PROSITE

Home | Contact

Home

ScanProsite

Entry: PS50176

General information about the entry
Entry name	ARM_REPEAT
Accession number	PS50176
Entry type	MATRIX
Date	DEC-2001 (CREATED); DEC-2001 (DATA UPDATE); DEC-2011 (INFO UPDATE).
PROSITE Documentation	PDOC50176
Associated ProRule	PRU00259
Name and characterization of the entry
Description	Armadillo/plakoglobin ARM repeat profile.
Matrix / Profile	/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=45; /DISJOINT: DEFINITION=PROTECT; N1=5; N2=41; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=0.4374; R2=0.0350; TEXT='-LogE'; /CUT_OFF: LEVEL=0; SCORE=230; N_SCORE=8.5; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=173; N_SCORE=6.5; MODE=1; TEXT='?'; /DEFAULT: D=-20; I=-20; B1=*; E1=-30; MI=-105; MD=-105; IM=-105; DM=-105; A B C D E F G H I K L M N P Q R S T V W Y Z /I: B1=0; BI=-105; BD=-105; /M: SY='G'; M= -5, 1,-28, 1, -6,-26, 27, -8,-31, -5,-26,-17, 7,-16, -3, -5, 0,-13,-27,-22,-18, -5; /M: SY='G'; M= 8,-15,-16,-19,-19,-16, 15,-20,-11,-18, -7, -5,-10,-19,-17,-19, -4, -9, -5,-23,-19,-18; /M: SY='I'; M= -6,-26,-20,-29,-23, 0,-30,-23, 25,-24, 21, 15,-23,-20,-20,-21,-17, -4, 21,-24, -5,-23; /M: SY='P'; M= -2, -4,-27, 0, 9,-29,-13,-10,-22, -1,-24,-16, -5, 22, 5, -6, 2, -5,-22,-29,-21, 5; /M: SY='A'; M= 9,-10,-22,-12, -2,-19,-14, -9,-10, -4,-11, -6, -8, -1, -4, -7, -1, -3, -7,-25,-14, -4; /M: SY='L'; M=-10,-28,-21,-31,-22, 14,-30,-18, 19,-27, 37, 19,-27,-28,-20,-19,-26,-10, 10,-16, 5,-21; /M: SY='V'; M= 0,-24,-15,-27,-25, -4,-25,-26, 22,-19, 8, 8,-23,-22,-23,-20, -8, 2, 31,-27,-10,-25; /M: SY='R'; M= -9, 1,-26, 0, 6,-23,-15, 1,-22, 12,-20, -9, 4,-10, 11, 15, -2, -6,-20,-25,-11, 7; /M: SY='L'; M= -7,-23,-20,-25,-16, 2,-26,-14, 13,-23, 30, 14,-22,-25,-13,-17,-19, -5, 7,-21, -2,-15; /M: SY='L'; M= -8,-28,-20,-30,-21, 6,-29,-19, 22,-26, 38, 24,-27,-27,-18,-19,-25, -8, 15,-21, -1,-20; /M: SY='H'; M= -8, -2,-24, -4, -2,-17,-12, 7,-17, 0,-15, -6, 3,-17, 7, 4, 0, -4,-16,-22, -3, 1; /M: SY='S'; M= -1, 4,-20, 2, 0,-21, -8, 0,-20, 0,-23,-13, 9,-10, 1, 0, 12, 4,-15,-32,-13, -1; /M: SY='P'; M= -5, 4,-26, 6, 7,-24,-12, -5,-23, 0,-23,-16, 2, 9, 1, -5, 2, -1,-22,-28,-15, 2; /I: I=-5; MI=-25; MD=-25; IM=-25; /M: SY='N'; M= -8, 15,-21, 14, 3,-22, -4, 2,-21, -1,-23,-15, 17,-14, -1, -3, 6, -2,-18,-31,-14, 0; D=-5; /I: I=-5; MI=-25; MD=-25; IM=-25; DM=-25; /M: SY='D'; M= -4, 6, -8, 7, 2, -6, -4, 1, -8, 1, -7, -5, 3, -4, 1, 0, 1, -1, -6, -7, -1, 1; D=-5; /I: I=-5; MI=-25; MD=-25; IM=-25; DM=-25; /M: SY='R'; M= -2, 1, -3, 2, 1, -3, -2, 0, -3, 2, -2, -2, 1, -1, 1, 3, -1, -1, -2, -3, -1, 1; D=-5; /I: I=-5; MI=-25; MD=-25; IM=-25; DM=-25; /M: SY='E'; M= -7, -8,-25, -5, 6,-16,-20,-12, -8, -7, -8, -5,-10, 0, 0,-10, -5, -5,-10,-18,-11, 2; D=-5; /I: I=-5; MI=-25; IM=-25; DM=-25; /M: SY='E'; M= -8, 11,-26, 12, 13,-26, -8, -4,-25, 5,-24,-16, 10, -4, 3, 1, 1, -5,-22,-31,-18, 7; /M: SY='I'; M= -5,-26,-20,-31,-25, 3,-31,-25, 28,-24, 18, 13,-23,-24,-21,-22,-15, -3, 26,-22, -3,-24; /M: SY='V'; M= 0,-16,-19,-19,-11,-10,-23,-15, 6,-12, 5, 5,-15,-20, -2,-11, -6, -1, 8,-23, -8, -7; /M: SY='R'; M= -6, -5,-19, -7, 2,-14,-17,-10,-19, 5,-15,-10, -4,-15, 0, 7, -3, -1,-14,-16, -9, 1; /M: M= -1, -7, -9,-10, -6,-16,-14, -8,-12, -9,-15,-10, -4, -8, -5,-12, -1, -3,-10,-24, -8, -7; /M: SY='A'; M= 30, -8, -5,-16,-11,-17, -6,-20,-10,-12,-10,-10, -8,-13,-11,-18, 10, 8, 0,-25,-18,-11; /M: SY='A'; M= 14,-15, -3,-21,-16,-10,-17,-22, 2,-17, -1, -3,-13,-18,-16,-19, 4, 9, 10,-28,-14,-16; /M: SY='G'; M= -2, -9,-18,-10,-14,-20, 15,-17,-26,-11,-20,-14, -7,-20,-12, -9, -4,-11,-19, -4,-15,-13; /M: SY='A'; M= 13,-16, -1,-23,-18, -9,-18,-22, 3,-17, 2, -1,-15,-19,-16,-19, 0, 7, 10,-26,-12,-17; /M: SY='L'; M= -9,-30,-20,-31,-23, 8,-31,-22, 25,-28, 40, 20,-28,-28,-21,-21,-26, -9, 18,-21, -1,-22; /M: SY='R'; M= -9, -7,-20, -9, -3,-16,-10, 6,-24, 2,-20,-11, 0,-18, 3, 12, -1, -6,-19,-17, -5, -2; /M: SY='N'; M=-11, 23,-22, 10, 1,-18, -8, 11,-15, -1,-22,-13, 37,-19, 2, 1, 3, -4,-22,-34,-13, 1; /M: SY='L'; M=-10,-29,-19,-32,-22, 6,-31,-20, 25,-27, 38, 22,-26,-27,-18,-21,-26,-10, 14,-20, 0,-22; /M: SY='S'; M= 17, -7, -9,-12, -9,-15, -9,-17, -9,-12,-14,-11, -3,-13, -9,-15, 20, 18, 0,-31,-16, -9; /M: M= -2,-11, -8,-13, -8,-10,-17, -4,-10, -9, -8, -6, -8,-20, -7, -7, 0, 0, -4,-26, -5, -8; /M: SY='N'; M=-11, 6,-10, 6, -2,-24, -5, 7,-29, -2,-22,-15, 8,-19, -3, 2, -3, -9,-22,-30,-12, -4; /M: SY='N'; M= -8, 7,-26, 7, 7,-24,-13, 4,-23, 5,-22,-14, 9, -3, 3, 4, 0, -4,-21,-30,-14, 4; /M: SY='E'; M= 3, 2,-24, 3, 14,-26,-11, -3,-21, 0,-18,-13, 0, -3, 11, -4, 4, -4,-19,-27,-16, 12; /M: SY='N'; M= -5, 10,-24, 6, 5,-23, 3, -4,-23, 0,-21,-15, 16,-15, 2, -2, 3, -6,-23,-28,-17, 3; /I: I=-6; MI=-32; MD=-32; IM=-32; /M: SY='R'; M= 0, 1,-21, 0, 3,-19,-12, -5,-17, 6,-13, -9, 3,-13, 5, 7, 0, -4,-14,-23,-11, 3; D=-6; /I: I=-6; MI=-32; IM=-32; DM=-32; /M: SY='E'; M= -9, -3,-27, -2, 10,-19,-18, 6,-19, 7,-14, -7, -3, -8, 5, 3, -6, -7,-18,-23, -5, 6; /M: SY='A'; M= 7,-10,-19,-13, -4,-14,-16,-13, -4, -3, -1, 4,-11,-15, -3, -6, -4, -2, -1,-23,-11, -4; /M: SY='I'; M= -2,-23,-25,-28,-18, -6,-28,-23, 23,-19, 11, 10,-18,-12,-15,-21,-14, -7, 15,-22, -7,-19; /M: SY='V'; M= -5,-18,-20,-20,-12, -3,-24,-16, 9,-11, 4, 7,-17,-21, -9, -7,-10, -5, 12,-22, -6,-11; /M: SY='N'; M= -7, 1,-20, -3, 0,-19,-12, -8,-13, 0,-12, -8, 6,-17, 1, 2, -3, -5,-14,-27,-13, -1; /M: SY='S'; M= 9, -1,-18, -2, 6,-20, -9, -4,-17, -5,-15,-11, 0,-11, 4, -8, 11, 2,-13,-27,-13, 5; /M: SY='G'; M= 4, -8,-22,-11,-11,-20, 10,-11,-16,-12,-18,-11, -2,-12, -9,-14, 2, -6,-10,-23,-18,-10; /M: SY='G'; M= 5,-16,-22,-17,-22,-20, 32,-23,-15,-19,-16,-10,-10,-22,-22,-20, -2,-12, -2,-23,-23,-22; /I: E1=0; IE=-105; DE=-105;
Numerical results
UniProtKB/Swiss-Prot release number: 01, total number of sequence entries in that release: 534242. Total number of hits in UniProtKB/Swiss-Prot: 580 hits in 179 different sequences Number of hits on proteins that are known to belong to the set under consideration: 574 hits in 173 different sequences Number of hits on proteins that could potentially belong to the set under consideration: 1 hits in 1 different sequences Number of false hits (on unrelated proteins): 5 hits in 5 different sequences Number of known missed hits: 86 Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0 Precision (true hits / (true hits + false positives)): 99.14 % Recall (true hits / (true hits + false negatives)): 86.97 %
Comments
MATRIX_TYPE: protein_domain Scaling database: UniProtKB/Swiss-Prot: reversed Matrix author: K_Hofmann Taxonomic range: Eukaryotes Maximum known number of repetitions of the pattern in a single protein: 9 FT_KEY: REPEAT FT_DESC: ARM VERSION: 1
Cross-references
UniProtKB/Swiss-Prot	True positive hits: AARA_DICDI (Q54I71), ABAP1_ARATH (B7U179), ADLO1_ARATH (O22161), ADLO2_ARATH (Q9M224), ANKAR_HUMAN (Q7Z5J8), ANKAR_MOUSE (A2RT91), APC_HUMAN (P25054), APC_MOUSE (Q61315), APC_RAT (P70478), ARIA_ARATH (B9DHT4), ARK1_ARATH (Q9SV36), ARK1_ORYSJ (Q0DV28), ARK2_ARATH (Q9LPC6), ARK2_ORYSJ (Q5VQ09), ARK3_ARATH (Q9FZ06), ARMC1_CHICK (Q5ZMQ0), ARMC3_HUMAN (Q5W041), ARMC3_MOUSE (A2AU72), ARMC4_HUMAN (Q5T2S8), ARMC5_HUMAN (Q96C12), ARMC6_HUMAN (Q6NXE6), ARMC6_MOUSE (Q8BNU0), ARMC6_PONAB (Q5RD03), ARMC7_MOUSE (Q3UJZ3), ARMC8_BOVIN (Q2KI54), ARMC8_DANRE (Q05AL1), ARMC8_HUMAN (Q8IUR7), ARMC8_MOUSE (Q9DBR3), ARMC8_PONAB (Q5R6S3), ARMC8_XENLA (Q68FK4), ARMX1_HUMAN (Q9P291), ARMX1_MOUSE (Q9CX83), ARMX1_PONAB (Q5R4B2), ARMX1_RAT (Q5U310), ARMX3_HUMAN (Q9UH62), ARMX3_MOUSE (Q8BHS6), ARMX3_PONAB (Q5R9J3), ARMX3_RAT (Q5XID7), ARM_AEDAE (Q17GS9), ARM_ANOGA (Q7QHW5), ARM_DROME (P18824), ARM_DROPS (Q29I35), ARM_MUSDO (Q02453), ARVC_HUMAN (O00192), ARVC_MOUSE (P98203), BAR1_CAEBR (A8XBZ8), CTNB1_BOVIN (Q0VCX4), CTNB1_HUMAN (P35222), CTNB1_MOUSE (Q02248), CTNB1_RAT (Q9WU82), CTNB_TRIGR (P35223), CTNB_URECA (P35224), CTNB_XENLA (P26233), CTND1_HUMAN (O60716), CTND1_MOUSE (P30999), CTND1_XENLA (Q8AXM9), CTND2_HUMAN (Q9UQB3), CTND2_MOUSE (O35927), CTND2_RAT (O35116), FES1_ASHGO (Q75B89), FES1_GIBZE (Q4I624), FES1_NEUCR (Q9C239), GDS1A_XENLA (O93614), GDS1B_XENLA (Q5PPZ9), GDS1_BOVIN (Q04173), GDS1_HUMAN (P52306), HMP2_CAEEL (O44326), IMA1A_DICDI (Q557F4), IMA1A_ORYSJ (Q71VM4), IMA1B_ORYSJ (Q9SLX0), IMA1_ARATH (Q96321), IMA1_BOVIN (A2VE08), IMA1_CHICK (Q5ZML1), IMA1_HUMAN (P52294), IMA1_MOUSE (Q60960), IMA1_PONAB (Q5R909), IMA1_RAT (P83953), IMA1_SCHPO (O14063), IMA1_XENLA (P52170), IMA1_YEAST (Q02821), IMA2L_HUMAN (A8MYJ9), IMA2_ARATH (O04294), IMA2_CAEEL (P91276), IMA2_HUMAN (P52292), IMA2_MOUSE (P52293), IMA2_SCHPO (O94374), IMA2_XENLA (P52171), IMA3_CAEEL (Q19969), IMA3_HUMAN (O00505), IMA3_MOUSE (O35344), IMA4_HUMAN (O00629), IMA4_MOUSE (O35343), IMA5_DANRE (Q503E9), IMA5_HUMAN (O15131), IMA5_RAT (Q56R16), IMA7_BOVIN (Q0V7M0), IMA7_HUMAN (O60684), IMA7_MOUSE (O35345), IMA7_PONAB (Q5RBV0), IMA8_BOVIN (C1JZ66), IMA8_HUMAN (A9QM74), IMA8_MOUSE (C0LLJ0), IMA8_PIG (C6K7I2), IMAB_DICDI (Q76P29), IMA_DROME (P52295), IMA_SOLLC (O22478), JAC1_CAEEL (Q9U308), KIFA3_HUMAN (Q92845), KIFA3_MOUSE (P70188), KIFA3_STRPU (Q26626), PKP1_BOVIN (Q28161), PKP1_HUMAN (Q13835), PKP1_MOUSE (P97350), PKP2_HUMAN (Q99959), PKP3_BOVIN (Q08DQ0), PKP3_HUMAN (Q9Y446), PKP3_MOUSE (Q9QY23), PKP4_HUMAN (Q99569), PKP4_MOUSE (Q68FH0), PLAK_BOVIN (Q8SPJ1), PLAK_HUMAN (P14923), PLAK_MOUSE (Q02257), PLAK_PIG (Q8WNW3), PLAK_RAT (Q6P0K8), PLAK_XENLA (P30998), PUB04_ORYSJ (Q6EUK7), PUB10_ARATH (Q9C9A6), PUB11_ARATH (Q8GUG9), PUB12_ARATH (Q9ZV31), PUB12_ORYSJ (Q5VRH9), PUB13_ARATH (Q9SNC6), PUB14_ARATH (Q8VZ40), PUB15_ARATH (Q681N2), PUB16_ARATH (Q9LZW3), PUB17_ARATH (Q9C7R6), PUB18_ARATH (Q9XIJ5), PUB19_ARATH (O80742), PUB2_ARATH (Q5XEZ8), PUB39_ARATH (Q9STT1), PUB3_ARATH (Q8GWV5), PUB40_ARATH (Q9FL17), PUB41_ARATH (Q0WUF6), PUB43_ARATH (Q9SFX2), PUB44_ARATH (Q9LM76), PUB45_ARATH (Q9C7G1), PUB4_ARATH (O22193), PUB6_ARATH (O48700), PUB7_ARATH (Q9CAG5), SL11_ORYSI (A2ZLU6), SL11_ORYSJ (Q0IMG9), USO1_BOVIN (P41541), USO1_HUMAN (O60763), USO1_MOUSE (Q9Z1Z0), USO1_RAT (P41542), VAC8_ASHGO (Q757R0), VAC8_ASPFU (Q4WVW4), VAC8_ASPOR (Q2U5T5), VAC8_CANAL (Q59MN0), VAC8_CANGA (Q6FJV1), VAC8_CHAGB (Q2GW27), VAC8_CRYNB (P0CM61), VAC8_CRYNJ (P0CM60), VAC8_DEBHA (Q6BTZ4), VAC8_GIBZE (Q4I1B1), VAC8_KLULA (Q6CX49), VAC8_NEUCR (Q7RXW1), VAC8_PICPA (Q5EFZ4), VAC8_SCHPO (O43028), VAC8_YARLI (Q6C5Y8), VAC8_YEAST (P39968), WRM1_CAEBR (A8X811), YGQ3_SCHPO (Q9P7W7), ZY11A_MOUSE (A2BFL2) False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile): APC2_HUMAN (O95996), APC2_MOUSE (Q9Z1K7), APC_XENLA (P70039), APR1_CAEEL (Q21227), ARM10_HUMAN (Q8N2F6), ARM10_MOUSE (Q9D0L7), ARM10_RAT (B1WBW4), ARMC1_BOVIN (Q3ZBE1), ARMC1_HUMAN (Q9NVT9), ARMC1_MOUSE (Q9D7A8), ARMC1_PONAB (Q5RCR8), ARMC2_BOVIN (P0C6R2), ARMC2_HUMAN (Q8NEN0), ARMC2_MOUSE (Q3URY6), ARMC5_MOUSE (Q5EBP3), ARMC5_RAT (Q5PQP9), ARMC6_DROME (Q7K486), ARMC7_HUMAN (Q9H6L4), ARMX2_HUMAN (Q7L311), ARMX2_MOUSE (Q6A058), ARMX5_HUMAN (Q6P1M9), ARMX5_MOUSE (Q3UZB0), ARMX5_PONAB (Q5RDG2), BAR1_CAEEL (Q18825), CF081_HUMAN (Q5T9G4), CF081_MOUSE (Q80X86), DARA_DICDI (O76187), DOA1_YEAST (P36037), FES1_ASPFU (Q4WDH3), FES1_ASPNC (A2R4I6), FES1_ASPOR (Q2U9E2), FES1_ASPTN (Q0CH70), FES1_CANAL (Q59NN8), FES1_CANGA (Q6FM01), FES1_CHAGB (Q2GXZ7), FES1_COCIM (Q1E3S4), FES1_CRYNB (P0CN69), FES1_CRYNJ (P0CN68), FES1_DEBHA (Q6BLA1), FES1_EMENI (Q5AYT7), FES1_KLULA (Q6CNM7), FES1_NEOFI (A1DLW4), FES1_PHANO (Q0V4C4), FES1_PICST (A3LUY1), FES1_SCHPO (O43030), FES1_USTMA (Q4P7F2), FES1_YARLI (Q6C239), FES1_YEAST (P38260), HPBP1_HUMAN (Q9NZL4), HPBP1_MACFA (Q4R588), HPBP1_MOUSE (Q99P31), HPBP1_RAT (Q6IMX7), IMA2_ORYSJ (Q9FYP9), NEK10_HUMAN (Q6ZWH5), PLAP_HUMAN (Q9Y263), PLAP_MOUSE (P27612), PLAP_RAT (P54319), PLAP_XENLA (Q6GM65), PUB21_ARATH (Q5PNY6), PUB23_ARATH (Q84TG3), PUB27_ARATH (Q9FLF4), PUB28_ARATH (Q9LXE3), PUB29_ARATH (Q9LSA6), PUB30_ARATH (Q058P4), PUB31_ARATH (Q9FHN9), PUB38_ARATH (Q9FJP6), PUB42_ARATH (Q9CAA7), PUB46_ARATH (Q3E9F7), PUB48_ARATH (Q3E9F5), PUB5_ARATH (O23225), PUB8_ARATH (O81902), PUB9_ARATH (Q9SRT0), SPAG6_HUMAN (O75602), SPAG6_MOUSE (Q9JLI7), UN45B_DANRE (Q6DGE9), UN45B_HUMAN (Q8IWX7), UN45B_MOUSE (Q8CGY6), UN45B_XENLA (Q68F64), UN45B_XENTR (D7REX8), UPL3_ARATH (Q6WWW4), UPL4_ARATH (Q9LYZ7), USO1_YEAST (P25386), WRM1_CAEEL (Q10953), ZER1_HUMAN (Q7Z7L7), ZER1_MOUSE (Q80ZJ6), ZER1_PONAB (Q5RAG3) Sequences which could potentially belong to the set under consideration: VATH_DICDI (Q8MML6) False positive hits (sequences which do not belong to the set under consideration): CCD79_MOUSE (Q8C0V1), CHAO_DROME (P12024), DOHH_SCHPO (Q9P6K9), FLII_BACSU (P23445), PECF_MASLA (P29730) Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits: [Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format] Retrieve the sequence logo from the alignment
PDB [Detailed view]	1BK5; 1BK6; 1EE4; 1EE5; 1EJL; 1EJY; 1G3J; 1I7W; 1I7X; 1IAL; 1IQ1; 1JDH; 1JPP; 1JPW; 1LUJ; 1M1E; 1PJM; 1PJN; 1Q1S; 1Q1T; 1QZ7; 1T08; 1TH1; 1UN0; 1V18; 1WA5; 1XM9; 1Y2A; 2BCT; 2C1M; 2C1T; 2GL7; 2JDQ; 2W3C; 2Z6H; 3AU3; 3BCT; 3BTR; 3FEX; 3FEY; 3GQ2; 3GRL; 3IFQ; 3KND; 3L3Q; 3L6X; 3L6Y; 3NMW; 3NMX; 3NMZ; 3OQS; 3OUW; 3OUX; 3Q5U; 3QHE; 3RZ9; 3RZX; 3TJ3; 3TPM; 3TPO;

View entry in original PROSITE format
View entry in raw text format (no links)

If you would like to retrieve all the Swiss-Prot entries referenced in the DR lines of this entry (with the exception of false positive hits) , you can enter a file name. These entries will then be saved to a file under this name. (Please note that this temporary file will only be kept for 1 week.)

Swiss Institute of Bioinformatics | Disclaimer

Back to the Top