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PROSITE entry PS50943


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General information about the entry

Entry name [info] HTH_CROC1
Accession [info] PS50943
Entry type [info] MATRIX
Date [info] 01-NOV-2003 CREATED;
07-APR-2021 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC50943
Associated ProRule [info] PRU00257

Name and characterization of the entry

Description [info] Cro/C1-type HTH domain profile.
Matrix / Profile [info] 
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=64;
/DISJOINT: DEFINITION=PROTECT; N1=1; N2=64;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=7.7448611; R2=0.0001141; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=314460.8437500; R2=0.5538543; PRIORITY=1; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=13630; H_SCORE=322010; N_SCORE=9.3; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=-10910; H_SCORE=308418; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: B0=*; B1=*; E0=*; E1=*; MM=*; II=*;

...
 
                A      C      D      E      F      G      H      I      K      L      M      N      P      Q      R      S      T      V      W      Y
/I:         B0=-8455; B1=-8455; BM=-5; BD=-8174;
/M: SY='I';  M= -4262, -7739,-10853,-10384, -2328,-10693, -9813,  2732, -4076,  2374,   302,-10387, -9950, -9339, -9958,-10083, -8224,   502, -8436, -8545; M0=-5986;
/I:         MM=0; MI=-13337; MD=-14379; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='K';  M=  -720, -6772, -3405,  -716, -7090, -6281, -2493,  -710,  2841, -2076, -5862, -2350, -6374,   191,  2600, -1956, -3638, -1792, -1789, -1556; M0=-2192;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='E';  M=   673, -6777,  -109,  1829, -1624, -3204,  -688, -1165,   973, -1146, -1738,   411, -6372,  1187,   632,  -220,  -829, -1638, -6960,   110; M0=-881;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='L';  M=  1176, -1327, -2909,  -813,  -749, -4167, -2445,   869, -1084,  2046,   377, -6682, -7171,  -934,  -607, -1892, -2844,  -824,   157,  1064; M0=-1367;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='R';  M= -3759, -1064, -7976, -3851, -2179, -7198, -6041, -2587, -1889, -1886,  -661, -6815, -7245, -3080,  4104, -6287, -5603, -3444, -5951, -1956; M0=-3854;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='K';  M=  -854, -2366,  -813,  1462, -7097, -3181, -1601, -1238,  2513,  -121,  -174,   575, -6372,   862,  -858, -2244,  -606,  -547, -6960, -6278; M0=-1354;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='K';  M=   870, -6778,  -559,  1520, -3417, -2255,   -38, -2072,  1579,  -649,  -408,  -215, -3621,  1157,   749,   416, -3481, -2595, -6961, -2215; M0=-973;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='K';  M=   467,  -640, -3502, -1452, -1589, -6284,  1290, -3870,  2067,   418,  -142,   706, -2034,   395,  2043, -2143, -2762, -3794, -6950, -1624; M0=-1429;
/I:         MM=-30; MI=-5617; MD=-14385; IM=-693; II=-1390; DM=-701; DD=-1378;
/M: SY='G';  M= -2586, -6780,   -48, -2588, -7101,  2912, -1058, -2915,  1381, -6796, -5869,  1610, -6374,  -873,  -739, -1278, -2814, -6402, -6963, -2060; M0=-2588;
/I:         MM=-6; MI=-13343; MD=-7995; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='M';  M= -5605, -2017, -3858, -7315,  -510, -3947, -6024,  1254, -1037,  2504,  2519, -6799, -7202, -6532, -2623, -6237, -5546, -1282,  2141,   144; M0=-3130;
/I:         MM=0; MI=-13337; MD=-14379; IM=-894; II=-1115; DM=-1520; DD=-618;
/M: SY='T';  M= -5847, -7349, -3509, -3338, -7669, -4112, -5412, -7427,  -951, -4645, -6456,  -650, -2184, -2971, -2721,  2230,  3280, -6974, -7517, -6818; M0=-3562;
/I:         MM=0; MI=-13337; MD=-14379; IM=-894; II=-1115; DM=-355; DD=-2197;
/M: SY='Q';  M= -2580, -5582, -7970, -7272, -5543, -7244, -6053,  -168, -1680,   756,   443, -6816, -2700,  4024,  -629, -3217, -5668, -1534, -6026, -5689; M0=-3286;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='E';  M=   354, -6778,   -51,  2040, -3417, -2233,  -881, -2039,  1167, -2164, -5867,  -839, -2753,  1260,   299,   384,   347, -1660, -6961, -1083; M0=-952;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='E';  M=   251, -6778,  1247,  2719, -7099, -2606, -4937, -6850,  -153, -4549, -1600, -1939, -6372,  2398, -2175, -1633, -1691, -2971, -6961, -2167; M0=-2284;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='L';  M= -1353, -5921, -8475, -7844,   688, -7705, -6573,  -465, -7450,  2824,  1035, -7354, -7704, -7025, -3572, -6800, -2432,  1037, -6353, -3046; M0=-3896;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='A';  M=  3423, -1247, -9374, -2035, -9641,   -16, -8937, -9461, -9594, -9721, -8755, -8013, -8043, -3291, -9250,   256, -6822, -3230, -9867, -3152; M0=-5388;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='E';  M=    43, -6778,  1053,  2264, -2031, -1712,    61, -2489,  1630, -2642, -2712,  -541, -6372,  -391,   999, -1025,  -851, -3135, -6961, -3128; M0=-1286;
/I:         MM=-6; MI=-13343; MD=-7874; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='K';  M=   481, -6745, -1718,   206, -2601, -1470, -2448,  -207,  2063,   521,   842, -1877, -6374,    81,  1686, -2216, -2779, -1386, -6936,  -197; M0=-1051;
/I:         MM=0; MI=-13337; MD=-14379; IM=-894; II=-1115; DM=-340; DD=-2251;
/M: SY='I';  M=   991,    11, -7967, -7331, -1833, -3882, -6042,  1848, -6926,  1716,   329, -6815, -7219, -6549, -6727,   797,   642,  -184, -5906, -5564; M0=-2869;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='G';  M= -2965,   304,   191, -1170, -1629,  3225,   956, -6849, -2209, -4350, -5867,  1101, -6372, -1462, -2161, -1741, -3451, -6400, -6961,  -934; M0=-2469;
/I:         MM=-20; MI=-13343; MD=-6175; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='V';  M= -5589, -2131, -7935, -2168, -1485, -2452, -2569,  1945,  -832,   821,   989, -6783, -7187, -6516, -6694, -1333,  -683,  2610,  -240, -1527; M0=-2426;
/I:         MM=-22; MI=-6421; MD=-8152; IM=-776; II=-1265; DM=-157; DD=-3274;
/M: SY='S';  M=  -259, -6773,   338, -2660, -7095, -1076,   615, -6845,  -211, -6790, -2725,  -240,   -60,  -854, -1514,  2555,  1653, -3162, -6957, -6274; M0=-2078;
/I:         MM=0; MI=-13338; MD=-14380; IM=-894; II=-1115; DM=-376; DD=-2122;
/M: SY='R';  M=  -842, -6773, -2732, -1053, -1966, -2209,   140, -1890,  1277, -1700, -2627,  -830,   674,  2073,  2372, -2611, -1039,   194, -6958,  -345; M0=-1004;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='S';  M=   515, -6778, -3468, -1930, -7099,   -48, -2513, -3811,  -397, -3595, -1663,   421,  -262,  1935,  -525,  2177,   727, -1604, -6961, -3128; M0=-1384;
/I:         MM=-11; MI=-8131; MD=-7979; IM=-1509; II=-624; DM=-701; DD=-1378;
/M: SY='T';  M=   764, -6133, -5684, -2326, -1186, -1597, -1631, -3754, -2683, -1691,  1426,  -331, -6617,   408, -1214,   319,  2467,  -994, -6472,  2269; M0=-1484;
/I:         MM=0; MI=-13337; MD=-14379; IM=-894; II=-1115; DM=-353; DD=-2204;
/M: SY='I';  M= -3205, -7594,-10703,-10254, -3184,-10511, -9723,  2999,-10133,  1477, -1659,-10192, -9885, -9344, -9898, -9876, -8071,  1290, -8486,  1704; M0=-5966;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='S';  M=    20, -2277, -3419, -4845, -3533,  -123, -2477, -1347, -1338, -3113, -5552,   701, -6492,   571,  -469,  2919, -1100, -1918,  -299, -1007; M0=-1614;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='R';  M=  -382, -6778,  -151,  -400, -2474,  -648,   731, -6850,  1784, -1467,  -414,  1182, -6372,  1234,  1943,   216, -5244, -6400, -6961,  -578; M0=-1659;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='W';  M= -3032, -5520, -8039, -7406,  -661, -7245, -2533,  2464, -7002,   734,   448, -6887, -7290, -6617, -2837, -6331, -5638,  -369,  3802,  2799; M0=-3745;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='E';  M= -7021, -6806, -8976,  3827,  -985, -8543, -7211, -2171, -3732, -1221, -5380, -7950, -8469, -7265, -3580, -7739, -2928, -2361, -7273, -7022; M0=-4705;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='N';  M= -1234, -2124, -3385, -1887, -7099, -3183,  -107, -3994,  1118, -1932, -5867,  2420, -6372,   497,  1884,  1049,   851, -2544, -6961, -3065; M0=-1733;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='G';  M= -1373, -2367,   304,   -96, -7129,  3291, -4963, -6880, -1860, -3436, -5898,  1064, -6396, -1688, -1644, -2257, -5273, -6430, -6991, -2209; M0=-2739;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='K';  M= -1395, -6778, -1296,   672, -7099, -2533,   -30,  -573,  1973,  -683,  -467,   218, -1649,   914,  1514,   -55,   -80, -1041, -6961,  -466; M0=-836;
/I:         MM=-83; MI=-13343; MD=-4168; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='R';  M=   368, -2299, -2027, -2239, -2526, -1538,   410,  -155,   -55, -2259,  -312,   460, -6309,  -185,  2117,   593,   963,  -351, -6836,  1202; M0=-850;
/I:         MM=-3734; MI=-13260; MD=-113; IM=-894; II=-1115; DM=-229; DD=-2771;
/M: SY='K';  M=   752, -3911,  -341, -1740, -4232,   250, -2073, -3982,  2254, -3927, -3001, -2050,  -735,  -128,  -392,  1578,    14,  -920, -4095, -3413; M0=-1132;
/I:         MM=-2; MI=-10281; MD=-11323; IM=-894; II=-1115; DM=-92; DD=-4023;
/M: SY='N';  M= -1218, -2131,     4,   733, -2300, -1767, -2181,  -256,   509, -1425, -1053,  2181, -2185,  -339,   276,   938,    33,  -388, -6881,   266; M0=-529;
/I:         MM=-6; MI=-8054; MD=-14307; IM=-1893; II=-453; DM=-50; DD=-4884;
/M: SY='P';  M=  -698, -5438, -3819, -3863, -1453, -2321, -6023,   936, -6896,  -460, -4641, -6791,  3657, -1515, -3434, -3252, -1819,   -28, -1909, -2053; M0=-2250;
/I:         MM=-5; MI=-13343; MD=-8172; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='S';  M= -1550, -6773,   728, -2269, -7094,  -583, -1431, -2965,    38, -4311, -2582,   713,  -959, -1385,  -212,  2519,  1490, -2862, -6957, -6274; M0=-1618;
/I:         MM=0; MI=-13338; MD=-14380; IM=-894; II=-1115; DM=-376; DD=-2122;
/M: SY='I';  M=   187, -6194, -1821, -1990,   -30, -1279, -1631,  1695, -1159,  1255,    33, -1623,   -76,    66, -2571,  -409,   -75,   654, -6522,  -247; M0=-580;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='D';  M=  -192, -1971,  1851,  1729, -2043, -1518,  -673, -2039,   688, -1880, -5867,    -1,  -856,   644,  -661,   494,    58, -3072, -1968, -2068; M0=-735;
/I:         MM=-6; MI=-13343; MD=-7953; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='T';  M= -1149, -6675,  -735,  -889,  -777, -6303, -1038,  -253,   576,    80,   827,   747, -3619,  -650,  -674,  -539,  2245,   782, -6886,  -882; M0=-914;
/I:         MM=-34; MI=-6464; MD=-6360; IM=-56; II=-4725; DM=-350; DD=-2216;
/M: SY='L';  M=   890,  -784, -3866, -3988,  -839, -7139, -6011,  1252, -3965,  2571,   598, -6785, -7189, -3485, -6696, -2599, -5532,   -22,  -678, -5534; M0=-2810;
/I:         MM=-6; MI=-13325; MD=-7922; IM=-894; II=-1115; DM=-570; DD=-1615;
/M: SY='I';  M=   -21, -1371, -1288,   786,    53, -2213, -1647,  1287,  1148,   -27,   352, -1343, -3679,   868,  -488,  -615, -2717,   413,   864,   170; M0=-472;
/I:         MM=0; MI=-13332; MD=-14374; IM=-894; II=-1115; DM=-240; DD=-2708;
/M: SY='K';  M=   103, -6778, -1025,   149, -3287, -4012, -2534,  -909,  2736,  -581, -1211,  -642, -2246,   722,  1122,  -432,  -724, -3167, -6961, -6278; M0=-1210;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='I';  M= -3079, -1906, -8092, -7460, -1129, -7304, -6182,  2675, -3675,  2300,   574, -6950, -7345, -6680, -6861, -6392, -2795,    25, -6035,  -277; M0=-3691;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='A';  M=  2858,  1918, -3676,  -338, -3262, -2668, -2422, -1506, -3780,  -890,   -40, -6339, -7056, -3250, -2239,  1086, -2001, -1048, -6003, -2898; M0=-1887;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='K';  M=  -168, -6778,  1306,  1163, -7099, -1254,   439, -2010,  1793, -3012, -1715,   894, -6372,   879,   769,   -51,  -845, -2498, -6961, -2909; M0=-1275;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='A';  M=  2155,  -355, -7567, -2169,   239, -1346, -1751,   792, -1098,   310, -4682, -2500, -3585, -3332, -1835, -1974, -1099,  1351, -5933,  1146; M0=-1278;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='L';  M= -6799,  -231, -9087, -8493,  2526, -8373, -2716,  -858, -8107,  2640, -1050, -7971, -3527, -7572, -7852, -7484, -1834, -5771, -6529,  1656; M0=-4672;
/I:         MM=-12; MI=-13343; MD=-6955; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='N';  M= -3173, -6770,  1537,   774, -7091,  2151,  -290, -6842,    66, -6786, -5859,  2286, -2137,   675,  -970, -2915, -2737, -3991, -6953, -6270; M0=-2474;
/I:         MM=0; MI=-13331; MD=-14373; IM=-894; II=-1115; DM=-233; DD=-2746;
/M: SY='V';  M= -1350,  1416, -7891, -2165, -1415, -2589, -2301,  1128,  -360,  -347,  -405, -3560, -7198, -3259, -2217, -1406,   522,  2887, -5899, -2106; M0=-1704;
/I:         MM=-4163; MI=-13343; MD=-83; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='P';  M= -1585,  1454, -1431,  1141, -3373,  -268, -1211, -3121,   447, -3065, -2141, -1192,  2228,  1631,   393,   700, -1523, -2674, -3231, -2553; M0=-963;
/I:         MM=-3022; MI=-9183; MD=-192; IM=-894; II=-1115; DM=-8250; DD=-5;
/M: SY='L';  M= -1554, -1348, -2774, -2539,  -219, -2634, -1805,   381, -2112,  2717,   678, -2400, -2702, -1930, -2051, -2210, -1566,   -12, -1413, -1056; M0=-1239;
/I:         MM=-1355; MI=-6191; MD=-748; IM=-894; II=-1115; DM=-7235; DD=-10;
/M: SY='I';  M= -1021,  -808, -2647, -2378,  -596, -2476, -1863,  3052, -2051,   326,   342, -2189, -2595, -1954, -2080, -1887, -1057,  1184, -1704, -1268; M0=-1120;
/I:         MM=-33; MI=-6055; MD=-7097; IM=-894; II=-1115; DM=-7244; DD=-10;
/M: SY='K';  M=  -674, -1558,  -775,  -327, -2177, -1504,  -329, -1720,  2263, -1820, -1071,  -467, -1734,    47,   243,  -679,  2081, -1391, -2029, -1588; M0=-686;
/I:         MM=-667; MI=-6680; MD=-1473; IM=-894; II=-1115; DM=-6080; DD=-21;
/M: SY='I';  M= -2559, -2119, -4896, -4346,  2377, -4455, -3103,  2654, -4066,  1597,   265, -4076, -4003, -3258, -3745, -3673, -2460,  -448, -2227, -1976; M0=-2208;
/I:         MM=-12; MI=-7543; MD=-8585; IM=-894; II=-1115; DM=-6582; DD=-15;
/M: SY='W';  M=  -868, -2196,  -766,  1165, -2469, -1855,  -509, -2177,  1187, -2185, -1301,  -514,   859,  1776,  -553,  -775,  -805,   645,  2748, -1764; M0=-618;
/I:         MM=-8; MI=-8029; MD=-9071; IM=-894; II=-1115; DM=-5724; DD=-28;
/M: SY='F';  M= -1361, -1528,   474, -1846,  2796, -2704, -1490,   636,   495, -1396,  -718, -1860, -2773, -1495, -1883,   178,   755,   769, -1952, -1554; M0=-752;
/I:         MM=-5; MI=-8649; MD=-9692; IM=-894; II=-1115; DM=-41; DD=-5152;
/M: SY='S';  M= -1470, -6740,  1226,   373, -7061, -6240,  -886, -3659,  -491, -2371, -5829,  -760,  1284, -1279,  -623,  2142,  1596, -6362, -6923, -6240; M0=-1979;
/I:         MM=0; MI=-13303; MD=-14345; IM=-894; II=-1115; DM=-96; DD=-3955;
/M: SY='I';  M=  -392, -5459, -3847, -1348,  -149, -4083, -1013,  1839, -1976,   974,   740, -6688,  1183, -2221, -2403, -1337,   619,  1144,  -251,  -740; M0=-1095;
/I:         MM=0; MI=-13335; MD=-14377; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='D';  M=   629, -1963,  2508,   899, -7092,  -743, -1666, -2006,  -427, -3034, -5860,   340,  -832,  -682, -1687,   665,    45,  -710, -6954, -3167; M0=-1059;
/I:         MM=0; MI=-13332; MD=-14375; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='Y';  M=  -829, -6738,  1471,  1635,   -13, -1928, -1085,  -975, -1150,  -911, -2421, -1564, -2620,  -312, -1974,  -846,  -730, -1119,  2080,  2722; M0=-796;
/I:         MM=-6041; MI=-13308; MD=-22; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='F';  M= -1294, -2730,  2199,  1950,  2308, -1686,  -754, -2671,  -723, -2675, -1924,  -318, -2055,  -414, -1352, -1098, -1295, -2298, -2768, -1933; M0=-1036;
/I:         MM=-73; MI=-4909; MD=-5951; IM=-894; II=-1115; DM=-3; DD=-8953;
/M: SY='L';  M= -2582, -1979, -7903, -7267,  2042, -7105, -2436,   941, -3910,  2642, -2341, -3429, -7155, -1777, -2689, -2217, -5498,  -292,   -17, -2927; M0=-2859;
/I:         E0=-1000; E1=-1000;
» more

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_05 which contains 572'214 sequence entries.


Total number of hits 266 in 266 different sequences
Number of true positive hits 261 in 261 different sequences
Number of 'unknown' hits 0
Number of false positive hits 5 in 5 different sequences
Number of false negative sequences 7
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 98.12 %
Recall (true positives / (true positives + false negatives)) 97.39 %

Comments [info]

Taxonomic range [info] Archaea, Bacteriophages, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] window20
Author [info] PS_Langendijk_Genevaux
Feature key [info] DOMAIN
Feature description [info] HTH cro/C1-type
Version [info] 9

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 261 sequences 

ANSR_BACSU  (Q07683), BCRR_ENTFL  (Q5WNW9), CEBA_BACAM  (P23939), 

CLGR_MYCS2  (A0QVU1), CLGR_MYCTO  (P9WMH6), CLGR_MYCTU  (P9WMH7), 
COPR_STRAG  (P24716), CPIR_ACIAD  (Q6F9U5), DDROC_DEIDV (C1CYP4), 
DDROP_DEIDV (C1D3U5), DICA_ECOLI  (P06966), DNU4_RHORU  (P15017), 
EDF1_BOVIN  (Q3T0V7), EDF1_CHICK  (Q5ZMC0), EDF1_DANRE  (Q6PBY3), 
EDF1_HUMAN  (O60869), EDF1_MOUSE  (Q9JMG1), EDF1_RAT(P69736), 
EDF1_XENLA  (Q6GPQ6), GLMS_METJA  (Q58815), HICB1_PHOLL (Q7N1I3), 
HICB_ECO57  (P67698), HICB_ECOLI  (P67697), HIGA1_MYCTO (P9WJA6), 
HIGA1_MYCTU (P9WJA7), HIGA1_VIBCH (Q9KMG4), HIGA2_MYCTU (O53467), 
HIGA3_MYCTU (O53333), HIGA_ECOL6  (P67702), HIGA_ECOLI  (P67701), 
HIGA_PROVU  (Q7A224), HIGA_SHIFL  (P67703), HIPB_ECOL6  (Q8FHF3), 
HIPB_ECOLI  (P23873), HIPB_SHEON  (Q8EIX4), HPPE_STRWE  (Q56185), 
IMMF_BPPH1  (P13772), IMMR_BACSU  (P96631), MBF1A_ARATH (Q9SJI8), 
MBF1B_ARATH (Q9LXT3), MBF1C_ARATH (Q9LV58), MBF1_ASPFU  (Q4WX89), 
MBF1_CANAL  (Q5A940), MBF1_CANGA  (Q6FJN0), MBF1_CRYNB  (P0CO31), 
MBF1_CRYNJ  (P0CO30), MBF1_DEBHA  (Q6BXQ8), MBF1_EMENI  (Q5B8Y4), 
MBF1_EREGS  (Q752P7), MBF1_GIBFU  (Q53IP3), MBF1_KLULA  (Q6CIP4), 
MBF1_NEUCR  (Q871W6), MBF1_SCHPO  (O94700), MBF1_YARLI  (Q8TG23), 
MBF1_YEAST  (O14467), MPNS_NITMS  (A9A1T2), MQSA_ECOLI  (Q46864), 
MTS2_SHISO  (P34879), MTS9_STAAU  (P23737), MTSA_LACLC  (P34877), 
MUNC_MYCSP  (P43640), NADR_ECOLI  (P27278), NADR_SALTY  (P24518), 
PCCR_CERS4  (Q3J4E6), PEZA_STRPN  (Q97QZ2), PRPR_MYCTU  (O06581), 
PRTR_PSEAE  (Q06553), PUUR_ECOLI  (P0A9U6), PUUR_SHIFL  (P0A9U7), 
RAMB_CORGL  (Q8NTD8), RAMB_MYCTO  (P9WMI0), RAMB_MYCTU  (P9WMI1), 
RCRO_BP434  (P03036), RDGA_PECCC  (Q47587), RGG_STRGC   (P49330), 
RGHRB_BACSU (O32237), RGHR_BACSU  (O32236), RODZ_CITK8  (A8AD70), 
RODZ_CROS8  (A7MGV6), RODZ_ECO24  (A7ZPV9), RODZ_ECO27  (B7UGW2), 
RODZ_ECO45  (B7MI01), RODZ_ECO55  (B7LDA8), RODZ_ECO57  (Q7ABM8), 
RODZ_ECO5E  (B5Z0Y5), RODZ_ECO7I  (B7NRG6), RODZ_ECO81  (B7MYF1), 
RODZ_ECO8A  (B7M7M0), RODZ_ECOBW  (C4ZX91), RODZ_ECODH  (B1XAZ1), 
RODZ_ECOHS  (A8A322), RODZ_ECOK1  (A1AE54), RODZ_ECOL5  (Q0TEW9), 
RODZ_ECOL6  (Q8FF56), RODZ_ECOLC  (B1IWE5), RODZ_ECOLI  (P27434), 
RODZ_ECOLU  (B7N6A4), RODZ_ECOSE  (B6I588), RODZ_ECOSM  (B1LNH1), 
RODZ_ECOUT  (Q1R8L7), RODZ_ENT38  (A4WD94), RODZ_ERWT9  (B2VE88), 
RODZ_ESCF3  (B7LKC2), RODZ_KLEP3  (B5XNL4), RODZ_KLEP7  (A6TCD5), 
RODZ_PECAS  (Q6D275), RODZ_SALA4  (B5F199), RODZ_SALAR  (A9MHL4), 
RODZ_SALCH  (Q57LI5), RODZ_SALDC  (B5FR64), RODZ_SALEP  (B5R583), 
RODZ_SALG2  (B5RCZ3), RODZ_SALHS  (B4TD94), RODZ_SALNS  (B4T0Q0), 
RODZ_SALPA  (Q5PNI3), RODZ_SALPB  (A9N200), RODZ_SALPC  (C0PYM9), 
RODZ_SALPK  (B5BAY4), RODZ_SALSV  (B4TR96), RODZ_SALTI  (Q8Z4P3), 
RODZ_SALTY  (Q8ZN53), RODZ_SERP5  (A8GHW6), RODZ_SHIB3  (B2TXU1), 
RODZ_SHIBS  (Q31XX4), RODZ_SHIDS  (Q32D46), RODZ_SHIF8  (Q0T203), 
RODZ_SHIFL  (Q83QK7), RODZ_SHISS  (Q3YZ36), RODZ_YERE8  (A1JKS1), 
RODZ_YERP3  (A7FFY8), RODZ_YERPA  (Q1C5I7), RODZ_YERPB  (B2K9Q1), 
RODZ_YERPE  (Q7CJM7), RODZ_YERPG  (A9R803), RODZ_YERPN  (Q1CK92), 
RODZ_YERPP  (A4TMT8), RODZ_YERPS  (Q667Z8), RODZ_YERPY  (B1JS04), 
RPC1_BP434  (P16117), RPC1_BPD3   (Q37906), RPC1_BPHK0  (P18680), 
RPC1_BPPH8  (P14819), RPC1_LAMBD  (P03034), RPC2_BPP22  (P69202), 
RPC_BP163   (P15238), RPC_BPP2(P04132), RPC_BPPH1   (P06153), 
RSTR_VIBCH  (O34419), RSTR_VIBCL  (O85264), SINR_BACLI  (P22753), 
SINR_BACSU  (P06533), SLRR_BACSU  (P71049), SUTR_ECOLI  (P77626), 
TR96_PRORE  (Q79RI9), TRME_SHEPU  (Q8GJK1), TRSX_VIBCL  (Q79S39), 
VAPA_DICNO  (Q57475), VAPI_DICNO  (Q46560), VAPZ_DICNO  (Q46561), 
VG30_BPPH8  (P14816), VP02_BPAPS  (Q9T1U6), VPB_HAEIN   (P96343), 
VSH7_DICDI  (P14327), XRE_BACSU   (P23789), Y023_MYCBO  (P67705), 
Y023_MYCTO  (P9WMI2), Y023_MYCTU  (P9WMI3), Y031_METPE  (B8GI76), 
Y045_SINMW  (A6U5H5), Y1143_METST (Q2NF79), Y1164_METJA (Q58564), 
Y1195_RICCN (Q92GC8), Y1251_HAEIN (Q57089), Y1268_SULIK (C4KH08), 
Y1268_SULTO (Q971W0), Y1269_SULIY (C3NDZ6), Y1284_SULIM (C3MYR0), 
Y1316_THEGJ (C5A6F6), Y1320_NATPD (Q3ISY4), Y1328_METTH (O27383), 
Y1334_SULIA (C3N5E2), Y1344_SULAC (Q4J946), Y1363_THEAC (Q9HIH6), 
Y1371_SULIL (C3MPR6), Y1416_COXBU (Q83BT6), Y1476_HAEIN (P44207), 
Y1514_METVS (A6USD6), Y1526_METAR (Q0W4J4), Y1545_METJA (Q58940), 
Y1579_SULIN (C3NHQ7), Y160_METLZ  (A2SPT1), Y1627_ARCFU (O28646), 
Y1627_PYRAE (Q8ZWT6), Y1702_METM7 (A6VJY2), Y1725_METS5 (A4YHH8), 
Y1787_ARCFU (O28487), Y1793_ARCFU (O28481), Y1808_PYRHO (O59472), 
Y1811_METBU (Q12V29), Y1851_PYRFU (Q8TZX4), Y195_METB6  (A7I4Q7), 
Y210_METM6  (A9A7A8), Y2112_HALSA (Q9HNG7), Y2318_METBF (Q46A50), 
Y2319_SYNE7 (P37371), Y2347_METMJ (A3CY20), Y2414_ARCFU (O30257), 
Y2519_HALMA (Q5UZI1), Y2548_METHJ (Q2FTM0), Y272_METJA  (Q57720), 
Y273_HALLT  (B9LS33), Y294_THEVO  (Q97C11), Y3058_HALWD (Q18FU6), 
Y3524_METAC (Q8TK90), Y367_PYRAB  (Q9V1R0), Y3946_HALS3 (B0R731), 
Y410_RHIME  (P0C5S2), Y444_METMA  (Q8PZP8), Y453_METS3  (A5UKD0), 
Y474_MYCTO  (P9WMH8), Y474_MYCTU  (P9WMH9), Y497_RICPR  (Q9ZD50), 
Y4AM_SINFN  (P55360), Y4DJ_SINFN  (P55409), Y4DL_SINFN  (P55411), 
Y4MF_SINFN  (P55565), Y4WC_SINFN  (P55681), Y529_METJA  (Q57949), 
Y539_THEKO  (Q5JF28), Y557_PICTO  (Q6L1L0), Y586_METJA  (Q58006), 
Y621_METJA  (Q58038), Y659_HAEIN  (P44030), Y666A_HAEIN (O86228), 
Y668_RICCN  (Q92HV3), Y678_METMP  (Q6LZF1), Y766_RICPR  (Q9ZCH6), 
Y778_AERPE  (Q9YDZ1), Y898_METM5  (A4FYC1), Y942_SACS2  (Q97ZH1), 
Y967_METTH  (O27048), YAZB_BACSU  (O31417), YBAQ_ECOL6  (P0A9T7), 
YBAQ_ECOLI  (P0A9T6), YDDM_ECOL6  (P67700), YDDM_ECOLI  (P67699), 
YGZD_BACSU  (C0H3X9), YIAG_ECO57  (P0A9V7), YIAG_ECOL6  (P0A9V6), 
YIAG_ECOLI  (P0A9V5), YOBD_BACSU  (O34647), YONR_BACSU  (O31943), 
YOPO_BACSU  (O34791), YOPS_BACSU  (O34766), YOZG_BACSU  (O31834), 
YQAE_BACSU  (P45902), YQAF_BACSU  (P45903), YQAG_BACSU  (P45904), 
YR559_MIMIV (Q5UR40), YSMA_SERMA  (P14307), YVZC_BACSU  (O32235)
» more

UniProtKB/Swiss-Prot
False negative sequences		 7 sequences 

HEPD_STRVT  (Q5IW40), HICB2_PHOLL (Q7MZD8), HIGA2_VIBCH (Q9KMA5), 

HPPE_PSESX  (Q9JN69), MBF1_PYRO7  (Q52BY4), Y1005_METKA (Q8TWM7), 
YOTL_BACSU  (O31865)
» more

UniProtKB/Swiss-Prot
'Partial' sequences		 1 sequence 

NADR_KLEPN  (P47981)


				
	

	

		UniProtKB/Swiss-Prot
False positive sequences		
		
			5 sequences
			


			
CYNS_AQUAE  (O66587), CYNS_MEDTR  (B7FKW7), CYNS_PHANO  (Q0UBT2), 

			
CYNS_THAPS  (B5YM03), Y173_METJA  (Q57637)


			
			» more
			


				
	

	

		PDB
[Detailed view]		
		
			102 PDB
			


			1ADR; 1B0N; 1LLI; 1LMB; 1LRP; 1PER; 1PRA; 1R63; 1R69; 1RIO; 1RPE; 1SQ8; 
			
				1X57; 1ZUG; 1ZZ6; 1ZZ7; 1ZZ8; 1ZZ9; 1ZZB; 1ZZC; 2BNM; 2BNN; 2BNO; 2CRO; 
				2EBY; 2ICP; 2ICT; 2KZ8; 2L49; 2OR1; 2P5T; 2R1J; 2R63; 2WIU; 3BDN; 3CRO; 
				3DNV; 3FMY; 3G7D; 3GBF; 3GN5; 3HZI; 3JXB; 3JXC; 3JXD; 3KZ3; 3O9X; 3QQ6; 
				3RZZ; 3SCF; 3SCG; 3SCH; 3ZKC; 4J1W; 4J1X; 4MCT; 4MCX; 4PU3; 4PU4; 4PU7; 
				4PU8; 4YAR; 4YG1; 4YG4; 4YG7; 4Z58; 4Z59; 4Z5C; 4Z5D; 4Z5H; 5IFG; 5J9I; 
				5JAA; 5K98; 5TN0; 5WOQ; 5YCL; 6B9S; 6B9T; 6CF1; 6CHV; 6HPB; 6HPC; 6IRP; 
				6JQ4; 6KML; 6KMQ; 6LTY; 6LTZ; 6RMQ; 6RNX; 6RNZ; 6ZVH; 6ZVI; 7EWC; 7EWD; 
				7EWE; 7JVT; 7NRD; 7T8I; 8A0W; 8A0X
			
			

			» more