Entry: PS50803

General information about the entry

Entry name [info] OAR
Accession [info] PS50803
Entry type [info] MATRIX
Date [info] DEC-2001 (CREATED); APR-2015 (DATA UPDATE); JUN-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC50803
Associated ProRule [info] PRU00138

Name and characterization of the entry

Description [info] OAR domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=14;
/DISJOINT: DEFINITION=PROTECT; N1=2; N2=13;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.8701861; R2=0.0078508; TEXT='-LogE';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=863.7844238; R2=0.1522222; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=781; H_SCORE=983; N_SCORE=9.0; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=463; H_SCORE=934; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-146; D=-75; I=-75; B1=-750; E1=-750; MI=-380; MD=-380; IM=-380; DM=-380;
...
                A    C    D    E    F    G    H    I    K    L    M    N    P    Q    R    S    T    V    W    Y
/I:         B1=0; BI=-380; BD=-380;
/M: SY='S'; M= -20,  27, -68, -34,-240,-177,  46,-164,-183,  39,-230,   3,-246,-254,-242,  68,  57,-233,-122,-238;
/M: SY='S'; M=-219,-242,-233,-234,-252, -30,-236,-252,-234,-255,-248, -32,-241,-226,-239, 118,-214,-244,-260,-244;
/M: SY='I'; M=-238,-249,-255,-254,-228,-261,-256,  97,-250,  15,-216,-246,-249,-249,-254,-239,  62,  -7,-106,-235;
/M: SY='A'; M=  87,-244, -20,  -2,-255,-232,-239,-244,-232,-245,-238, -90,-243,  78,-235, -18, -17, -54,-254,-245;
/M: SY='R'; M=  38,  28,-121, -21,-252,-237,-178,-249, -13, -46,-242,  22,-129,-182,  62,  60, -25,-111,-259,-244;
/I:         I=-23; MD=-115;
/M: SY='L'; M=-257,-259,-274,-266,-136,-276,-258,-221,-268,  89,-218,-273,-162,-260,-265,-267,-253,-131,-261,-243; D=-23;
/I:         I=-23; MI=-115; IM=-115; DM=-115;
/M: SY='R'; M= -11,-259,-241,-229,-253,-252,-230,-259,-202,-252,-241,-234,-252,-218, 125,-237,-242,-251,-253,-240;
/M: SY='M'; M=   0,-250,-251,-241,-115,-252,  11,  -6,-146,  25, 114,-243,-190, -29,  73,-188,-239,-227,-251, -52;
/M: SY='K'; M=-146,-255,-233,-220,-256,-247,-234,-257, 115,-255,-243, -61,-242,-217,  38,-234,-235,-252,-250,-242;
/M: SY='A'; M=  84,-243,-247,-240,-242, -56,-245,-233,-242,  40,-229,-242,  29,-238,-246,  25,-230,-229,-253,-244;
/M: SY='K'; M=-235,-253,-234,  24,-251,  40,-220,-183,  70,  -6,-239,-230,-244,   4,  42,  21,-236, -52,-253,-243;
/M: SY='E'; M=-162,-259,  59,  96,-260,-249,  61,-261, -21,-254,-247,-226,-238,  55,  20,-233,-238,-256,-261,-243;
/M: SY='H'; M= -60,-255,-235,-234, -55,-245, 141,-252,-237, -56,-231,-227,-123,   0,-211,-234,-242,-250,-254,  58;
/M: SY='S'; M=  90,  15,-232,  20,-250,-233, -93, -70, -46, -57, -90,  17, -90, -14,-238,  85,  23, -61,-259,-245;
/I:         E1=0; IE=-380; DE=-380;
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_07 which contains 551'705 sequence entries.


Total number of hits 80 in 80 different sequences
Number of true positive hits 80 in 80 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Feature key [info] MOTIF
Feature description [info] OAR
Version [info] 4

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
80 sequences

ALX1_DANRE  (Q1LVQ7    ), ALX1_GEOFO  (P0DMV5    ), ALX1_HUMAN  (Q15699    ), 
ALX1_MOUSE  (Q8C8B0    ), ALX1_RAT    (Q63087    ), ALX1_XENLA  (Q91574    ), 
ALX4_BOVIN  (Q4LAL6    ), ALX4_HUMAN  (Q9H161    ), ALX4_MOUSE  (O35137    ), 
AL_DROME    (Q06453    ), ARX_DANRE   (O42115    ), ARX_HUMAN   (Q96QS3    ), 
ARX_MOUSE   (O35085    ), ARX_RAT     (A6YP92    ), DMBX1_CHICK (F1NEA7    ), 
DMBX1_HUMAN (Q8NFW5    ), DMBX1_MOUSE (Q91ZK4    ), DMX1A_DANRE (Q8JI10    ), 
DMX1B_DANRE (Q566X8    ), DRGX_HUMAN  (A6NNA5    ), DRGX_MOUSE  (Q8BYH0    ), 
DRGX_RAT    (Q62798    ), OTBP_DANRE  (Q6DGH9    ), OTP_DROME   (P56672    ), 
OTP_HELER   (Q6SR69    ), OTP_HELTB   (Q6SR68    ), OTP_HUMAN   (Q5XKR4    ), 
OTP_LYTVA   (Q6SZ65    ), OTP_MOUSE   (O09113    ), OTP_PARLI   (O76971    ), 
OTP_SACKO   (Q7YTC2    ), PAX7_HUMAN  (P23759    ), PAX7_MOUSE  (P47239    ), 
PITX1_CHICK (P56673    ), PITX1_HUMAN (P78337    ), PITX1_MOUSE (P70314    ), 
PITX1_RAT   (Q99NA7    ), PITX1_XENLA (Q9W751    ), PITX2_CHICK (O93385    ), 
PITX2_DANRE (Q9W5Z2    ), PITX2_HUMAN (Q99697    ), PITX2_MOUSE (P97474    ), 
PITX2_RAT   (Q9R0W1    ), PITX2_XENLA (Q9PWR3    ), PITX3_DANRE (Q6QU75    ), 
PITX3_HUMAN (O75364    ), PITX3_MOUSE (O35160    ), PITX3_RAT   (P81062    ), 
PITX3_XENLA (Q9I8K3    ), PITX_BRABE  (Q9U637    ), PITX_DROME  (O18400    ), 
PRRX1_CHICK (Q05437    ), PRRX1_HUMAN (P54821    ), PRRX1_MOUSE (P63013    ), 
PRRX1_RAT   (P63014    ), PRRX2_CHICK (Q90963    ), PRRX2_HUMAN (Q99811    ), 
PRRX2_MOUSE (Q06348    ), RX1_ASTFA   (Q9I9D5    ), RX1_CHICK   (Q9PVY0    ), 
RX1_DANRE   (O42356    ), RX2_CHICK   (Q9PVX0    ), RX2_DANRE   (O42357    ), 
RX2_ORYLA   (Q9I9A2    ), RX3_DANRE   (O42358    ), RXA_XENLA   (O42201    ), 
RXB_XENLA   (O42567    ), RX_DROME    (Q9W2Q1    ), RX_HUMAN    (Q9Y2V3    ), 
RX_MOUSE    (O35602    ), RX_RAT      (Q9JLT7    ), SHOX2_HUMAN (O60902    ), 
SHOX2_MOUSE (P70390    ), SHOX2_RAT   (O35750    ), SHOX_HUMAN  (O15266    ), 
VSX2_CHICK  (Q9IAL1    ), VSX2_DANRE  (O42477    ), VSX2_HUMAN  (P58304    ), 
VSX2_MOUSE  (Q61412    ), VSX2_ORYLA  (Q9I9A3    )
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