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Entry: PS50884

General information about the entry

Entry name [info] ZF_DOF_2
Accession [info] PS50884
Entry type [info] MATRIX
Date [info] 01-JAN-2003 CREATED; 10-MAY-2017 DATA UPDATE; 22-NOV-2017 INFO UPDATE.
PROSITE Doc. [info] PDOC50884
Associated ProRule [info] PRU00071

Name and characterization of the entry

Description [info] Zinc finger Dof-type profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=55;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=50;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.3707771; R2=0.0093185; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=5955.9526367; R2=4.7031350; PRIORITY=1; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=1356; H_SCORE=12333; N_SCORE=15.0; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=658; H_SCORE=9051; N_SCORE=8.5; MODE=1; TEXT='?';
/DEFAULT: M0=-9; D=-40; I=-40; B1=-500; E1=-500; MI=-105; MD=-105; IM=-105; DM=-105;
...
                A   B   C   D   E   F   G   H   I   K   L   M   N   P   Q   R   S   T   V   W   Y   Z
/I:         B1=0; BI=-105; BD=-105;
/M: SY='L'; M=-12,-21,-23,-20,-13, -3,-26,-15,  5,-13, 22,  8,-19,-21,-10,  1,-20, -9,  1,-22, -5,-13;
/M: SY='P'; M= -5,-11,-23, -9, -5,-21,-18,-16,-12,  0,-20,-12, -8, 21, -9, -7, -4, -5, -9,-30,-20, -9;
/M: SY='C'; M=-10,-20,115,-30,-30,-19,-30,-29,-28,-29,-19,-17,-20,-39,-29,-29,-10,-10, -9,-49,-29,-29;
/M: SY='P'; M= -6,-19,-37,-10, -1,-29,-18,-20,-19,-10,-29,-19,-18, 81,-10,-20, -7, -8,-27,-30,-29,-10;
/M: SY='R'; M=-20,-10,-30,-10,  0,-20,-20,  0,-30, 30,-20,-10,  0,-20, 10, 70,-10,-10,-20,-20,-10,  0;
/M: SY='C'; M=-10,-20,120,-30,-30,-20,-30,-30,-30,-30,-20,-20,-20,-40,-30,-30,-10,-10,-10,-50,-30,-30;
/M: SY='D'; M=-12, 20,-27, 21,  7,-22, -4,  2,-27,  2,-24,-19, 18,-16,  0,  1,  0, -8,-26,-26, -8,  3;
/M: SY='S'; M= 10,  0,-10,  0,  0,-20,  0,-10,-20,-10,-30,-20, 10,-10,  0,-10, 40, 20,-10,-40,-20,  0;
/M: SY='T'; M= -7,  2,-21,  2, -4,-18,-15, -9,-14, -2,-11, -3, -1,-12, -3,  3,  1,  5, -8,-28,-12, -5;
/M: SY='N'; M=-12, 29,-25, 26, 16,-28, -9,  7,-26,  4,-26,-19, 31,-13, 11,  0,  5, -4,-29,-35,-17, 13;
/M: SY='T'; M=  0,  0,-10,-10,-10,-10,-20,-20,-10,-10,-10,-10,  0,-10,-10,-10, 20, 50,  0,-30,-10,-10;
/M: SY='K'; M=-11, -1,-30, -1,  9,-29,-20, -9,-30, 48,-29,-10,  0,-11, 10, 35,-10,-10,-20,-20,-10,  9;
/M: SY='F'; M=-20,-30,-20,-40,-30, 80,-30,-20,  0,-30, 10,  0,-20,-30,-40,-20,-20,-10,  0, 10, 30,-30;
/M: SY='C'; M= -8,-18,104,-26,-26,-20,-26,-28,-29,-28,-21,-20,-16,-36,-26,-28, -4, -6,-10,-49,-29,-26;
/M: SY='Y'; M=-20,-20,-30,-20,-20, 31,-30, 19,  0,-10,  0,  0,-20,-30,-11,-10,-20,-10,-10, 30, 79,-20;
/M: SY='Y'; M=-20,-24,-26,-28,-24, 50,-30,  4,  0,-18,  4,  0,-20,-30,-22,-14,-20,-10, -6, 22, 60,-24;
/M: SY='N'; M=-10, 40,-20, 20,  0,-20,  0, 10,-20,  0,-30,-20, 60,-20,  0,  0, 10,  0,-30,-40,-20,  0;
/M: SY='N'; M=-10, 40,-20, 20,  0,-20,  0, 10,-20,  0,-30,-20, 60,-20,  0,  0, 10,  0,-30,-40,-20,  0;
/M: SY='Y'; M=-19,-13,-29,-15,-18, 24,-26, 19, -2, -9, -4, -2,-10,-29, -9, -9,-16, -9,-12, 22, 68,-18;
/M: SY='N'; M= -3, 20,-13,  9,  0,-21, -3,  0,-22,  2,-30,-19, 34,-16,  0, -1, 17,  5,-22,-38,-19,  0;
/M: SY='L'; M= -6,-21,-18,-22,-13, -1,-27,-20, 12,-12, 16, 10,-22,-24,-16,-12,-16, -5, 16,-24, -6,-14;
/M: SY='S'; M=  2,  7,-15, -1, -4,-13, -6, -4,-18, -6,-23,-16, 18,-15, -3, -3, 19, 12,-14,-32,-14, -4;
/M: SY='Q'; M=-10,  0,-30,  0, 20,-40,-20, 10,-20, 10,-20,  0,  0,-10, 60, 10,  0,-10,-30,-20,-10, 40;
/M: SY='P'; M=-10,-20,-40,-10,  0,-30,-20,-20,-20,-10,-30,-20,-20, 90,-10,-20,-10,-10,-30,-30,-30,-10;
/M: SY='R'; M=-20,-10,-30,-10,  0,-20,-20,  0,-30, 30,-20,-10,  0,-20, 10, 70,-10,-10,-20,-20,-10,  0;
/M: SY='H'; M=-20, -9,-30, -9, -9,  2,-24, 65,-17,-10,-11,  0, -3,-24,  1, -4,-14,-16,-21, -4, 46, -9;
/M: SY='F'; M=-18,-26,-22,-33,-24, 57,-29,-17, -2,-19,  9,  1,-19,-28,-30,-13,-20,-10, -2,  4, 25,-24;
/M: SY='C'; M=-10,-20,120,-30,-30,-20,-30,-30,-30,-30,-20,-20,-20,-40,-30,-30,-10,-10,-10,-50,-30,-30;
/M: SY='K'; M=-12, -2,-30, -2,  8,-28,-20, -8,-30, 46,-28,-10,  0,-12, 10, 38,-10,-10,-20,-20,-10,  8;
/M: SY='N'; M=  9, 12,-16,  2, -2,-21,  2, -5,-19, -5,-24,-17, 21,-14, -3, -8, 15,  5,-17,-32,-19, -3;
/M: SY='C'; M=-10,-20,120,-30,-30,-20,-30,-30,-30,-30,-20,-20,-20,-40,-30,-30,-10,-10,-10,-50,-30,-30;
/M: SY='R'; M=-17, -8,-12, -9,  0,-24,-21,  8,-28, 16,-20, -8, -1,-20, 14, 39, -8,-11,-22,-25, -9,  4;
/M: SY='R'; M=-20,-10,-30,-10,  0,-20,-20,  0,-30, 30,-20,-10,  0,-20, 10, 70,-10,-10,-20,-20,-10,  0;
/M: SY='Y'; M=-19,-20,-12,-21,-21, 24,-30, 14, -4,-12, -2, -2,-20,-31,-12,-12,-19,-10,-10, 20, 67,-21;
/M: SY='W'; M=-20,-40,-50,-40,-30, 10,-20,-30,-20,-20,-20,-20,-40,-30,-20,-20,-40,-30,-30,150, 30,-20;
/M: SY='T'; M=  0,  0,-10,-10,-10,-10,-20,-20,-10,-10,-10,-10,  0,-10,-10,-10, 20, 50,  0,-30,-10,-10;
/M: SY='H'; M=  7, -4,-23, -7,  3,-23,-13, 18,-23,  6,-18, -8, -1,-13,  7,  7, -1, -9,-17,-24, -6,  3;
/M: SY='G'; M=  0,-10,-30,-10,-20,-30, 70,-20,-40,-20,-30,-20,  0,-20,-20,-20,  0,-20,-30,-20,-30,-20;
/M: SY='G'; M=  0,-10,-30,-10,-20,-30, 70,-20,-40,-20,-30,-20,  0,-20,-20,-20,  0,-20,-30,-20,-30,-20;
/M: SY='A'; M= 24, -9,-10,-15,-11,-15, -8,-19, -6,-12,-11, -9, -6,-13,-11,-16, 16, 13,  5,-28,-17,-11;
/M: SY='L'; M= -8,-26,-19,-28,-18,  6,-26,-16, 17,-25, 38, 23,-25,-27,-15,-18,-22, -7,  9,-22, -2,-17;
/M: SY='R'; M=-14,-10,-28,-11, -1,-20,-18, -2,-28, 27,-19,-10, -1,-19,  8, 62, -8, -9,-18,-20,-11, -1;
/M: SY='N'; M= -9, 30,-20, 15,  0,-20, -5,  4,-19,  0,-26,-18, 44,-18, -1,  2, 10,  4,-24,-37,-18, -1;
/M: SY='V'; M= -2,-27,-16,-30,-27, -2,-30,-28, 32,-22, 10, 10,-24,-25,-25,-22, -9, -1, 39,-28, -8,-27;
/M: SY='P'; M= -6,-19,-38,-11, -1,-29,-19,-20,-19,-10,-29,-19,-19, 83,-10,-20, -9, -9,-28,-29,-29,-10;
/M: SY='V'; M=  0,-25,-14,-27,-25, -3,-27,-27, 26,-20,  6,  7,-22,-25,-24,-20, -4,  1, 37,-30,-10,-25;
/M: SY='G'; M=  8, -9,-24,-12,-17,-26, 48,-20,-32,-17,-24,-17, -2,-17,-17,-19,  4, -8,-22,-21,-26,-17;
/M: SY='G'; M=  8,-10,-25,-10,-14,-27, 43,-19,-31,-16,-27,-18, -2, -8,-15,-19,  6,-11,-23,-23,-27,-15;
/M: SY='G'; M=  4,-12,-26,-14,-16,-23, 32,-20,-21,-18,-21,-14, -4,-10,-16,-19,  3,-10,-16,-24,-24,-17;
/M: SY='C'; M= -3,-11, 23,-16,-14,-16,-13,-16,-23, -9,-19,-14, -7,-23,-12, -2,  3,  2,-11,-31,-15,-14;
/M: SY='R'; M=-14, -3,-28, -1,  2,-22,-17, -2,-30, 23,-20,-12,  2,-18,  7, 53, -7, -9,-20,-22,-12,  0;
/M: SY='K'; M= -9, -2,-28, -3,  5,-26,-18, -7,-28, 38,-26,-10,  2,-13,  8, 37, -8, -9,-19,-21,-11,  5;
/M: SY='N'; M= -4, 12,-19,  5,  0,-21, -7,  0,-21,  3,-27,-16, 23,-11,  1,  4, 14,  8,-19,-34,-16,  0;
/M: SY='K'; M= -7,  1,-25, -2,  1,-24,-16, -9,-20, 22,-24,-11,  5, -6,  1, 15, -3, -5,-14,-26,-14,  0;
/M: SY='R'; M= -8, -8,-26, -8, -3,-19,-13, -2,-20,  9,-15, -9, -2, -6,  0, 17, -5, -6,-17,-25,-12, -4;
/I:         E1=0; IE=-105; DE=-105;
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2017_11 which contains 556'196 sequence entries.


Total number of hits 43 in 43 different sequences
Number of true positive hits 43 in 43 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] window20
Author [info] N_Hulo
Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Feature key [info] ZN_FING
Feature description [info] Dof-type
Version [info] 5

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
43 sequences

CDF1_ARATH  (Q8W1E3    ), CDF2_ARATH  (Q93ZL5    ), CDF3_ARATH  (Q8LFV3    ), 
CDF4_ARATH  (O22967    ), CDF5_ARATH  (Q9SEZ3    ), DOF11_ARATH (Q8L9V6    ), 
DOF12_ARATH (P68349    ), DOF13_ARATH (Q9LQX4    ), DOF14_ARATH (Q9FZA4    ), 
DOF15_ARATH (P68350    ), DOF16_ARATH (Q9SX97    ), DOF17_ARATH (O82155    ), 
DOF18_ARATH (Q84JQ8    ), DOF1_ORYSJ  (Q9SXG8    ), DOF21_ARATH (Q8LE43    ), 
DOF22_ARATH (Q9ZV33    ), DOF24_ARATH (O80928    ), DOF25_ARATH (Q9ZPY0    ), 
DOF2_ORYSJ  (B9F1L8    ), DOF31_ARATH (Q94AR6    ), DOF32_ARATH (Q9M1E6    ), 
DOF34_ARATH (Q39088    ), DOF35_ARATH (Q9SVC5    ), DOF36_ARATH (Q9M2U1    ), 
DOF37_ARATH (Q43385    ), DOF3_ORYSJ  (Q6K537    ), DOF41_ARATH (Q9M161    ), 
DOF42_ARATH (Q9SUB1    ), DOF43_ARATH (Q9SUB0    ), DOF44_ARATH (Q9SUA9    ), 
DOF45_ARATH (O49550    ), DOF46_ARATH (Q8LAP8    ), DOF47_ARATH (Q84K52    ), 
DOF4_ORYSJ  (Q6Z345    ), DOF51_ARATH (Q9LZ56    ), DOF53_ARATH (Q84TE9    ), 
DOF54_ARATH (Q8LDR0    ), DOF56_ARATH (Q9FM03    ), DOF57_ARATH (Q9LSL6    ), 
DOF58_ARATH (Q9FGD6    ), DOF5_ORYSJ  (Q5JLR7    ), MNB1A_MAIZE (P38564    ), 
PBF_MAIZE   (O24463    )
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