1WXL; 1WZ6; 2CO9; 2CRJ; 2CS1; 2D7L; 2E6O; 2EQZ; 2GZK; 2HDZ; 2LE4; 2LEF; 2LHJ; 2LY4; 2RTU; 2YQI; 2YRQ; 2YUL; 3F27; 3FGH; 3NM9; 3TMM; 3TQ6; 3U2B; 4A3N; 4EUW; 4NNU; 4NOD; 4QR9; 4S2Q; 4Y60
» more

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission