Entry: PS50930

Forthcoming changes to the profile format
General information about the entry

Entry name [info] HTH_LYTTR
Accession [info] PS50930
Entry type [info] MATRIX
Date [info] OCT-2003 (CREATED); OCT-2013 (DATA UPDATE); SEP-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC50930
Associated ProRule [info] PRU00112

Name and characterization of the entry

Description [info] LytTR-type HTH domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=112;
/DISJOINT: DEFINITION=PROTECT; N1=1; N2=112;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.8881738; R2=0.0002640; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=643070.18429; R2=12.39177; TEXT='HScore';
/CUT_OFF: LEVEL=0; SCORE=23155; N_SCORE=9.0; H_SCORE=1070760; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=13684; N_SCORE=6.5; H_SCORE=812602; MODE=1; TEXT='?';
/DEFAULT: B1=*; E1=*; MM=*; II=*;
...
                A     C     D     E     F     G     H     I     K     L     M     N     P     Q     R     S     T     V     W     Y
/I:         B1=-8455; E0=*; BM=-49; BD=-4907;
/M: SY='I'; M= -147,-3069,-5651,-5025, 2165,-4910,-3769, 2654,-4642, 1498,  834, -259,-4858,-4168,-4415,-4016,-3230,-2184,-3463,-3201; M0=-2387;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='P'; M=  420,-3573, -364,  398,-3842,-1190,-1888, -656, -316,-1296,-2676,  739, 1841,-1447,-1989,  652,  716, -169, 1329,   75; M0=-484;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='V'; M=  184, 1076,-4802,-4166, 1157, -190,-2877, 1302,-3762, 1015,-1488,-3651,-4056,-3385, -638, -955,-2399, 1625,-2743, 1394; M0=-1230;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='K'; M= -749,-3684,-2068,  753, -446,-3193,-1852,-1225, 2186,-3699,-2774,  716, -593,  216, 1145,  342,  306,-1280,-3869,  -91; M0=-832;
/I:         MM=-50; MI=-10019; MD=-4908; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='K'; M=-2248,-3050,  425,-1916,-3158, -820,-2060, 1810, 1842, -537,-2200,-2153, -572,-1735, -310,   73,  603,   70,-3376,  119; M0=-646;
/I:         MM=-3277; MI=-9970; MD=-159; IM=-894; II=-1115; DM=-384; DD=-2098;
/M: SY='L'; M=-1953,-1581,-4240,-3771, -838,-3836,-2963,  604,-3475, 2338,  294,-3524,-3602,-2974,-3323,-3092,-1913, 2172,-2289,-2112; M0=-1863;
/I:         MM=-15; MI=-7119; MD=-8161; IM=-894; II=-1115; DM=-31; DD=-5553;
/M: SY='G'; M= -749,-3691, 1620,  796,-4012, 1672,  722,-3763,  883,-1327,-2780,  622,-3285,  217,   53, -706,-2157,-3313,-3874,   -3; M0=-931;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='E'; M= -694,-3690,  333, 1197, -326,  859,  628, -636, 1188,-3706,-2779, -134,-3285,-1390, 1129,  794,   16,-3312,-3874,-3191; M0=-814;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='R'; M=  444,-3691,-2066, -379,-4012,  613,-1851,-3762,  397, -588,-2780, 1138,-3286, 1559, 1634,  927, -375,-3313,-3874,-3192; M0=-923;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='I'; M=-2438,-2358,  285,-3663, -357, -823,-2763, 1918,-3362, -829,  684,-3387,  859, -154,  372,  -53,  218, 1337,-2806, -116; M0=-766;
/I:         MM=-51; MI=-10019; MD=-4897; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='Y'; M=-2415, 1016,-4710,  306, 2102,-3957, 1462, 1123, -748, -152,-1451,-3586, -592,-3316,-3501,-3039,-2355,  760,-2705, 2662; M0=-1336;
/I:         MM=-2; MI=-9970; MD=-11012; IM=-894; II=-1115; DM=-382; DD=-2102;
/M: SY='L'; M=-2446,-2326,-4472,-3856,    1,-3957,-2810,  322, 1098, 1390,  656,-3493,  427, -168, -490,  611,  202,  492,-2779,  199; M0=-920;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='V'; M= -832,-2297,-4817,-4182,  650,-4021,-2893, 1944,-3777, 1087,  699,-3667,-4070, -293,-3577,-3106, -105, 2069,-2757,  231; M0=-1616;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='P'; M=  396,-3692, 1434,  782,-4014,-3192,-1851,-3764,  379,-1393,-2782, 1130, 1835,  907,  428,  -50,-2158,-3314,-3876,-3193; M0=-1014;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='I'; M= -735,-2297,-4698,-4069,  -25,-1050,-2857, 2213, -987,  108,  785,-3603,  955, -285, -624,-3071, 1146,  -24,-2753, 1074; M0=-958;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='D'; M=  793,-3691, 1725,   -9,-4012, -152, 1308,-3763, 1219,-3707,-2780,  817,-1512,   95,  400,  458, -473,-3313,-3874,-3191; M0=-986;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='D'; M= -783,-3936, 3003, 1690,-4251,-3335,-2050,-4008,  662,-3949,-3032,  591,-3468, -638, -344, -584,-2387,-3556,-4116,-3419; M0=-1698;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='I'; M=-1815,-3820,-7033,-6717,-4410,-6894,-6936, 3353,-6695,  608,-3096,-6551,-6600,-6618,-6859,-6282,-4329, 1871,-6214,-5736; M0=-4113;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='Y'; M= -713,-2320, -719, -821,  739,-3964,  509, 1731,-3554, 1639,  727,-3517,-4017, -326,-3451,-3036, -404,-1736,-2773, 2111; M0=-1226;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='Y'; M=  -61,-2303,-4664,-4037, 2155,-1038,-2850,-1798,-3662,-1061,  443,-3588,-4039,-3311,  250,  -74,  310,-1717, 2387, 3266; M0=-1450;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='F'; M=  604,-3704,-6668,-6197, 2098,-6237,-5474, 1921,-5983, 1298,-2479,-5893,-6025,-5597,-5882,-5467,-4086, 1924,-4949,-4675; M0=-3218;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='E'; M= -694,-3639,-2093, 2574,-3937, -155,  627, -361,-1456,-3645,-2735,-1850,-3298, 1711, -342,  737,-2162, -874,-3837,  -87; M0=-1106;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='T'; M= 1897, 1089,-4737,-4130,-2382, -976,-2958, -404,-3758,-2275,  639,-3651, -575,-3406,-3608, 1153, 2075,  216,-2879,-2535; M0=-1442;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='H'; M=   -2,  927,  686,  695, -391,-3195, 2584, -894,-1437,-3689,-2767,  493,-3288, 1295, -224, 1295, -456, -866,-3863,-3184; M0=-866;
/I:         MM=-1633; MI=-10019; MD=-564; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='K'; M=-1360,-2659,-1139, -730,-3208,  431,-1066,-2937, 2395,-2896,-2006,  947, 1818, -630,-1034,-1272,  817,-2470,-3061,-2427; M0=-992;
/I:         MM=-6; MI=-8392; MD=-9434; IM=-894; II=-1115; DM=-4541; DD=-63;
/M: SY='T'; M=-1175,-2062,-1338,  548,-2210,-2246, -899,-1828,  933, 1075,-1205,-1006,-2326, -544,  970,-1195, 1673,  505,-2350,-1824; M0=-578;
/I:         MM=-1030; MI=-8392; MD=-979; IM=-894; II=-1115; DM=-4541; DD=-63;
/M: SY='H'; M=-2096,-2902,-2547,-1398,-3643,-2700, 3131,-3043, 2180,-2732,-2032,-1362,-2656, -251, 2687,-1973,-1818,-2789,-2602,-2434; M0=-1646;
/I:         MM=-13; MI=-7375; MD=-8417; IM=-894; II=-1115; DM=-32; DD=-5512;
/M: SY='D'; M=  833,-3697, 1502, 1236,-4018,  533, 1047,-3769,-1437,-3713,  536, 1045, 1001,-1396, -163,   59,-2163,-3319,-3881,-3197; M0=-1037;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='H'; M=-2636,-4106, -353,-1814,-4443, 1033, 3869,-4185, 1134,-4109,-3208, 1256,-3631,-1740,  979,   66,-2575,-3740,-4257,-3589; M0=-1755;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='Y'; M=-2272,-3233,-2379,-1826, -315, -855,  522, -710, 1464,-3173,  951, -273,-3430,-1662, 1222, -251, -379,-2759,-3529, 3271; M0=-1100;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='V'; M=-1045,-3648,-6732,-6343,-4197,-6406,-6002, 1416,-6211,  878,-2989,-6068,-6231,-6055,-6258,-5693, 1612, 2789,-5582,-5134; M0=-3439;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='R'; M=-2296,-3044,-2563,  264,  889,-3423,-2128, 1426,-1894, -460,-2198, 1085,-3506, 1231, 1557, -906,  911,-2541,-3380, 1014; M0=-898;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='I'; M=  830,-3432,-6287,-5773,-3472,-5741,-4864, 2116,-5499, 1943,-2418,-5393,-5633,-5150,-5380,-4920,-3750, 1605,-4522,  165; M0=-2943;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='H'; M=-2358,  697,-3106, -727,  669,-3627, 3189,  841, -624,-2572,-1872, -496,-3700,-2260, 1054, -741,  779,  212,-3091, 1752; M0=-1019;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='T'; M= -300,-2969, -508,-2165,-3058, -933, 1034,-2656,-2053,  533,-2149, -255,-3583,-1964,-2453, -692, 2979,  141,-3342,-2856; M0=-1074;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='K'; M=  178,-3689,  461, 1125, -496,  -89,  722,-1094, 1843,-3705,-2779, -134,-3285,-1390,  705,  -29,  246, -888,-3873,-3191; M0=-713;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='N'; M=-1410,-3694, 1569,  834,-4015,  470,  585,-3766, -216,-3710,-2783, 2104,-3287, -547, 1414,  278, -423,-3316,-3877,-3194; M0=-1180;
/I:         MM=-2536; MI=-10019; MD=-275; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='G'; M=-1963,-2645,-1735,-1716,-3931, 3120,-1850,-3748, 1942,-3670,-2973,-1788,-2900,-1546,-1219,-2003,-2127,-3188,-3479,-3280; M0=-1867;
/I:         MM=-12; MI=-7494; MD=-8537; IM=-894; II=-1115; DM=-32; DD=-5489;
/M: SY='H'; M=   10,-3691, -314, 1258, -371, 1380, 2011,-3763,  722,-3707,-2780,    4,-3285, 1640,  472,-2098, -407,-3313,-3874,-3191; M0=-1072;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='Q'; M= -739,-3689,  911,  990,-4010,-3192,  438, -780,  359,-3705,-2779,-1827,-3285, 1939, -247, 1246,  782,  300,-3873,-3191; M0=-990;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='Y'; M= -302, 1151, -779,-3997, 1564, -903,-2842,  428, -753, -178,-1508,-3567,-4032, -282,  340,-3057,-2392,  531, 1340, 2992; M0=-997;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='E'; M=-2277,-3173, -695, 1901, 1188,-3364,-2057, -654, -424, 1459,-2316, -102, -493,-1705,-2219,   13, -555, -351,-3482,-2939; M0=-755;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='C'; M=-2459, 2457,-4804, -969, 2293,-4006,  567, 1247,-3763,  396, 1833,-3652,-4056,-3386,-3563,-3091,  330, 1113,-2743,  270; M0=-1543;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='Y'; M= -749,-3686,  579, -259,-4005,-3192,  658,-3754,  375,    3,  387,  -52, 1584,-1392, 1048, -740,  785,-3307,-3871, 1784; M0=-797;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='M'; M=  -10,-3285, -512,  456,-3446, 2050,-2020,-3094,-1701,  948, 2473,-2063,-3422,  152,-2166, -667,-2216,-2819, 1287,-3003; M0=-1039;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='N'; M=-3007,-4254,-2966,-2390,-4839,-3875,-2480,-4504, -257,-4389,-3528, 2089, 1110,-2040, 1864, 1222, 2020,-4070,-4469,-3948; M0=-1973;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='L'; M=-5747,-5077,-8113,-7505, -143,-7989,-6512, 1435,-7325, 2882, 2195,-7734,-6810,-5920,-6716,-7425,-5557,-3403,-4872,-5153; M0=-4730;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='N'; M=  429,-3690, -358, -279,-4010, -930,-1850,-3761, 1043,-3706,-2779, 1881,-3285,-1391, -223, 1156,  969, -986,-3873, 1421; M0=-973;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='E'; M= 1155,-3691, 1533, 2033,-4012,-3191,-1850,-3762, -232,-3707,-2780,  -36,-3285,  805,  409, -871, -397, -986,-3874,  107; M0=-1136;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='L'; M=  -97,-2455,-4999,-4371,  879,-4218,-3100, 1274,-3974, 2168,-1605,-3864,-4255,-3593,-3776,-3308, -452, 1421,-2948,  116; M0=-1841;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='E'; M= -764, 1326, -421, 2745, -269,-3302,-1981, -710, -193, -542,-2461,-2015,-3390,   84,-2114,  -57,  266, -838,-3607,-3022; M0=-876;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='K'; M=  421,-3712,   -5, 1300,-4033, -926,-1867,-3784, 2482,-3728,-2802, 1104,-3301,  149,-1959,  287, -470,-3334,-3895,-3211; M0=-1286;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='K'; M=-2275,-3731, -309, 1204,-4055,-3245,-1891,-3798, 2501, -562,  391,-1882,-3336, 1718, 1330,-2157,-2212, -899,-3906,-3236; M0=-1324;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='L'; M=-2473, 1104,  256, -846,  997,-4015,-2880, -171,-3739, 2447,-1501,-3643,-4065,-3371,-3558,-3098, -414,-1717,-2758, 1706; M0=-1569;
/I:         MM=-585; MI=-4806; MD=-1749; IM=-157; II=-3278; DM=-701; DD=-1378;
/M: SY='P'; M= -286,-3293,  837,   55,-3613,  546, 1063,-3364,  832,-3308,-2382, 1016, 2298, -991,-1541,-1699, -105,-2914,-3476,  518; M0=-930;
/I:         MM=-340; MI=-9510; MD=-2263; IM=-894; II=-1115; DM=-2336; DD=-319;
/M: SY='P'; M=-1685,-3159,  974, -960,-3481, 1062,-1314,-3233, -904,-3178,-2255,  462, 2118,  680,  355,  675,  710,-2783,-3346,-2661; M0=-926;
/I:         MM=-3; MI=-9269; MD=-10311; IM=-894; II=-1115; DM=-190; DD=-3016;
/M: SY='P'; M=  377,-3564,  740,  337,  646,-3168,-1831,  100, -204,-3565,-2663,-1818, 1539,  856,-1927,  718,  766, -822,-3770,  158; M0=-677;
/I:         MM=-2; MI=-9964; MD=-11006; IM=-894; II=-1115; DM=-364; DD=-2166;
/M: SY='H'; M=  -24,-3690, -441,  282,-4011,  480, 1709,-3761,-1430,-3706,  226, 1148, -461,  590, 1460,   49,  340, -832,-3873,  789; M0=-730;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='F'; M=-5323,-4804,-7508,-7077, 3904,  480,-5125, -365,-6807, 1283,-1977,-6647,-6501,-5692,-6323,-6374,-5214,-3332,-4114,-3524; M0=-3923;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='F'; M=  -69,-2360,-4887,-4253, 2763,-4095,-2968, 1505,-3850, 1159,  812,-3741,-4138,-3469,-3650,-3181, -682,  952,-2824,  185; M0=-1760;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='R'; M= -861,-4879,-5131,-4010,-5987,-4869,-3196,-5389,-1859,-1290,-4453,-3859,-4996, 2299, 3647, -956,-4108,-5051,-5052,-4925; M0=-2963;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='C'; M=-3821, 4284,-6378,-5917,-3866,-5883,-5197, 2112,-5690, -960,-2780,-5551, -560,-5456,-5644,-5096,  190, 1962,-4921,-4510; M0=-3202;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='H'; M=-4385,-6130,  292,-2510,-6691, -716, 4894,-6696,-4217,-6551,-5973, -405,-4842,-3477,-5211, 1185,-4541,-6046,-6744,-5641; M0=-3678;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='R'; M=-4943,-5488,-6020,-4238,-6486,-5365,-3115,-5678, 1505,-5260,-4623, -308,-5258, -131, 3768,-4806, -703,-5487,-5053,-5036; M0=-3646;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='S'; M=-1014,-3766,-4436,-4513,-6094, -672,-4715,-5904,-4833,-6064,-5134, 1346,-4627,  -86,-5053, 3295, -487,-4788,-6220,-5905; M0=-3175;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='Y'; M= -436, 2360,-4722,  -89, 1883,-3995, 1467,-1788,-3704,  -87,  725,-3614,-4045,-3342, -501, -365,-2396, -381, 2247, 2715; M0=-1324;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='W'; M=-4388, 1471,-6875,-6356,-3293,-6421,-5471, 2413,-6113, 2271,-2133,-6086,-6092,-5514,-5902,-5645,-4323,  302, 2908,-4609; M0=-3682;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='V'; M=  -91,-3788,-7005,-6696,-4516,-6863,-6968, 2138,-6680,-1126,-3193,-6522,-6594,-6662,-6872,-6251,-4297, 3254,-6316,-5773; M0=-4124;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='N'; M=  965,-5411,  627,-2733,-6676,-4191,-3958,-6647,-4427,-6572,-5932, 3953, -379,-3676,-5353,-3940,-4362,-5830,-6755,-5777; M0=-3653;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='L'; M=-2553,-2873, -629,-2728,-2904,-3796,-2493, 1637,  208, 2050,-2051,-2811, -499,-2355, 1100,-2807,  817,-2328,-3252,-2842; M0=-1261;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='D'; M=  469,-3690, 1661,  691, -612,  -40, 1514, -807,  818,-3707,-2780,  963,-3284,  125, -336, -163, -467,-3312,-3874,  -92; M0=-735;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='H'; M=  -89, 1818, -399,-1525,-3997,-3197, 2371,-3743, 1628,-3694,-2771, 1722,-3290,-1397, 1124,   41,-2160,-3300, 1262, 1305; M0=-1312;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='I'; M=-1053,-3787,-6927,-6562, -242,-6695,-6397, 3210,-6474,  211,-2916,-6349,-6429,-6280,-6538,-6025,-4260, 2097,-5772,-5379; M0=-3769;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='R'; M=  -68,-3691, -589, 1684,-4011,-3195,-1853,-1013, 1453,-3706,-2780,-1831,-3288,  894, 2130, -736,-2160,  531,-3874,-3193; M0=-1192;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='E'; M=-2232,-3705, -403, 2158,-4027,  -66, 1486,-3777,  386,-1393,-2795,  -52,-3296,-1403, 1476, 1323,-2171,-3328,-3888,-3205; M0=-1184;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='I'; M=-1037,-3266,-6014,-5453, -454,-5382,-4379, 2900,-5131, 1416,-2164,-5030,-5308,-4738,-4966,-4526,-3523, 1639,-4074, -217; M0=-2757;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='D'; M= -735,-3680, 2091, 1377,-3997,-3194,-1853, -702,  828,-1469,  440,-1831, -961, 1443, 1307,-2101,-2158, -940,-3867,-3187; M0=-953;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='R'; M=-2219,-3679, -689, -210, 1818, -931,-1854,-3741,  864,  -37,-2769,-1832, 1171,   94, 1914, -644, -473,-3298,-3865,  608; M0=-783;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='W'; M=  289,-3691, 1602,  328,-4011, -902,-1855,-3760, 1834,-1326,-2781,-1831,-3289, 1269,-1943,-2103,  909,-3313, 3051,-3194; M0=-1172;
/I:         MM=-52; MI=-10019; MD=-4850; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='P'; M= -745,-3656,  971, 1142, 1421, 1204,-1818,-3725,  788,-1727,-2745,  -76, 1428,-1359,-1908,  -14,-2125,-3277,-3840,-3157; M0=-860;
/I:         MM=-447; MI=-9968; MD=-1915; IM=-894; II=-1115; DM=-1444; DD=-661;
/M: SY='N'; M= -314,-3313,  803,-1159,-3624,  275, 1971,-3367,-1091,  183,-2409, 2686,-2930,-1046,  826, -220,-1807,-2931,-3506,-2828; M0=-960;
/I:         MM=-303; MI=-9525; MD=-2410; IM=-894; II=-1115; DM=-3448; DD=-139;
/M: SY='G'; M=-1972,-2537,-2780,-2369,-3046, 2703,-2371, -329,-2303,-2927,-2186, 1710,-3361,-2172,-2639,  730,  337,-2394,-3361,  761; M0=-1376;
/I:         MM=-301; MI=-2414; MD=-10267; IM=-58; II=-4667; DM=-174; DD=-3141;
/M: SY='R'; M=-1008, 1042, -257, -236,-3960,-3151, 1088, -768, 1447,  -24,  477, -133,-3244,  237, 2041, -629,  643,-3262,-3827,-3146; M0=-810;
/I:         MM=-2; MI=-9968; MD=-11010; IM=-894; II=-1115; DM=-377; DD=-2121;
/M: SY='Y'; M= 1061, 1084,-4798,  758, 2123,-4005,-2876,  921,-3759,  244,-1488,-3649,-4055,-3383,-3561,-1093,-2399, -444, 1356, 2171; M0=-1387;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='E'; M=-2235,-3519,-2162, 1626,-3767,-3240,  588,  461, -152,  848,  421, -233,-3331,  443, 1287, -148, -514, -815,-3748,  120; M0=-723;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='L'; M=  -25,-2286,-4803,-4167,  844,-1422,-2878,  429,-3763, 2111,  622,-3652,-4057,  -77,-3563,-3091, -730, 1104,-2743,  961; M0=-1422;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='F'; M=-2399,-2511, -644,-3010, 2116,-3771, 1533, 1735, -616,  186, 1334,-2980,-3836, -545,  711, -703, -418,-1944,-2938, 1222; M0=-983;
/I:         MM=-52; MI=-10019; MD=-4850; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='L'; M=-2378,-2376,   21,-3313,    0,  -83,-2634, -529,  277, 2182,  623,-3161, -468,-2829,-3143,  363, -480,-1801,-2815,  212; M0=-878;
/I:         MM=-372; MI=-9968; MD=-2144; IM=-894; II=-1115; DM=-1444; DD=-661;
/M: SY='K'; M=-1878,-3350,  774,   99,  -24,-2852,-1511,-3420, 2441,-3366,-2439,  212, -217,-1051, 1101,  449, -164, -602,-3533,-2851; M0=-943;
/I:         MM=-1921; MI=-9599; MD=-445; IM=-894; II=-1115; DM=-3279; DD=-157;
/M: SY='K'; M= -718,-1998,  941,  -61,  856, 1136, -391,-1967, 1463,-2003,-1134, -358,-1798,   36, -513, -635, 1157,-1597,-2246,-1606; M0=-471;
/I:         MM=-329; MI=-7689; MD=-2328; IM=-894; II=-1115; DM=-3007; DD=-192;
/M: SY='L'; M=  795,-1202,-2697,  962,-1084,-2702,-1574, 1452,-1943, 1868, -202,-2048,-2746,-1716,-2031,-1776,-1186, -209,-1723,-1376; M0=-847;
/I:         MM=-9; MI=-7926; MD=-8969; IM=-894; II=-1115; DM=-108; DD=-3798;
/M: SY='N'; M=-2178,-3651, 1874,  384,-3971, 1025,-1810,-3722, -120,-1722,-2740, 2294,-3244,  171,-1899, -101,  369, -851,-3834,-3151; M0=-1019;
/I:         MM=-77; MI=-9961; MD=-4292; IM=-894; II=-1115; DM=-353; DD=-2203;
/M: SY='G'; M= -761,-3632,  679,  653,-3953, 1988,  692,-3703,  488,-3648,-2721, 1149, -498,  277,  521, -640,-2097, -675,-3815,-3132; M0=-933;
/I:         MM=-2; MI=-9947; MD=-10989; IM=-894; II=-1115; DM=-316; DD=-2347;
/M: SY='H'; M=-1245,-3678,  306,  772,  333,  -19, 1462, -210, -122,  283,-2769,  -53, -546,  186, -302,  -50,   80, -929,-3865,  986; M0=-218;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='T'; M=  936,-3666,-2078,  621, -485,-3198,  666,-3718, 1394,-3677,-2758,-1838,  374,-1401,  334,  825, 1486,-1274,-3856,  -90; M0=-918;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='C'; M=  293, 3084,-4812,-4176,-2250,-4018,-2890,  854,-3773, 1003,  666,-3663, -403,-3397,   96,-3103,  213, 1816,-2756,-2414; M0=-1465;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='P'; M= -630,-3479,-2188,-1638,-3711, -857,-1923, -723, 1130,-1273,-2593, -326, 2901,  632,-2035, -897, -118,-3053,-3718, 1436; M0=-956;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='V'; M= -144, 1048,-4809,-4173,  542, -916,-2883, 1309,-3768, -204,-1492,-3657,-4061,-3391,-3569, -170,-2404, 2716,-2749,  288; M0=-1505;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='S'; M=  554, 1242,-6435,-6777,-6361, -874,-5705,-6185,-6387,-6448,-5470,-4765,-4735,-5809,-5978, 3339,  295,-4851,-6584,-6576; M0=-3962;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='R'; M=-2601,-2535,-4392,-3725, -382,-4050,-2811, -693,  784,-1095,-1723,-3460, -465,-3045, 3566,-3123,-2533, -444,-2947, -126; M0=-1759;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='R'; M=  664,-3687,-2069, -255,-4005,  301,  632,-3754, -120,-1368,-2776,-1830,-3287,  144, 2559, 1050, -549,-3307,-3871,   67; M0=-1007;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='Y'; M=-2470,-3887,-2342, -279, -413,-3422, 1060,-3954, 1958,-3883,-2980,  451,-3506,-1570, 1903, -771,-2397,-3525,-4019, 3052; M0=-1658;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='M'; M=  741,-2292,-4745,-4113,-2247,-3998,-2867, -283,-3720, 1331, 1515,-3625,-4049, -240, 1176,  173,-2398, 1419,-2749, 1161; M0=-1344;
/I:         MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='K'; M= 1442,-4295,-2954,-2300, -807,-3887,-2344,-4382, 2683,-4256,-3399, -423,  982, -131, 1640,-2877,-2888,-3988,-4330,-3817; M0=-1889;
/I:         MM=-2; MI=-9983; MD=-11025; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='E'; M=  817,-3661, -366, 1933,-3982, -496,-1821,-3733, 1485,-3677,-2750, -104,-3255,  785,-1909,  559, -515, -841, 1256,-3162; M0=-1030;
/I:         MM=-2; MI=-9983; MD=-11025; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='L'; M=-4963,-4399,-7511,-7050,  561,-7341,-6486, 1882,-6931, 2360,-2091,-7028,-6639,-6052,-6650,-6722,-4882, 1851,-5158,-5227; M0=-4161;
/I:         MM=-2; MI=-9930; MD=-10972; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='K'; M= -879,-4989,-4337,-3338,-5716,-4716,-2789,-5143, 3049,-4850,-4116,  371,-4696,   25, 2527, -827,-3811,-4848,-4751,-4528; M0=-2757;
/I:         MM=-2; MI=-9930; MD=-10972; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='Q'; M=  462,-3628, -275, 2026,-3950,-3127,-1786,-3700, 1450,-1316,-2718,-1763,-3221, 2268,  706, -539,-2095,-3251,-3810,-3128; M0=-1271;
/I:         MM=-2; MI=-9885; MD=-10927; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='A'; M= 1632,-3099,-2296,-1742,-3240,-3247,  893,  167,  947,  965, -360,-1999,-3333,  913,  993, -645, -283,-2622,-3401,-2850; M0=-883;
/I:         MM=-2; MI=-9885; MD=-10927; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='L'; M= -623,-2184,-4701,-4065,  745,  572,-2777, 1401,-3661, 2088, 1724,-3551,-3954,-3283,-3461, -641,-2298,-1594, 1596,-2299; M0=-1487;
/I:         MM=-2; MI=-9885; MD=-10927; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='W'; M=  529,-3580, -188,  407,-3901,  973, 1959,-3652,  490,-1166,-2669,  777,-3174,  587, -406,  558, -362,-3202, 2262,-3081; M0=-784;
/I:         MM=-2; MI=-9822; MD=-10864; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='K'; M= -597,-3446,  426, -107, -271,-3052,  856,  752, 1343,  750,  639, -526,-3144,  515,  -78, -516,   38, -715,-3651,-2992; M0=-466;
/I:         B0=*; E1=-1000;
» More

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_10 which contains 546'790 sequence entries.


Total number of hits 63 in 63 different sequences
Number of true positive hits 63 in 63 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] window20
Author [info] PS_Langendijk_Genevaux
Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Feature key [info] DOMAIN
Feature description [info] HTH LytTR-type
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
63 sequences

AGRA_STAAC  (Q5HEG2), AGRA_STAAM  (Q931H9), AGRA_STAAN  (P0A0I5), 
AGRA_STAAR  (Q6GF33), AGRA_STAAS  (Q6G7R8), AGRA_STAAU  (P0A0I7), 
AGRA_STAAW  (P0A0I6), AGRA_STAEQ  (Q5HMY2), AGRA_STAES  (Q8CNM5), 
ALGR_PSEAE  (P26275), LYTR_STAA3  (Q2FK09), LYTR_STAA8  (P60611), 
LYTR_STAAB  (Q2YV67), LYTR_STAAC  (Q5HJB5), LYTR_STAAM  (P60609), 
LYTR_STAAN  (P60610), LYTR_STAAR  (Q6GK51), LYTR_STAAS  (Q6GCL1), 
LYTR_STAAW  (Q8NYH3), LYTR_STAEQ  (Q5HLG2), LYTR_STAES  (Q8CN55), 
LYTR_STAHJ  (Q4L8V4), LYTR_STAS1  (Q4A010), LYTR_STRA3  (Q8E7H3), 
LYTR_STRA5  (Q8E217), LYTR_STRMU  (Q8DVB7), LYTT_BACAN  (Q81JL3), 
LYTT_BACCR  (Q814J1), LYTT_BACSU  (P94514), LYTT_ENTFA  (Q82Z76), 
LYTT_OCEIH  (Q8EQQ3), MRKE_KLEPN  (P21649), NATR_BACSU  (P70955), 
RCOM1_BURXL (Q13YL3), RCOM2_BURXL (Q13IY4), RCOM_RHORT  (Q2RNI6), 
Y0G0_VIBCH  (Q9KL96), Y2153_STAAN (Q7A3W9), Y2242_STAAB (Q2YZ22), 
Y2254_STAAS (Q6G6V7), Y2284_STAAW (Q8NV45), Y2310_STAA3 (Q2FED3), 
Y2360_STAAC (Q5HDJ2), Y2363_STAAM (Q99RR4), Y2449_STAAR (Q6GE71), 
Y2645_STAA8 (Q2FVQ7), Y2823_SHEON (Q8EDD7), Y3287_YERPE (Q8ZBV2), 
Y4021_VIBPA (Q87K77), Y503_VIBVU  (Q8DET1), Y538_VIBPA  (Q87S86), 
Y693_VIBCH  (Q9KU36), Y8J3_VIBVU  (Q8D4U6), YEHT_ECO57  (P0AFT7), 
YEHT_ECOL6  (P0AFT6), YEHT_ECOLI  (P0AFT5), YEHT_SALTI  (Q8Z5C1), 
YEHT_SALTY  (Q8ZNN2), YEHT_SHIFL  (P59640), YPDB_ECO57  (P0AE40), 
YPDB_ECOL6  (Q8FFE0), YPDB_ECOLI  (P0AE39), YPDB_SHIFL  (P0AE41)
» More

PDB
[Detailed view]
2 PDB

3BS1; 4G4K

View entry in original PROSITE format
View entry in raw text format (no links)
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