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Entry: PS50128

General information about the entry

Entry name [info] SURP
Accession [info] PS50128
Entry type [info] MATRIX
Date [info] 01-JAN-2003 CREATED; 10-MAY-2017 DATA UPDATE; 22-NOV-2017 INFO UPDATE.
PROSITE Doc. [info] PDOC50128
Associated ProRule [info] PRU00263

Name and characterization of the entry

Description [info] SURP motif repeat profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=43;
/DISJOINT: DEFINITION=PROTECT; N1=5; N2=39;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.3965000; R2=0.0176753; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=2105.0000000; R2=1.0091954; PRIORITY=1; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=402; H_SCORE=2511; N_SCORE=8.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=289; H_SCORE=2397; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-8; D=-50; I=-50; B1=-1000; E1=-1000; MI=-105; MD=-105; IM=-105; DM=-105;
...
                A   B   C   D   E   F   G   H   I   K   L   M   N   P   Q   R   S   T   V   W   Y   Z
/I:         B1=0; BI=-105; BD=-105;
/M: SY='I'; M= -8,-24,-18,-29,-24, -3,-33,-25, 28,-22, 14, 11,-20,-23,-18,-20,-15, -4, 24,-25, -5,-23;
/M: SY='I'; M= -6,-29,-23,-36,-28,  3,-35,-28, 39,-27, 19, 16,-23,-24,-23,-26,-18, -7, 31,-21, -2,-28;
/M: SY='E'; M=-13, 14,-29, 19, 21,-30,-17,  0,-29, 19,-25,-16,  7,-10, 10, 12, -4, -9,-24,-28,-14, 15;
/M: SY='K'; M= -9, -9,-24,-11, -6,-11,-19,-11,-10,  8, -4, -2, -6,-18, -5,  7,-10, -3, -7,-21, -5, -6;
/M: SY='T'; M= -2,-10, -9,-18,-15, -2,-23,-19,  0,-15,  2, -1,-10,-17,-14,-14,  4, 26,  5,-25, -4,-15;
/M: SY='A'; M= 38,-13,-11,-21,-13,-16, -6,-21, -2,-12, -7, -6,-12,-14,-13,-20,  7,  1,  8,-23,-18,-13;
/M: SY='Q'; M= -9, -1,-21,  0, 11,-25,-15, -3,-22,  7,-17, -9,  1,-13, 17, 11,  1, -3,-20,-27,-14, 13;
/M: SY='F'; M=-18,-25,-20,-31,-25, 52,-29, -5,  0,-23,  6,  0,-18,-29,-27,-17,-17, -9, -3,  9, 38,-25;
/M: SY='V'; M=  0,-28,-14,-30,-28,  0,-29,-26, 28,-20,  9, 10,-26,-27,-25,-20,-10, -1, 39,-25, -5,-27;
/M: SY='A'; M= 28,-12,-10,-18,-11,-17, -8,-19, -5,-10,-10, -7, -9,-14, -9,-16, 10,  2,  4,-25,-17,-10;
/M: SY='R'; M= -7, -7,-27, -8,  4,-24,-19, -7,-22, 22,-20, -8, -4,-15, 12, 27, -7, -8,-15,-15,-10,  6;
/I:         I=-14; MI=0; MD=-29; IM=0; DM=-29;
/M: SY='N'; M=-13, 15,-22,  9,  0,-15,-10, 12,-22,  2,-23,-14, 23,-19,  2,  3, -2, -7,-25,-24, -2,  0;
/M: SY='G'; M=  0,-10,-30,-10,-19,-30, 66,-20,-40,-17,-30,-20,  0,-20,-19,-18,  0,-20,-30,-20,-29,-19;
/M: SY='P'; M= -3,-10,-24, -9, -3,-18,-16,-14,-12, -1, -9, -6, -9,  1, -3, -2, -3, -1,-10,-26,-14, -4;
/M: SY='E'; M= -6,  0,-26,  2, 18,-22,-18, -3,-16,  2,-14, -8, -2, -7, 13,  0,  0, -5,-18,-25,-11, 15;
/M: SY='F'; M=-13,-25,-20,-32,-23, 49,-27,-16,  3,-22,  9,  4,-19,-26,-28,-17,-17, -8,  2,  0, 20,-23;
/M: SY='E'; M= -8,  1,-28,  7, 36,-24,-19, -4,-20,  4,-11,-12, -5, -7, 13,  2, -4,-10,-21,-27,-16, 24;
/M: SY='A'; M=  1, -2,-23, -5,  1,-20,-13, -8,-12, -1,-13, -6, -1,-10,  1, -3,  0, -1,-10,-25,-13,  0;
/M: SY='M'; M= -4,-10,-22,-14, -5,-14,-16,-10, -6,  4, -6,  6, -8,-16,  0,  3, -5, -4, -3,-23, -9, -3;
/M: SY='L'; M= -6,-25,-21,-29,-20,  1,-29,-21, 23,-24, 26, 17,-22,-24,-15,-20,-18, -4, 16,-22, -3,-19;
/M: SY='R'; M= -8,-14,-23,-18, -9,-11,-20, -8, -4,  5,  0, 13,-10,-19, -1, 14,-10, -6, -2,-22, -7, -6;
/I:         I=-15; MD=-32;
/M: SY='E'; M=  0,  6,-21,  6, 13,-24,-14, -6,-18,  3,-15,-11,  2,-10,  9, -2,  3,  1,-15,-26,-14, 11; D=-15;
/I:         I=-15; MI=-32; IM=-32; DM=-32;
/M: SY='R'; M=-13,  2,-27,  2,  5,-24,-17, -1,-27, 25,-23,-11,  6,-15,  9, 33, -4, -7,-21,-25,-11,  5;
/I:         I=-10; MD=-21;
/M: SY='E'; M= -6,  3,-18,  3, 11,-16,-14, -1,-10,  1,-12, -7,  2,-10,  9, -2,  0, -3,-10,-19, -6, 10; D=-10;
/I:         I=-10; MI=0; MD=-21; IM=0; DM=-21;
/M:         M= -4,  0,-22, -2, -2,-16,-14, -9, -9, -3,-12, -4,  0, -8,  0, -7, -3, -4, -8,-21,-12, -1; D=-10;
/I:         I=-10; DM=-21;
/M: SY='N'; M= -9, 16,-24, 12,  1,-23, -1,  0,-23,  2,-24,-15, 21,-12, -2,  1,  3, -2,-22,-31,-17, -1; D=-10;
/I:         I=-10; DM=-21;
/M: SY='N'; M=-10, 26,-23, 23,  7,-22, -8,  2,-22, -2,-23,-18, 28,-12, -1, -4,  4, -3,-23,-34,-16,  2; D=-10;
/I:         I=-10; DM=-21;
/M: SY='P'; M=  2, -5,-26, -3,  2,-21,-13,-10,-18, -6,-19,-14, -7, 18, -1,-13,  0, -1,-18,-23,-13, -1;
/I:         I=-15; MD=-32;
/M: SY='Q'; M= -8, -6,-25, -8,  4,-21,-18, -2,-16, 13,-12,  1, -4,-11, 17, 17, -7, -7,-16,-19, -7,  9; D=-15;
/I:         I=-15; MI=-32; IM=-32; DM=-32;
/M: SY='F'; M=-19,-29,-21,-38,-28, 68,-30,-16,  2,-29, 13,  2,-20,-29,-36,-20,-21,-10,  1,  5, 26,-28;
/M: SY='D'; M= -8, 15,-25, 16,  9,-26, -5,  1,-27,  2,-23,-17, 14,-10,  2,  0,  3, -4,-23,-32,-16,  4;
/M: SY='F'; M=-20,-30,-20,-40,-30, 80,-30,-20,  0,-30, 10,  0,-20,-30,-40,-20,-20,-10,  0, 10, 30,-30;
/M: SY='L'; M=-10,-28,-21,-30,-21,  8,-26,-18, 20,-26, 39, 24,-27,-28,-18,-19,-26,-10, 11,-20, -1,-20;
/M: SY='R'; M=-13,  1,-27, -2,  3,-14,-14,  0,-23, 14,-20,-10,  6,-16,  2, 15, -6, -8,-20,-17, -6,  2;
/I:         I=-15; MI=0; MD=-32; IM=0; DM=-32;
/M: SY='P'; M= -3, -5,-27, -1,  7,-23,-11,-12,-21, -4,-25,-17, -5, 23, -1,-11,  5, -2,-21,-29,-20,  1;
/M: SY='S'; M= -3,  9,-22,  8,  4,-24,  0,-10,-25, -1,-24,-17,  8,-12, -1, -6, 10,  6,-19,-28,-17,  2;
/M: SY='H'; M=-13, 22,-26, 24,  9,-27, -9, 29,-29, -3,-25,-16, 21,-15,  5, -4,  2, -9,-28,-34, -7,  6;
/M: SY='P'; M= -6, -5,-21, -3,  1,-18,-11, -6,-21, -9,-21,-16, -4, 14, -5,-11,  1, -3,-20,-27,-14, -4;
/M: SY='Y'; M=-12,-19,-26,-20,-15, 10,-25,  0, -1,-11,  7,  4,-17,-15,-10, -6,-17, -9, -7, -4, 23,-15;
/M: SY='H'; M=-14, -2,-19, -5, -6,  0,-20, 34,-19,-10,-14, -6,  3,-22, -3, -6, -8,-12,-19,-17, 17, -6;
/M:         M= -1, -7,-25, -8, -2,-13, -8, -1,-18, -6,-18,-11, -4,  0, -3, -7,  0, -4,-17,-20, -5, -4;
/M: SY='Y'; M=-16,-21,-24,-24,-21, 32,-28,  1,  1,-14,  4,  0,-19,-27,-18,-12,-15, -4, -2, 11, 47,-21;
/M: SY='Y'; M=-17,-21,-26,-24,-20, 37,-28,  5, -2,-13,  2,  0,-19,-28,-16,-11,-19,-10, -7, 18, 55,-20;
/I:         E1=0; IE=-105; DE=-105;
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2017_11 which contains 556'196 sequence entries.


Total number of hits 43 in 28 different sequences
Number of true positive hits 43 in 28 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 2
Feature key [info] REPEAT
Feature description [info] SURP motif
Version [info] 5

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
28 sequences

CHERP_HUMAN (Q8IWX8    ), CHERP_MOUSE (Q8CGZ0    ), PRP21_YEAST (P32524    ), 
RRC1L_ARATH (F4KIA8    ), RRC1_ARATH  (Q9C5J3    ), SA114_SCHPO (O13900    ), 
SF3A1_ARATH (Q8RXF1    ), SF3A1_BOVIN (A2VDN6    ), SF3A1_DICDI (Q86A14    ), 
SF3A1_HUMAN (Q15459    ), SF3A1_MOUSE (Q8K4Z5    ), SFSWA_HUMAN (Q12872    ), 
SFSWA_MOUSE (Q3USH5    ), SFSWA_RAT   (D3ZTQ1    ), SR140_HUMAN (O15042    ), 
SR140_MOUSE (Q6NV83    ), SR140_PONAB (Q5R7X2    ), SUGP1_ARATH (Q94C11    ), 
SUGP1_HUMAN (Q8IWZ8    ), SUGP1_MOUSE (Q8CH02    ), SUGP1_RAT   (Q68FU8    ), 
SUGP2_HUMAN (Q8IX01    ), SUGP2_MOUSE (Q8CH09    ), SUWA_DROME  (P12297    ), 
SWAP_CAEEL  (Q10580    ), TGHH_ORYSI  (B8B2G4    ), TGHH_ORYSJ  (Q67VW6    ), 
TGH_ARATH   (Q8GXN9    )
» more

PDB
[Detailed view]
7 PDB

1UG0; 1X4O; 2DT6; 2DT7; 2E5Z; 2E60; 4DGW

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