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Entry: PS50937

Forthcoming changes to the profile format
General information about the entry

Entry name [info] HTH_MERR_2
Accession [info] PS50937
Entry type [info] MATRIX
Date [info] OCT-2003 (CREATED); OCT-2013 (DATA UPDATE); JUN-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00477
Associated ProRule [info] PRU00254

Name and characterization of the entry

Description [info] MerR-type HTH domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=71;
/DISJOINT: DEFINITION=PROTECT; N1=1; N2=71;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.6280272; R2=0.0003213; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=293977.13441; R2=15.41595; TEXT='HScore';
/CUT_OFF: LEVEL=0; SCORE=19832; N_SCORE=9.0; H_SCORE=599706; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=12051; N_SCORE=6.5; H_SCORE=479755; MODE=1; TEXT='?';
/DEFAULT: B1=*; E1=*; MM=*; II=*;
...
                A     C     D     E     F     G     H     I     K     L     M     N     P     Q     R     S     T     V     W     Y
/I:         B1=-8455; E0=*; BM=-54; BD=-4755;
/M: SY='M'; M=  237,-3209,-2153, -487,-3393,-1064,  760,-3053,  242,  931, 2005,  750,-3256,-1450, -323, -811,  923,  118,-3482, 1153; M0=-608;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='Y'; M=-4443,-4043,-6189,-5925, 1577,-5678,  724,  349,-5514, 1552,  445,-4875,-5624,-4769,-5156,-4822,-4362,-3552, 1489, 3661; M0=-3218;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='T'; M=-2467,-3782,-2405,-1816,-4147,-3416,-2007,-3838, -292,-3791,-2913,-2084, -275,  795, 1433, 1055, 2893, -640,-3946,-3357; M0=-1559;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='I'; M=-3893,-3457,-6508,-6105,-3994,-6123,-5669, 3340,-5949,-2978, 1503,-5801, -695,-5777,-5974,-5393,  398, 1748,-5297,-4855; M0=-3510;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='G'; M= -875,-4398,-3408,-2762,-5169, 2891,-2625,-4756, 1224,-4584,-3773,-2901,-4233, -426,  115, 1326,-3236,-4340,-4593,-4199; M0=-2201;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='E'; M=-2346,-3741,-2234, 2583,-4083,-3301,-1898, -521, 1426,-3735,-2837,-1943,-3383, 1186, 1192,-2232, -218,  227,-3885,-3261; M0=-1449;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='V'; M= 1026,-3396,-6128,-5544,  998,-5498,-4430,   41,-5215, 1753,  641,-5154,-5340,-4697,-4995,-4645,-3649, 2350,-3972,-3767; M0=-2725;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='A'; M= 3344,-3829,-4678,-4026,-5219,-4067,-3510,-4798, -617,-4861,  833,-3740,-4527,-3191, -758,  229,-3403,-4272,-5016,-4769; M0=-2864;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='K'; M=-2093,-3564,  469, 1570,-3884, -188,-1724,-3634, 2141, -324,-2653,-1702,-3159,  341, 1359,-1973, -409, -757,-3746,-3065; M0=-988;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='M'; M=  487,-2378, -389,-2872, -308, -839,-2429,   60, 1124, 1573, 2282,-2844,-3701,-2485, 1213,-2656,-2205,-1812,-2805,-2417; M0=-957;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='C'; M= 1637, 2893,-4596,-3974,-2161, -847,-2762, -220,-3591,   11,-1408,-3493,-3923,-3232,-3426,  810, 1866,-1617,-2662,  706; M0=-1397;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='G'; M= -796,-4247,  950, -315,-4548, 3001,-2266,-4323,-1966,-4256,-3363,   44,-3643,  276, -205, -157,-2666,-3863,-4427,-3693; M0=-1741;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='V'; M=-4065, 1057,-6730,-6381,-4220,-6504,-6316, 1973,-6306,  425,-2952,-6158,-6278,-6216,-6422,-5838, -332, 3085,-5800,-5308; M0=-3751;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='S'; M=  346,-3573,-1968,-1420,-3899,-3087,  873,-3646,  -57,-3593,-2671, 1830, -487,-1289,  -13, 2072, 1512,-3200,-3762,-3086; M0=-1302;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='P'; M=  554,-3169,-2196, -150,-3339,-3189,-1871,  182,  812,-3119,-2301,-1914, 2037,-1486,  132, -627, -412, 1869,-3452,-2877; M0=-943;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='R'; M=  267,-3557,  446,  768,-3876,-3062,  871, -980,  -54,-3572,-2646,-1697,-3155, 1513, 1968,  421,-2026,   87,-3741,  986; M0=-937;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='T'; M= 1095,-2291,-4613,-4003,  235,-3931,-2854,  -93,-3631,-2067,  836,-3558,-4006,   33,-3493,-3023, 3294,-1674,-2768,-2424; M0=-1960;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='L'; M=-4788,-4220,-7371,-6944,-3329,-7237,-6544, 1768,-6855, 2826,-2071,-6927,-6561,-6048,-6630,-6643,-4720,  922,-5190,-5244; M0=-4278;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='R'; M=-6012,-5215,-6704,-6660,  396,-6507, 3047, -103,-5409,-4559,-4535,-5208,-6388,-5097, 3631,-5749,-5861,-5194,-2254,  701; M0=-4206;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='H'; M=  742,-4054, -208,-2493, 2513,-4020, 3085,-3899,-2615,-3883,-3232,  281,-4169,  175,-3073,-3092,-3107,-3665,-2998, 2893; M0=-2033;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='Y'; M=-6516,-5435,-6895,-7249,-1494,-6770,-2971,-5362,-6797, -962,-4757,-5394,-6627,-5529,-6163,-6032,-6367,-5542, 3456, 4623; M0=-4996;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='E'; M=-3866,-5695, 2248, 2985,-5892, -536,  797,-5777,-3310,-1168,-4922,-2531,-4419, 1036,-4080,-3562,-3905,-5268,-5847,-4898; M0=-2649;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='R'; M=  -61,-3560, -486, 1027,-3882,-3061,  630,-3632, 1878,-1152,-2650, -255,-3154,  205, 2169, -701,  276,-3182,-3744,-3061; M0=-1080;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='I'; M= -471,-3426,-2023, 1295,-3687,-3109,  885, 1857, 1023,   94,-2532,-1771,-3200,  171, 1273,-2022, -455,-3016,-3646,  197; M0=-920;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='G'; M=-2881,-4440,  -78, -509,-4733, 3200,  693,-4513,-2127,-4440,-3562,   91,-3775,   68,  -92,-2706,-2847,-4052,-4609,  392; M0=-2024;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='L'; M=-5091,-4614,-7524,-6979,-2884, -675,-5960,-2291,-6730, 3179,  815,-6866,-6357,-5607,-6253,-6314,-4998, -572,-4649,-4822; M0=-3981;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='I'; M=-5122,-4547,-7564,-7011, 1612,-7323,-6129, 2338,-6823, 2132,  803,-7029,-6485,-5718,-6384,-6670,-4993,  956,-4753,-4923; M0=-4055;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='P'; M=  -98,-3560, -249,  386,-3880,-3061,  645,-3631,  968,-2293,-2649, -255, 2010,-1260,  222, 1000, 1063,-1066,-3743,-3060; M0=-870;
/I:         MM=-554; MI=-9860; MD=-1654; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='P'; M= -349,-3453,-1534,  834,-3782, -592, 2067,-3533,-1179,-3475,-2571,  385, 3129,-1131,  408,-1848,-1931,-3086,-3643,-2954; M0=-1359;
/I:         MM=-92; MI=-4038; MD=-10351; IM=-152; II=-3325; DM=-87; DD=-4101;
/M: SY='P'; M= -712,-3143,-2409,  370,-3349,-3311,-2079,-2982,-1784,-3150,-2360,-2130, 3059,-1730, -423, 1275,-2217,  739,-3519,  265; M0=-1308;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='Q'; M=  439,-3497,  621,  669,-3789,  -19,-1739,  368, -153, -197,-2593,-1724, -697, 1750,-1834, -606, -237, 1013,-3697,-3032; M0=-485;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='R'; M=-2879, 1179, -318,-2382,-4141, -945,-2330,-3734,  645,-1505,-3000,-2569,-3899,-1937, 3646,-2851,-2783, -912,-4004,-3549; M0=-1825;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='T'; M=-2316,-3810, -246, -301,-4126, -980,-1926,-3884,  523,-3825,-2909, 1428,  585,-1475,-2067, 1312, 2550,-3431,-3994,-3295; M0=-1378;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='E'; M= 1081,-3560, 1309, 2098,-3881,-3061,  459,-3632,  -15,-3576,-2649,  -50,  -17,  241, -219, -701, -251,-3182,-3744,  230; M0=-1057;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='G'; M=  334,-3549,-2035,-1492,-3896, 2725,-1810,-3631,  291,-3600,-2689,  696,-3230,-1358, -641,  526, -290,-3198,-3784,   81; M0=-1288;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='G'; M=-3794,-4723,-3288,-3177,-5983, 3046,-3237,-5553, -385,-5342,-4611, 2263,-4663,-2853,  -42,  210,-3848,-5031,-5298,-4966; M0=-2803;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='Y'; M=-2233,-2753,-2726,-2165,  709, -717, 2538,  183,-2007,-2646,-1922, -191,-3504,  628,  978,-2395, -457,-2226,-3090, 3426; M0=-1241;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='R'; M=-6269,-6042,-6941,-6801,-7665, -643,-6014,-8097,-5256,-7678,-7255,-6525,-6519,-6008, 4203,-6493,-6480,-7510,-6544,-7309; M0=-5819;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='R'; M=-3001,-2787,-5345,-4713,    0,-4588,-3433, -417,-4322, 1677, 1502,-4235,-4556,-3863, 2596,-3686,-2933,  462,-3157, 1736; M0=-2162;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='Y'; M=-6538,-5449,-6898,-7260, 2302,-6767,-2978,-5430,-6822,-4730,-4829,-5402,-6633,-5544,-6182,-6042,-6391,-5588,-2224, 4610; M0=-5282;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='S'; M=-2125,-3600,  955,-1411,-3921,   67,-1753,-3672,  321,-3615,-2690,  743,-3186,  234,  258, 2132, 1547,-3222,-3782,-3098; M0=-1262;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='R'; M= -544,-3580, 2061, 1679, -120,-3078,-1738,-3651,  177,-3595,-2670,-1714,-3173,  861, 2099,-1989,-2049,-3203,-3762,  210; M0=-1340;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='E'; M= 1037,-3560,  360, 1920,-3881,-3061,  833,-3632,  511,-3576,-2649,  103,-3154, 1306,  -76,  162, -389,-1825,-3743,  345; M0=-1033;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='D'; M=  537,-3664, 2999,  -75,-3979,-3130,  700,-3730,-1417,-3678,-2759,-1766,-3243, 1581,-1930, -665,  616, -980,-3851,-3164; M0=-1437;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='I'; M=-1207,-3724,-6771,-6334,   25,-6439,-5788, 2114,-6171, 2040,-2357,-6098,-6133,-5750,-6087,-5718,-4153, 2091,-5082,-4858; M0=-3452;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='Q'; M= -639,-3535, 1546, 1828,-3844,-3070,-1730, -595,-1315,-1441,-2628,-1710,-3163, 2307, 1624,-1978, -653,-1812,-3726,-3051; M0=-1125;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='R'; M= -498,-2249,-4017,-3415,  -25,-3767,  781,  617,  577, -696,-1447,-3187,-3824,-2866, 3130,-2821, -292,-1671, 1408,   73; M0=-1372;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='L'; M= -704,-3809,-6628,-6059,   89,-6093,-5018,  606,-5768, 2481,  798,-5758,-5777,-5111,-5505,-5280,-4120, 1915,-4317,-4221; M0=-3153;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='Q'; M=   93, 1074, -181,-1413,-3812,-3076, 1411,-3546,  112,  311,-2608,-1720,-3168, 2203, 1914,  569,-2032,-1048,-3709,-3040; M0=-971;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='F'; M=-2287,-2342,-3633,  303, 2956, -439,-2492, -418,-2803, -116,-1532,-2962,-3751, 1893, 1171,-2721,-2227,  275,-2774,-2396; M0=-1189;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='I'; M= -699,-3639,-6788,-6428,-4053,-6566,-6304, 3341,-6347, -197, 1167,-6220,-6298,-6168,-6422,-5901,-4116, 1794,-5674,-5273; M0=-3771;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='K'; M= -525,-3702,-2226,-1649,-4030,-3289,-1892, -643, 2452, -155,-2800,  315,-3371, 1005, 2210, -540,-2254,-3330,-3855,-3234; M0=-1263;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='H'; M=  565,  912, -182, -132,  956,-3178, 2108, -780,-1527,-1082,-2309,-1898,-3266, 1203, 1364,  663, -411,  -58,-3458,-2878; M0=-625;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='M'; M= 1803, 1046,-4674,-4038,  777,-3876,  479,  158,-3633, 1660, 2095,-3522,-3926,-3255,-3433,-2961,-2270,-1568, 1542,    1; M0=-1663;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='Q'; M=-2337,-2806,-2905,-2318,   19,-3534,-2223,  525, 2141, -884,-1977,-2463,-3604, 2187, 1945, -581,-2270, -331,-3167,-2725; M0=-1209;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='E'; M=  -62,-3577, 1490, 1968,-3897,-3071,  684,-3648,-1315,-3592,-2666,  -51,-3166, 1880, 1458, -591,-2042,-3198,-3760,  209; M0=-1318;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='L'; M= -556,  996, -401, -462,-2323,-3666,-2469,  838,-2772, 1956,  675, -181,-3729, 1506,-2923,-2693,  377, -561,-2773,-2392; M0=-997;
/I:         MM=-2559; MI=-9860; MD=-270; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='E'; M=-3020,-3587,-1226, 3796,-4314,-2753,-2403,-4538,-2542,-4406,-3979,-1883,-3264,-2228,-2966,-2859,-3140,-4142,-3836,-3748; M0=-2763;
/I:         MM=-14; MI=-7314; MD=-8356; IM=-894; II=-1115; DM=-36; DD=-5344;
/M: SY='G'; M=-4534,-6364,  546, -566,-6748, 3637,-3781,-6803,-4264,-6618,-6097,-2894,-4860,-3492,-5295,-4160,-4668,-6196,-6696,-5674; M0=-3996;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='F'; M=-2788,-2585,-5139,-4507, 2943,-4368,-3235, 1349,-4114,  155, 2534,-4017,-4368,-3690,-3901,-3463,  985,  464, 1958,-2715; M0=-2129;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='S'; M= -474,-3574,-2090,-1561,-4020, -677,-1892,-3768,-1479,-3724,-2801,  876, 2066, 1632, -453, 2167, -579,-3299,-3895,-3224; M0=-1337;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='L'; M=-5117,-4569,-7509,-6919,-2861,-7187,-5895,  -52,-6689, 2991, 1022,-6889,-6391,-5579,-6227,-6490,-4977,  448,-4606,  685; M0=-4071;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='E'; M=  861,-3662,  867, 1857,-3981, -686,-1803,-3735, 1219,-3677,-2754, -228,-3230,  854,-1912, 1307,-2122,-3283,-3845,-3156; M0=-1258;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='E'; M=  233,-3585, 1822, 2435,-3904,  174,  771,-3655,  -77,-3600,-2675,-1713,-3176,-1285,-1837, -606, -525, -373,-3769,-3085; M0=-1161;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='I'; M=  224,-3627,-6769,-6405,-4046,-6534,-6251, 3559,-6317, -835,  813,-6190,-6276,-6137,-6387,-5864,-4101,  998,-5643,-5240; M0=-3790;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='K'; M= 1122, 1172, -453,-1387,-3878, -134, 1366, -485, 2047,-3574,-2648,  -51,-3155,  847, 1365,-1023,-2027,-3180,-3742,-3060; M0=-1042;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='R'; M=  813, 1026,  119, 1839,-3874,-3063,-1721,-3623,  467,-1512,  623,-1699,-3156, 1042, 1967,-1969, -396,-3176,-3740,-3059; M0=-1117;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='L'; M= 1345,-2696,-5256,-4625,  846,-4495,-3360, 1615,-4234, 2048,  563,-4144,-4478,   88,-4017,-3592,-2840, -235,-3115,-2830; M0=-1998;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='L'; M= -740, 1237,-4849,-4215, 1281,-4062,-2934, 1175,-3815, 2318,  717,-3708,-4095,  -37,-3611,-3150,-2440,  489,-2772,-2443; M0=-1782;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='D'; M= -715,-3559, 1476,  480,-3880, 1227,  745, -468, 1054,-1136,-2649,-1696,-3154,   22,  680,  604, -408,-3181,-3743,-3060; M0=-725;
/I:         MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='L'; M= -558, 1036,  754,-3367,-2219,   14,  368,   94,-3093, 1295,  933, -207,-3810, -272,-3126, -737,  395, 1012,-2695,  225; M0=-674;
/I:         B0=*; E1=-1000;
» More

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_07 which contains 546'000 sequence entries.


Total number of hits 79 in 79 different sequences
Number of true positive hits 79 in 79 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] window20
Author [info] PS_Langendijk_Genevaux
Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Feature key [info] DOMAIN
Feature description [info] HTH merR-type
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
79 sequences

ADHR_BACSU  (O06008), BLTR_BACSU  (P39842), BMRR_BACSU  (P39075), 
CARA_MYXXA  (Q50899), CARH_MYXXA  (Q50900), CARH_THET8  (Q53W62), 
CUER_BACSU  (O07586), CUER_ECO57  (Q8XD09), CUER_ECOL6  (Q8FK74), 
CUER_ECOLI  (P0A9G4), CUER_SALTI  (Q8Z8S3), CUER_SALTY  (Q93CH6), 
CUER_SHIFL  (P0A9G5), CUER_VIBC3  (A5F2W6), CUER_VIBCH  (P0C6D2), 
CUER_YERPE  (Q8ZCA8), GLNR_BACAN  (P62172), GLNR_BACCE  (P62173), 
GLNR_BACCR  (P62174), GLNR_BACSU  (P37582), HMMR_RHILV  (Q9X5V4), 
HMRR1_RHIME (P58378), HMRR2_RHIME (P58379), HMRR_SINMW  (Q9X5X4), 
HSPR_STRCO  (P40183), MERD_ACICA  (Q52110), MERD_ENTAG  (P0A2Q7), 
MERD_PSEAI  (P06689), MERD_PSEFL  (Q51773), MERD_SALTI  (P0A2Q6), 
MERD_SERMA  (P08654), MERD_SHIFL  (P20102), MERR_ACIFR  (P22896), 
MERR_BACCE  (P22853), MERR_PSEAI  (P0A183), MERR_PSEFL  (P0A184), 
MERR_PSESP  (P69413), MERR_SALTI  (P0A2Q8), MERR_SERMA  (P13111), 
MERR_SHIFL  (P0A2Q9), MERR_STAAU  (P22874), MLRA_ECOLI  (P33358), 
MLRA_SALTS  (E1WH94), MLRA_SALTY  (P0CL12), MTA_BACSU   (P71039), 
NOLA_BRADU  (P22537), NOLA_BRAEL  (P50329), NOLA_BRASN  (P50330), 
SKGA_CAUCN  (B8H172), SKGA_CAUCR  (P0CAV4), SOXR_CHRVO  (Q9ZHI4), 
SOXR_ECO57  (P0ACS3), SOXR_ECOLI  (P0ACS2), SOXR_PSEAE  (Q51506), 
SOXR_SALTI  (P0A2R1), SOXR_SALTY  (P0A2R0), SOXR_SHIFL  (P0ACS4), 
TIPA_STRCO  (P0A4T8), TIPA_STRLI  (P0A4T9), TNRA_BACSU  (Q45666), 
Y1828_MYCTO (P9WME6), Y1828_MYCTU (P9WME7), Y1830_MYCTO (P9WME4), 
Y1830_MYCTU (P9WME5), Y1859_MYCBO (P67670), Y1861_MYCBO (P67672), 
Y186_HAEIN  (P44558), Y293_HAEIN  (P44617), Y4778_PSEAE (Q9HV30), 
Y603_AQUAE  (O66861), Y701_SYNY3  (Q55963), YCGE_ECOLI  (P75989), 
YDFL_BACSU  (P96690), YFMP_BACSU  (O06474), YHI4_RHOCA  (P30791), 
YYAN_BACSU  (P37510), ZNTR_ECO57  (P0ACS6), ZNTR_ECOLI  (P0ACS5), 
ZNTR_HAEIN  (P45277)
» More

PDB
[Detailed view]
25 PDB

1EXI; 1EXJ; 1JBG; 1Q05; 1Q06; 1Q07; 1Q08; 1Q09; 1Q0A; 1R8D; 1R8E; 2VZ4; 2ZHG; 2ZHH; 3D6Y; 3D6Z; 3D70; 3D71; 3IAO; 3Q1M; 3Q2Y; 3Q3D; 3Q5P; 3Q5R; 3Q5S
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