Entry: PS51226

Forthcoming changes to the profile format
General information about the entry

Entry name [info] TEP1_N
Accession [info] PS51226
Entry type [info] MATRIX
Date [info] JUL-2006 (CREATED); OCT-2013 (DATA UPDATE); OCT-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC51226
Associated ProRule [info] PRU00575

Name and characterization of the entry

Description [info] TEP1 N-terminal repeat profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=30;
/DISJOINT: DEFINITION=PROTECT; N1=1; N2=30;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.8410422; R2=0.0093041; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=82.83168; R2=13.78218; TEXT='HScore';
/CUT_OFF: LEVEL=0; SCORE=770; N_SCORE=9.0; H_SCORE=9207; MODE=1; TEXT='R';
/CUT_OFF: LEVEL=-1; SCORE=410; N_SCORE=5.7; H_SCORE=5499; MODE=1; TEXT='R?';
/DEFAULT: M0=-8; D=-50; I=-50; B1=-200; E1=-200; MI=-105; MD=-105; IM=-105; DM=-105;
...
                A   B   C   D   E   F   G   H   I   K   L   M   N   P   Q   R   S   T   V   W   Y   Z
/I:         B1=0; BI=-105; BD=-105;
/M: SY='L'; M= -9,-24,-19,-28,-19,  5,-26,-13, 17,-21, 34, 31,-24,-25,-12,-16,-22, -4,  9,-21, -1,-16;
/M: SY='E'; M=-10, 10,-30, 20, 60,-30,-20,  0,-30, 10,-20,-20,  0,  0, 20,  0,  0,-10,-30,-30,-20, 40;
/M: SY='K'; M=-11, -1,-30, -1,  9,-29,-20, -9,-30, 48,-29,-10,  0,-11, 10, 34,-10,-10,-20,-20,-10,  9;
/M: SY='L'; M=-10,-29,-26,-30,-20,  1,-31,-23, 23,-27, 29, 14,-26, -9,-19,-23,-24,-10, 10,-21, -4,-21;
/M: SY='H'; M=-16, -2, 25, -4, -9,-22,-23, 43,-31,-16,-21,-10,  0,-26, -6,-12, -9,-15,-23,-38, -2,-10;
/M: SY='G'; M= -1, -9,-30, -9,-14,-31, 57,-16,-37,-16,-29,-17,  0,-19, -8,-16,  0,-19,-30,-20,-27,-11;
/M: SY='H'; M=-19, -3,-30, -3, -1,-15,-21, 78,-24, -8,-17,  0,  4,-20, 12,  0,-10,-17,-27,-20, 26,  1;
/M: SY='V'; M= -7,-24,-18,-27,-22, -4,-27,-17, 18, -9,  8, 19,-21,-25,-15, -2,-13, -5, 26,-25, -7,-20;
/M: SY='S'; M=  7, -3,-14, -1,  0,-21, -3,-11,-20,-10,-30,-20,  6,  4, -1,-11, 33, 16,-13,-39,-21, -1;
/M: SY='A'; M= 12,-12,-13,-15,-15,-14, -2,-21, -5,-14,-12, -8, -8,-17,-15,-16, 11,  9,  8,-29,-17,-15;
/M: SY='H'; M=-19,  4,-29,  2,  0,-20,-18, 90,-29, -9,-21, -2, 15,-20,  9,  0, -8,-18,-30,-31, 16,  0;
/M: SY='P'; M= -3,-13,-29, -6,  0,-26,-13,-16,-20,-10,-30,-20, -9, 53, -6,-16,  8,  1,-23,-34,-26, -6;
/M: SY='D'; M=-20, 50,-30, 70, 20,-40,-10,  0,-40,  0,-30,-30, 20,-10,  0,-10,  0,-10,-30,-40,-20, 10;
/M: SY='I'; M= -8,-30,-25,-38,-30,  0,-38,-30, 45,-28, 18, 18,-22,-22,-22,-28,-18, -8, 35,-22, -2,-30;
/M: SY='L'; M=-10,-30,-20,-30,-20, 10,-30,-20, 20,-30, 50, 20,-30,-30,-20,-20,-30,-10, 10,-20,  0,-20;
/M: SY='S'; M= 10,  0,-10,  0,  0,-20,  0,-10,-20,-10,-30,-20, 10,-10,  0,-10, 40, 20,-10,-40,-20,  0;
/M: SY='L'; M=-10,-30,-20,-30,-20, 10,-30,-20, 20,-30, 50, 20,-30,-30,-20,-20,-30,-10, 10,-20,  0,-20;
/M: SY='E'; M=-10,  7,-30, 14, 46,-30,-20, -3,-30, 21,-23,-17,  0, -3, 17,  8, -3,-10,-27,-27,-17, 32;
/M: SY='N'; M=-10, 40,-20, 20,  0,-20,  0, 10,-20,  0,-30,-20, 60,-20,  0,  0, 10,  0,-30,-40,-20,  0;
/M: SY='Q'; M=-14, -4,-30, -4, 12,-32,-20,  6,-24, 18,-20, -4,  0,-14, 40, 34, -4,-10,-26,-20,-10, 24;
/M: SY='C'; M=-10,-20,120,-30,-30,-20,-30,-30,-30,-30,-20,-20,-20,-40,-30,-30,-10,-10,-10,-50,-30,-30;
/M: SY='L'; M=-10,-30,-20,-30,-20, 10,-30,-20, 20,-30, 50, 20,-30,-30,-20,-20,-30,-10, 10,-20,  0,-20;
/M: SY='A'; M= 29, -6,-10,-16,-10,-16, -8,-20,-10,-10,-10,-10, -6,-10,-10,-16, 14, 21,  0,-24,-16,-10;
/M: SY='T'; M= -5,-11,-15,-20,-15, -4,-21,-13,  4,-12,  8, 19,-11,-16, -7,-11,  0, 21,  5,-25, -5,-11;
/M: SY='L'; M=-10,-30,-20,-30,-20, 10,-30,-20, 20,-30, 50, 20,-30,-30,-20,-20,-30,-10, 10,-20,  0,-20;
/M: SY='P'; M= -5,-15,-33, -8,  0,-28,-15,-18,-20,-10,-30,-20,-13, 67, -8,-18,  2, -3,-25,-32,-28, -8;
/M: SY='D'; M=-15, 39,-25, 52, 13,-33,-12, -5,-33, -2,-25,-25, 15,-10, -2,-10,  5,  4,-23,-38,-18,  5;
/M: SY='L'; M= -8,-30,-18,-30,-22,  8,-30,-22, 22,-28, 41, 18,-30,-30,-22,-20,-25, -8, 19,-22, -2,-22;
/M: SY='Q'; M=-10,  0,-30,  0, 15,-35,-20,  0,-25, 31,-25, -5,  0,-10, 34, 20, -5,-10,-25,-20,-10, 24;
/M: SY='P'; M= -2,-10,-24, -8, -3,-22,-15,-18,-17,-10,-24,-17, -7, 38, -8,-15, 10, 15,-17,-32,-22, -8;
/I:         E1=0; IE=-105; DE=-105;
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_11 which contains 547'085 sequence entries.


Total number of hits 12 in 3 different sequences
Number of true positive hits 12 in 3 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] PS_Langendijk_Genevaux
Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 4
Feature key [info] REPEAT
Feature description [info] TEP1 N-terminal
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
3 sequences

TEP1_HUMAN  (Q99973), TEP1_MOUSE  (P97499), TEP1_RAT    (O08653)

			
		

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