Entry: PS51063

Forthcoming changes to the profile format
General information about the entry

Entry name [info] HTH_CRP_2
Accession [info] PS51063
Entry type [info] MATRIX
Date [info] JAN-2005 (CREATED); OCT-2013 (DATA UPDATE); MAR-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00041
Associated ProRule [info] PRU00387

Name and characterization of the entry

Description [info] Crp-type HTH domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=83;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=78;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=3.2152481; R2=0.0229581; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=4531.50753; R2=12.76054; TEXT='HScore';
/CUT_OFF: LEVEL=0; SCORE=231; N_SCORE=8.5; H_SCORE=7466; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=144; N_SCORE=6.5; H_SCORE=6356; MODE=1; TEXT='?';
/DEFAULT: B1=*; E1=*; MM=*; II=*;
...
                A   C   D   E   F   G   H   I   K   L   M   N   P   Q   R   S   T   V   W   Y
/I:         B1=-85; E0=*; BD=-59;
/M: SY='R'; M=-31,-46, -5, -6,-11,-18, 11,-47, 17,-14,  5,  9,-42, 17, 18,  6,-31,-42,-48,  8; M0=-13;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='D'; M=-31, -2, 21, -5,-49,  2,  7,-47, -5,-46,-37, 14, -4, -8,  7, 10, 13,-42,-48,-41; M0=-14;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='A'; M= 22,-32,-56,-50,-32,-20,-38,  9,  1, -2,  6,-45,-13,-42,-16, -4,-14, 18,-37,-33; M0=-15;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='E'; M=-18,  0, -6, 18,-49, -9, -2, -2,  6,-15, -4, -2, 12, -9,  4, -8,  7,  3,-48,-41; M0=-6;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='E'; M=  5,-46,  0, 20,-49, 12, -3,-15,-23,-46, -5,  3,-42, 20,-12, -9, -5, -9,-48,-41; M0=-12;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='R'; M= -2,-62,-72,-54,-75,-62,-42,-67,  8,-64,-57,-51,-62,-38, 40,-20,-55,-65,-62,-61; M0=-44;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='L'; M=-18,-48,-80,-77,-53,-78,-78, 18,-76, 24,-40,-75,-75,-75,-77,-72,-15, 21,-71,-66; M0=-45;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='A'; M= 28, 22,-57,-51,-32,-11,-38, -4,-47, -2,-24,-46,-50,-12,-14,-10, -6,  2,-37,  1; M0=-18;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='H'; M=  6,-46, -4, -6,-49,  2, 23,-47, -4,-46,-37,  2,-42,  6, 10, 16,  8,-42,-48, -7; M0=-13;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='F'; M=  0,  9,-57,-51, 27,-49, -2, -4,-47,  9,-24,-46,-50,  2,-14, -9,  9,-13,-37, 21; M0=-17;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='L'; M=-67,-60,-91,-85,  9,-90,-75, 12,-83, 30,-28,-87,-78,-69,-77,-84,-65,-17,-59,-62; M0=-54;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='L'; M=  3,  2,-57,-51,-10,-10, 11, 10,-16, 21, -2,-14,-50,-12,-45,-40,-14,  3,  4, 11; M0=-14;
/I:         MM=0; MI=-110; MD=-57; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='W'; M= -8,-45,  9,  3,  3, -1, -2,  2,-12, -2,  5, 11,-42,  0, 10, -1,  0,-42, 13,  2; M0=-5;
/I:         MM=0; MI=-56; MD=-121; IM=-1; II=-34; DM=-4; DD=-22;
/M: SY='L'; M=-34,-32,-58,-19, -1,-50, -3,  0,-47, 29, -3,-46,-50,  2, -7,-41,-34,-13,  3,-34; M0=-23;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='C'; M= 19, 19,-45,-16,-10,  5,-35, -6, -7, -7,-26,-39,-47, -9,  0, 10,  3, -2,-39,  2; M0=-9;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='R'; M= -1,  0,  3, 14,-49, -9,-27, -2,  3,-46,-37,  3, -8, 14, 16, -3,  2,-42,-48,  1; M0=-10;
/I:         MM=0; MI=-110; MD=-58; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='R'; M= -1,-46,  7, 10,-49,-19,  6, -7,  4,-23, -5, -9,-42,  5, 22,  1,  3, -9,-47, -8; M0=-8;
/I:         MM=-2; MI=-110; MD=-28; IM=-9; II=-11; DM=-4; DD=-22;
/M: SY='F'; M=  1,-42,-11, -4, 22, -6, 19,-15,-22,  0, -2, -8,-11,  6,  3,  1,-11,-16,-44, 12; M0=-5;
/I:         MM=-1; MI=-108; MD=-45; IM=-9; II=-11; DM=-8; DD=-12;
/M: SY='G'; M=  0,-45,  2, -5,-48, 31,-26,-46,  2,-45,-36,-10,-41,-22,-12, -3,-12,-18,-47,-40; M0=-17;
/I:         MM=-2; MI=-109; MD=-30; IM=-9; II=-11; DM=-31; DD=-2;
/M: SY='E'; M=  3,-42,-27, 16, -9, -7,-25,  5, 10, -6,-33, -8, -3,  8,  3, -4, -3,  3,-44,-38; M0=-5;
/I:         MM=-2; MI=-107; MD=-28; IM=-9; II=-11; DM=-40; DD=-1;
/M: SY='P'; M=-10,-41,  1, 13, -7,-36,-22,-42, 11,-18,  2, -5, 17,  5, 17,  2, -8,-37,-43,-36; M0=-10;
/I:         MM=-2; MI=-105; MD=-32; IM=-9; II=-11; DM=-45; DD=-1;
/M: SY='C'; M=-10, 16,  3,  1,-39,  8,-22,  8,  1,-15,  4,-22,-36, -1,  2, -9, 15,  7,-40,-33; M0=-6;
/I:         MM=-1; MI=-103; MD=-40; IM=-9; II=-11; DM=-37; DD=-1;
/M: SY='E'; M=  6,-39,  7, 14, -8, -2,  6, -9, 10,-39,  2, -3,  8,  0, -4, -9, -7,-35,-41,  6; M0=-6;
/I:         MM=-1; MI=-103; MD=-49; IM=-9; II=-11; DM=-49; DD=-1;
/M: SY='D'; M= -9,  8, 20,  7,-42,  3, 14,-39, -3,-39,-29, 10,-35,  8,  3,  9, -7,-35,-40,-34; M0=-11;
/I:         MM=-31; MI=-102; MD=-2; IM=-9; II=-11; DM=-22; DD=-3;
/M: SY='T'; M=  7,-21,  8, -5,-23,-20, -7,-19, -4, -1,-12, -7,-21, 13,  9,-10, 15,  5,-24,-18; M0=-5;
/I:         MM=0; MI=-83; MD=-93; IM=-9; II=-11; DM=-42; DD=-1;
/M: SY='E'; M=-12,-27,-10, 18,-30,-22, -9,-28,  9,-27,-18, 18,  5, 12, -9,-11, 14,-23,-29,-22; M0=-9;
/I:         MM=0; MI=-86; MD=-96; IM=-9; II=-11; DM=-21; DD=-4;
/M: SY='A'; M= 18,-33, 13,  0,-36,  8,-15,-34,  2, -8,-24,  1,-29,  4,-16, -3, -2, -5,-35,-28; M0=-7;
/I:         MM=-36; MI=-96; MD=-1; IM=-9; II=-11; DM=-43; DD=-1;
/M: SY='P'; M=-22,-23,-27,-29,-35,-23,-28,-37,-30,-37,-33,-27, 41,-30,-30,-24,-25,-33,-31,-33; M0=-26;
/I:         MM=0; MI=-67; MD=-78; IM=-9; II=-11; DM=-60;
/M: SY='D'; M=-21,-29, 39, -6,-35,-19,-16,-38,-19,-37,-32,-10,-25,-14,-26,-20,-23,-33,-32,-29; M0=-21;
/I:         MM=-19; MI=-15; MD=-14; IM=-10; II=-10; DM=-14; DD=-7;
/M: SY='R'; M=-20,-34,  6, -1,-37, 14, 10,-35,-12, -1,-25,-16, -1,-11, 18,  7,  4, -7,-36,-29; M0=-7;
/I:         MM=-17; MI=-97; MD=-5; IM=-9; II=-11; DM=-5; DD=-17;
/M: SY='G'; M=-26,-41,-24, -4,-44, 30,  4,-41,  4,-41,-32,  5,-36,-17,  4, -7, -4,-37,-42,-36; M0=-17;
/I:         MM=-22; MI=-101; MD=-4; IM=-9; II=-11; DM=-3; DD=-25;
/M: SY='S'; M= -2,-37, -5,-16,-40,  4,-19,-37,-15,-14,-28,-19,  5, 16, 13, 20, -6, -1,-39,-32; M0=-9;
/I:         MM=0; MI=-101; MD=-111; IM=-9; II=-11; DM=-3; DD=-26;
/M: SY='W'; M= -4,  1,-15,-44,-11,  1, -4, 20,-17, -5, -2,-13,-15,-12,-15,  0,  9,  4, 20, 12; M0=-6;
/I:         MM=0; MI=-109; MD=-120; IM=-9; II=-11; DM=-15; DD=-6;
/M: SY='Y'; M=  0,  1,-39, 10,-10, -4,-32,  4, -5,  2, -2,-10, -5, -2,  0, -4,  8,  1,  5, 11; M0=-3;
/I:         MM=0; MI=-110; MD=-120; IM=-9; II=-11; DM=-6; DD=-15;
/M: SY='I'; M=-34,-32,-15,-51, 16,-18,-38, 26,-47, 11,  8,-46,-50,-43,-45,-17, -4, 13,-37,-33; M0=-19;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-4; DD=-22;
/M: SY='D'; M=-16,-46, 18,  7,-49,-41,-28,-16,-23,-21, -6,  6, 11,  0, 13,  5, 10, -5,-48,-41; M0=-10;
/I:         MM=-24; MI=-110; MD=-3; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='F'; M=-37,-32,-61,-55, 25,-56,-44,  9,-52, 21, 22,-53,-50,-42,-48,-48,-35,  7,-33,-34; M0=-29;
/I:         MM=-15; MI=-86; MD=-6; IM=-9; II=-11; DM=-58;
/M: SY='R'; M=-15,-27, 22, -4,-32,-19, -9,-30, -4,-29,-22, -7,-23, -5, 31,-14,-15,-26,-29,-24; M0=-13;
/I:         MM=-23; MI=-20; MD=-9; IM=-2; II=-32; DM=-3; DD=-25;
/M: SY='L'; M=-31, 14,-55,-48, 10,-47,  1, 18,-44, 22,  1,-43,-12,-41,-42,-38,-31,  7,-34,  5; M0=-21;
/I:         MM=0; MI=-107; MD=-118; IM=-9; II=-11; DM=-1; DD=-45;
/M: SY='P'; M= -5,-46,  7,-24,-49,-17, 12,-47,  0,-15,-37, -2, 30,  1,  3,-16, -1,-10,-48,  1; M0=-11;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='M'; M=-40,-38,-63,-17,  3,-56,-44, 20,-53, 20, 31,-52,-55,-12,-51,-47,-39, -2,-42, -1; M0=-27;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='T'; M= -4,-46,-13, -5,-49,-19,-28,-47,  0,-46,-37,-27,  0, -9,-14, 18, 29,-42,-48,-41; M0=-18;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='H'; M=-16,-41,-35,-29,-42,-44, 30,-14,  9, -8, -4,  5,-44, 22, 23,-33,-32, -7,  3,-39; M0=-17;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='Q'; M=  2,-46,-30, 16,-49,-17, -2,-47,  9,-24,-37, -3,-42, 30,  7, -9,  0,-42,-48,-41; M0=-16;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='D'; M=-10,-46, 25, 22,-49,-41, -1,-19,-23, -3, -5,-11,-42, 11,-11,-14,-12, -4,-48,-41; M0=-13;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='I'; M=-19,-49,-80,-75,-48,-77,-72, 30,-74, 20,  5,-73,-74,-71,-74,-70,-16,  3,-64,-62; M0=-43;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='A'; M= 33,-47,-74,-77,-74, 13,-67,-72,-74,-75,-65,-58,-58,-68,-70,  0,-45,-59,-76,-76; M0=-49;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='D'; M=-10,-46, 19, 13,-49,  4, -3,-47,  0,-21, -4, 14,-42,  5,-11,  9,-13,-17,-48, -9; M0=-10;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='M'; M= -1,-32,-55,-19, 19,-49,  5, 12,-10,  6, 25,-45,-50, -3,-44, -9,-12,-27,-37, 24; M0=-16;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='C'; M=  0, 22,-58,-52, -9,-50,-39, 12,-48, 20,-25,-47,-51,-44,-46,  8,  3,  8,-38,-34; M0=-21;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='G'; M=-18,  0,-74,-77,-74, 37,-67,-72,-74,-75,-65, -3,-58,-68,-70, -9,-45,-59,-76,-76; M0=-49;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='T'; M=  3, 11,-57,-51,-32,-49,-38,  8,-47, 13, 18,-46,-50,-43,-15,  7, 19,  2,-37,-33; M0=-19;
/I:         MM=-1; MI=-39; MD=-121; IM=0; II=-49; DM=-7; DD=-14;
/M: SY='T'; M=  4,-46,-12,-24,-49,-41,  7,-17,-12,-46,-37,-10,-42, -1,-13, 18, 30,-42,-48,-41; M0=-19;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='R'; M=-18,-32,-56,-50,-32,-20, -1, 10,-46, -1,-24,-45, 16,-42, 31,-18, -6, -7,-37,  3; M0=-17;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='E'; M=-16,-47,-30, 31,-50,-41,  6,-47,-24,-47,-37,-11,-13, -7, -3,  5,-31, 13,-48,-42; M0=-20;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='T'; M= -6,-47,-44,-40,-11,-47, 13,-54,-14,-56,-47, -2,-51,-39,-43, 12, 34,-49,-58,-53; M0=-29;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='V'; M=  0,-46,-76,-72,-13,-73,-67, 13,-70,  5,-39,-69,-71,-68,-71,-65,  3, 31,-63,-59; M0=-38;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='S'; M=-39, -1,-69,-67,-57, -8,-57, -6,-64,-12,-49, 18,-56,-60,-62, 28, 17,-48,-61,-58; M0=-32;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='R'; M=-20,-64,-66,-51,-73,-62,-41,-66, 12,-62,-55,-49,-61, -9, 38,-19, -6,-63,-60, -7; M0=-38;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='I'; M=  8,-32,-57,-50,-32,-18,-38, 17, -9, 12, -2,-46,-50,  7,-45,-20, 14, 11,-37,-33; M0=-16;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='L'; M=-67,-60,-91,-85, 18,-89,-75, 16,-83, 25, 21,-87,-78,-69,-77,-84,-65, -3,-59,-62; M0=-52;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='S'; M=  4,-46,-30,-24,-49,  7,  5,-46, 12,-21, -3, 10,-42,  5,  5, 13, 11,-42,  3, -9; M0=-12;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='K'; M=  9,  2,  4,  3,-49,-41,-28,-47, 21,-23, -3,-27,-42, 19, 13, -3,-31,-19,-48,-10; M0=-14;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='W'; M=-68,-61,-90,-85, 22,-89,-66,-36,-83, 28,  8,-84,-78,-69,-77,-83,-66,-45, 30,-49; M0=-56;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='R'; M=  8,-46,-12, 14,-49,-20, -3,  5, 17,-46,-37,-27,-42,  3, 20,-15,-14, -8,-48,-41; M0=-14;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='K'; M= -4,  0,  9, 12,-49,-10,  7,-47, 17,-46,-37, -2,-17, 15, 10,  0,  2,-42,-48,-41; M0=-13;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='E'; M= -2,-46,  7, 21,-49,-17, -2, -9,  3,-14, -3, -4,-42, 17, 12, -4,-14,-42,-48,-41; M0=-11;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='G'; M= -9,-47, -5,-12,-50, 30, -3,-48, 12,-47,-38, 12,-43, -8,-11,-17,-32,-44,-49,-42; M0=-20;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='W'; M=-16,-32,-57,-18, -2,-49,-38, 14,-18, 17, -2,-46,-50,-43,  0,-40, -6, 20, 20, -7; M0=-17;
/I:         MM=-1; MI=-59; MD=-40; IM=-2; II=-33; DM=-7; DD=-14;
/M: SY='I'; M=-20,-47,-80,-77,-53,-78,-79, 37,-76,  4,-40,-75,-75,-76,-78,-72,-53,  8,-71,-67; M0=-49;
/I:         MM=0; MI=-110; MD=-120; IM=-9; II=-11; DM=-2; DD=-32;
/M: SY='S'; M=  2, -1, -3, 11,-49, -4,  6, -8, -4,-14,-37,-10,-42, -1, 12, 16,  5,-10,-48,-41; M0=-7;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='I'; M= -9,-35,-43,-15,-11,-19, -4, 16,  0,  8,  5,-11,-16, -2, 14,-18, -6,  5,  6, 11; M0=-6;
/I:         MM=0; MI=-110; MD=-57; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='Q'; M= -9,-46, 15, 13,-49, -4, 12, -7,  1,-22, -3,-27,-15, 18,  8,  1,-30, -4,-47,  1; M0=-8;
/I:         MM=-62; MI=-57; MD=0; IM=-27; II=-2; DM=-4; DD=-22;
/M: SY='V'; M=-14,-13,-33,-32,-16,-27,-28,  7,-30, -8, -7,-28,-30,-29,-30,-22,-15, 34,-27,-22; M0=-17;
/I:         MM=0; MI=-68; MD=-78; IM=-9; II=-11; DM=0; DD=-67;
/M: SY='G'; M=-17,-46,  7, -5,-49, 24, 12,-47, 11,-46,-37,  6, -6, -9, 12, -9,-31,-42,-48,-41; M0=-16;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='R'; M= -5,-46,  4,-24,-13,  0,-27,-47, 21,-46, -4, -2,-13,  8, 24,  2,-31,-42,-48,-41; M0=-15;
/I:         MM=-62; MI=0; MD=-121; IM=-2; II=-31; DM=-7; DD=-14;
/M: SY='I'; M=-35,  3,-58,-52,  8,-50,  5, 28,-48, 10,-25,-47,-51,-11,-46,-41,-34, 15,-37,  8; M0=-24;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='I'; M= -5,  1,-16,  4,-11,-46,  5, 19,  2,  4, 11,-36,-46, -3,  7,-16,  3,  1,-40,  2; M0=-8;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='I'; M=-54,  0,-81,-77, -1,-79,-79, 31,-77,  6,-39,-76,-76,-75,-78,-73,-54, 22,-70,-66; M0=-48;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='L'; M=-15,-42,-15,-12,-11,-42, 11,  7,  6, 16, -5,  2,  0, -8,  7,-32,  2, -8,-45,  7; M0=-7;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='D'; M=-10,-46, 29,-12,-49,-17,-28,-47, 12,-46,-37, 22,-15,  0,-11,-10,-31,-42,-48, -9; M0=-18;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='P'; M= -4,  1,-50, -7,-11,-48, -4, -6, -3, 10, 17,-42, 23,-10,  3,-19,  0,  0,-38, -8; M0=-9;
/I:         MM=0; MI=-110; MD=-121; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='D'; M=  1,-46, 20, 17,-12, -9, -3, -9,  6,-23,-37,-27, -6,  5,  1, -9,-13,  3,-48,-41; M0=-7;
/I:         B0=*; E1=-10;
» More

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_04 which contains 544'996 sequence entries.


Total number of hits 72 in 72 different sequences
Number of true positive hits 71 in 71 different sequences
Number of 'unknown' hits 1
Number of false positive hits
Number of false negative sequences 10
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 87.65 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] window20
Author [info] PS_Langendijk_Genevaux
Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Feature key [info] DOMAIN
Feature description [info] HTH crp-type
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
71 sequences

AADR_RHOPA  (Q01980), ANR_PSEAE   (P23926), ANR_PSEFL   (O85222), 
ARCR_STAA1  (A7X715), ARCR_STAA2  (A6U515), ARCR_STAA9  (A5IW58), 
ARCR_STAAB  (Q2YWH5), ARCR_STAAM  (Q99R06), ARCR_STAAN  (Q7A381), 
ARCR_STAAR  (Q6GDH1), BTR_BORPE   (Q08530), CLP_XANAC   (Q8PQ45), 
CLP_XANC5   (Q3BYB3), CLP_XANC8   (Q4UZF6), CLP_XANCB   (B0RN01), 
CLP_XANCP   (P22260), CLP_XANOM   (Q2NYD9), CLP_XANOP   (B2SL05), 
CLP_XANOR   (Q5GV61), CMR_MYCTO   (P9WMH4), CMR_MYCTU   (P9WMH5), 
CRP_ECO57   (P0ACK0), CRP_ECOL6   (P0ACJ9), CRP_ECOLI   (P0ACJ8), 
CRP_ENTAE   (P0A2T7), CRP_HAEIN   (P29281), CRP_MYCTO   (P9WMH2), 
CRP_MYCTU   (P9WMH3), CRP_PASMU   (O05689), CRP_SALTY   (P0A2T6), 
CRP_SHIFL   (P0ACK1), CYSR_SYNE7  (P27369), CYSR_SYNY3  (Q55854), 
ETRA_SHEON  (P46148), FIXK_AZOC5  (P26488), FIXK_BRADU  (P29286), 
FIXK_RHIME  (P13295), FLP_LACCA   (P29284), FNRA_PSEST  (P47200), 
FNRL_RHOS4  (P51007), FNRN_RHILV  (P24290), FNR_AGGAC   (Q9EXQ1), 
FNR_AGGAP   (Q47948), FNR_BACSU   (P46908), FNR_CAPOD   (Q46158), 
FNR_CAPSP   (Q46159), FNR_ECO57   (P0A9E7), FNR_ECOL6   (P0A9E6), 
FNR_ECOLI   (P0A9E5), FNR_HAEIN   (P45199), FNR_KLEOX   (Q9AQ50), 
FNR_PASMU   (Q9CMY2), FNR_SALMS   (P0A2T9), FNR_SALTI   (Q8Z787), 
FNR_SALTY   (P0A2T8), FNR_SHIDY   (Q9LA24), FNR_SHIFL   (P0A9E8), 
FNR_VIBC3   (A5F890), FNR_VIBCH   (P0C6D0), FNR_YERPE   (Q8ZE82), 
HLYX_ACTPL  (P23619), NTCA_ANAVT  (P0A4U7), NTCA_NOSS1  (P0A4U6), 
NTCA_SYNE7  (P29283), NTCA_SYNY3  (P33779), PRFA_LISMO  (P22262), 
VFR_PSEAE   (P55222), YCF28_PORPU (P51342), YCF28_PYRYE (Q1XDE5), 
YEIL_ECO57  (P0A9F0), YEIL_ECOLI  (P0A9E9)
» More

UniProtKB/Swiss-Prot
False negative sequences
10 sequences

ARCR_STAA3  (Q2FDM8), ARCR_STAA8  (Q2FUY1), ARCR_STAAC  (Q5HCR6), 
ARCR_STAAE  (A6QKC0), ARCR_STAAS  (Q6G643), ARCR_STAAT  (A8Z5D0), 
ARCR_STAAW  (Q8NUK9), ARCR_STAEQ  (Q5HKU6), ARCR_STAES  (Q8CML2), 
ARCR_STAHJ  (Q4L9J7)
» More

UniProtKB/Swiss-Prot
'Unknown' sequences
1 sequence

RIFK_THEKO  (Q5JGN9)

		
PDB
[Detailed view]
57 PDB

1CGP; 1G6N; 1HW5; 1I5Z; 1I6X; 1J59; 1LB2; 1O3Q; 1O3R; 1O3S; 1O3T; 1OMI; 1RUN; 1RUO; 1ZRC; 1ZRD; 1ZRE; 1ZRF; 2BEO; 2BGC; 2CGP; 2GZW; 2OZ6; 2WC2; 2XGX; 2XHK; 2XKO; 2XKP; 3D0S; 3FWE; 3H3U; 3HIF; 3I54; 3I59; 3IWZ; 3IYD; 3KCC; 3LA2; 3LA3; 3LA7; 3MZH; 3N4M; 3QOP; 3RDI; 3ROU; 3RPQ; 3RYP; 3RYR; 4BH9; 4BHP; 4FT8; 4HZF; 4I01; 4I02; 4I09; 4I0A; 4I0B
» More

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