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PROSITE entry PS51163


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General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS51163
Entry name [info] YRDC
Accession [info] PS51163
Entry type [info] MATRIX
Date [info] 01-NOV-2005 CREATED;
10-MAY-2017 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00883
Associated ProRule [info] PRU00518

Name and characterization of the entry

Description [info] YrdC-like domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=186;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=181;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=0.3022302; R2=0.0090932; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=7595.2270508; R2=23.2954540; PRIORITY=1; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=902; H_SCORE=28608; N_SCORE=8.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=682; H_SCORE=23483; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-6; D=-50; I=-50; B1=-500; E1=-500; MI=-105; MD=-105; IM=-105; DM=-105;
...
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_02 which contains 573'230 sequence entries.


Total number of hits 181 in 181 different sequences
Number of true positive hits 181 in 181 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Feature key [info] DOMAIN
Feature description [info] YrdC-like
Version [info] 5

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
181 sequences

HYPF2_CUPNH (O07451), HYPF_AZOCH  (Q43950), HYPF_AZOVI  (P40596), 
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PDB
[Detailed view]
10 PDB

1HRU; 1K7J; 1KK9; 2EQA; 2MX1; 3AJE; 4E1B; 6F87; 6F89; 6F8Y