Entry: PS51244

Forthcoming changes to the profile format
General information about the entry

Entry name [info] LOLD
Accession [info] PS51244
Entry type [info] MATRIX
Date [info] AUG-2006 (CREATED); OCT-2013 (DATA UPDATE); OCT-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC51237

Name and characterization of the entry

Description [info] Lipoprotein release ATP-binding protein lolD family profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=32;
/DISJOINT: DEFINITION=PROTECT; N1=4; N2=29;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.0491379; R2=0.0126235; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=152.82353; R2=15.22391; TEXT='HScore';
/CUT_OFF: LEVEL=0; SCORE=99999; N_SCORE=9999.0; H_SCORE=16382; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=1066; N_SCORE=14.5; H_SCORE=16382; MODE=1; TEXT='?';
/CUT_OFF: LEVEL=-2; SCORE=432; N_SCORE=6.5; H_SCORE=6730; MODE=1; TEXT='??';
/DEFAULT: M0=-9; D=-50; I=-50; B1=-1000; E1=-1000; MI=-105; MD=-105; IM=-105; DM=-105;
...
                A   B   C   D   E   F   G   H   I   K   L   M   N   P   Q   R   S   T   V   W   Y   Z
/I:         B1=0; BI=-105; BD=-105;
/M: SY='Y'; M=-14,-26,-27,-30,-24, 13,-34, -9, 24,-23, 21, 13,-23,-26,-16,-20,-23,-10, 10, -2, 28,-24;
/M: SY='R'; M=-16, -6,-30, -6,  4,-24,-20, -4,-30, 37,-24,-10,  0,-16, 10, 55,-10,-10,-20,-20,-10,  4;
/M: SY='N'; M=-10, 40,-20, 20,  0,-20,  0, 10,-20,  0,-30,-20, 60,-20,  0,  0, 10,  0,-30,-40,-20,  0;
/M: SY='H'; M= -9,  0,-23,  0,  0,-20,-13, 61,-26,-10,-24, -7, 10,-16,  6, -4,  8, -6,-23,-34,  6,  0;
/M: SY='Z'; M=-14, -8,-26, -9, 13,  6,-24, -4,-16, -5, -9, -6, -7,-14, 12, -4, -7,-10,-19,-12,  2, 15;
/M: SY='L'; M=-10,-30,-24,-34,-24,  6,-34,-24, 31,-30, 39, 20,-26,-26,-20,-24,-26,-10, 17,-20,  0,-24;
/M: SY='G'; M=  0,-10,-30,-10,-20,-30, 70,-20,-40,-20,-30,-20,  0,-20,-20,-20,  0,-20,-30,-20,-30,-20;
/M: SY='F'; M=-16,-30,-24,-40,-30, 52,-34,-24, 18,-30, 14,  7,-20,-26,-33,-24,-20,-10, 11, -1, 19,-30;
/M: SY='I'; M= -6,-30,-23,-36,-30,  0,-36,-30, 43,-26, 16, 16,-24,-24,-24,-26,-16, -6, 37,-24, -4,-30;
/M: SY='F'; M=-20,-27,-23,-34,-27, 66,-30, -9,  0,-24,  7,  0,-20,-30,-32,-17,-20,-10, -3, 16, 44,-27;
/M: SY='Q'; M=-10,  0,-30,  0, 20,-40,-20, 10,-20, 10,-20,  0,  0,-10, 60, 10,  0,-10,-30,-20,-10, 40;
/M: SY='F'; M=-20,-30,-20,-40,-30, 80,-30,-20,  0,-30, 10,  0,-20,-30,-40,-20,-20,-10,  0, 10, 30,-30;
/M: SY='H'; M=-20, -7,-30, -7, -7, -2,-24, 72,-19,-10,-13,  0, -1,-24,  3, -4,-14,-16,-23, -9, 41, -7;
/M: SY='H'; M=-20, -7,-30, -7, -7, -2,-24, 71,-19,-10,-13,  0, -1,-24,  3, -4,-14,-16,-23, -8, 42, -7;
/M: SY='L'; M=-10,-30,-20,-30,-20, 10,-30,-20, 20,-30, 50, 20,-30,-30,-20,-20,-30,-10, 10,-20,  0,-20;
/M: SY='L'; M=-10,-26,-20,-30,-20,  6,-26,-13, 20,-23, 39, 35,-26,-26,-13,-16,-26,-10, 10,-20,  0,-16;
/M: SY='P'; M= -3,-13,-29, -6,  0,-26,-13,-16,-20,-10,-30,-20, -9, 54, -6,-16,  8,  1,-23,-34,-26, -6;
/M: SY='E'; M=-13, 21,-30, 34, 49,-33,-17,  0,-33,  7,-23,-23,  6, -3, 14, -3,  0,-10,-30,-33,-20, 32;
/M: SY='F'; M=-16,-30,-20,-36,-26, 55,-30,-20,  7,-30, 24,  7,-24,-30,-33,-20,-24,-10,  4, -1, 19,-26;
/M: SY='T'; M=  1, 11,-13,  2, -4,-16, -7, -8,-16, -7,-23,-16, 21,-13, -4, -7, 24, 25,-12,-36,-16, -4;
/M: SY='A'; M= 50,-10,-10,-20,-10,-20,  0,-20,-10,-10,-10,-10,-10,-10,-10,-20, 10,  0,  0,-20,-20,-10;
/M: SY='I'; M= -7,-30,-21,-34,-26,  4,-34,-26, 33,-27, 28, 17,-26,-26,-23,-24,-21, -7, 28,-23, -3,-26;
/M: SY='E'; M=-10, 10,-30, 20, 60,-30,-20,  0,-30, 10,-20,-20,  0,  0, 20,  0,  0,-10,-30,-30,-20, 40;
/M: SY='N'; M=-10, 40,-20, 20,  0,-20,  0, 10,-20,  0,-30,-20, 60,-20,  0,  0, 10,  0,-30,-40,-20,  0;
/M: SY='V'; M=  0,-30,-10,-30,-30,  0,-30,-30, 30,-20, 10, 10,-30,-30,-30,-20,-10,  0, 50,-30,-10,-30;
/M: SY='M'; M=  7,-21,-17,-27,-17, -2,-18,-13, 12,-17, 22, 26,-21,-21,-10,-16,-15, -7,  7,-20, -6,-14;
/M: SY='M'; M= 11,-20,-20,-30,-20, -7,-20,-18, 20,-17,  9, 21,-16,-16,-11,-21, -9, -6, 14,-20, -7,-17;
/M: SY='P'; M=-10,-20,-40,-10,  0,-30,-20,-20,-20,-10,-30,-20,-20, 90,-10,-20,-10,-10,-30,-30,-30,-10;
/M: SY='A'; M= 33,-16,-13,-23,-13,-12, -8,-20, -2,-16,  7, -2,-16,-16,-13,-20, -1, -3,  3,-20,-14,-13;
/M: SY='L'; M=-10,-26,-20,-30,-20,  6,-26,-13, 20,-23, 39, 34,-26,-26,-13,-16,-26,-10, 10,-20,  0,-16;
/M: SY='I'; M=-10,-30,-26,-36,-26,  4,-36,-26, 39,-30, 31, 20,-24,-24,-20,-26,-24,-10, 23,-20,  0,-26;
/M: SY='N'; M=-11,  8,-26,  1, -6,-23, 13, -2,-29,  5,-26,-16, 22,-20, -2, 19,  0, -9,-26,-27,-19, -6;
/I:         E1=0; IE=-105; DE=-105;
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Post-processing [info]

PROMOTED_BY PS50893

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_11 which contains 547'085 sequence entries.


Total number of hits 187 in 187 different sequences
Number of true positive hits 187 in 187 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] V_Lesaux
Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
187 sequences

LOLD1_CAUCR (Q9A9P4), LOLD1_CHLCH (Q3ATY5), LOLD1_CHLTE (Q8KF76), 
LOLD1_PELLD (Q3B2U2), LOLD1_RHOBA (Q7UX73), LOLD1_RHOPA (Q6N999), 
LOLD1_RHOPB (Q215F6), LOLD1_RHORT (Q2RU16), LOLD2_CAUCR (Q9A6Z7), 
LOLD2_CHLCH (Q3ARY3), LOLD2_CHLTE (Q8KCE8), LOLD2_PELLD (Q3B276), 
LOLD2_RHOBA (Q7UPK3), LOLD2_RHOPA (Q6N5P8), LOLD2_RHOPB (Q20ZS6), 
LOLD2_RHORT (Q2RQQ0), LOLD_ACIAD  (Q9EYM2), LOLD_AGRT5  (Q8UFV7), 
LOLD_ALCBS  (Q0VQQ0), LOLD_ALKEH  (Q0A8P9), LOLD_ANADE  (Q2IF17), 
LOLD_ANAMM  (Q5PBX2), LOLD_AQUAE  (O66646), LOLD_AROAE  (Q5NZT6), 
LOLD_BACFN  (Q5LI72), LOLD_BACFR  (Q64Z80), LOLD_BACTN  (Q8A1M1), 
LOLD_BARHE  (Q6G3A6), LOLD_BARQU  (Q6FZX3), LOLD_BDEBA  (Q6MMY0), 
LOLD_BLOFL  (Q7VR29), LOLD_BLOPB  (Q492R2), LOLD_BORA1  (Q2L219), 
LOLD_BORBR  (Q7WK40), LOLD_BORPA  (Q7W8T0), LOLD_BORPE  (Q7VZ31), 
LOLD_BRADU  (Q89KN0), LOLD_BRUA2  (Q2YNH6), LOLD_BRUAB  (Q57DS9), 
LOLD_BRUME  (Q8YGM0), LOLD_BRUSU  (Q8G195), LOLD_BUCAI  (P57383), 
LOLD_BUCAP  (Q44613), LOLD_BURCA  (Q1BHS6), LOLD_BURL3  (Q39EV3), 
LOLD_BURMA  (Q62J04), LOLD_BURPS  (Q63SP4), LOLD_BURTA  (Q2SXD1), 
LOLD_BURXL  (Q13X01), LOLD_CHESB  (Q11JI6), LOLD_CHRSD  (Q1QX72), 
LOLD_CHRVO  (Q7NTU0), LOLD_COLP3  (Q47YG8), LOLD_COXBU  (Q83CV2), 
LOLD_CUPPJ  (Q473H8), LOLD_CYTH3  (Q11SW8), LOLD_DECAR  (Q47C66), 
LOLD_DESAG  (Q312H8), LOLD_DESPS  (Q6AMR9), LOLD_DESVH  (Q729H7), 
LOLD_ECO57  (Q8X8E3), LOLD_ECOL5  (Q0TIV6), LOLD_ECOL6  (Q8FIM7), 
LOLD_ECOLI  (P75957), LOLD_ECOUT  (Q1RD37), LOLD_EHRCJ  (Q3YSY7), 
LOLD_EHRCR  (Q2GHT4), LOLD_EHRRG  (Q5FFC0), LOLD_EHRRW  (Q5HC57), 
LOLD_FRAT1  (Q14J44), LOLD_FRATH  (Q2A4V5), LOLD_FRATO  (Q0BN75), 
LOLD_FRATT  (Q5NHP2), LOLD_FUSNN  (Q8RFV0), LOLD_GEOMG  (Q39T41), 
LOLD_GEOSL  (Q74AT2), LOLD_GLUOX  (Q5FUV5), LOLD_GRABC  (Q0BSM2), 
LOLD_HAEDU  (Q7VMV4), LOLD_HAEI8  (Q4QKQ9), LOLD_HAEIN  (P45247), 
LOLD_HAHCH  (Q2SJK0), LOLD_HISS1  (Q0I3C2), LOLD_HYPNA  (Q0C1C3), 
LOLD_IDILO  (Q5QU46), LOLD_JANSC  (Q28M30), LOLD_KORVE  (Q1IKM7), 
LOLD_LEGPA  (Q5X2Z8), LOLD_LEGPH  (Q5ZT78), LOLD_LEGPL  (Q5WUF8), 
LOLD_LEPIC  (Q72PP0), LOLD_LEPIN  (Q8F6L8), LOLD_MAGSA  (Q2W450), 
LOLD_MANSM  (Q65TB7), LOLD_MARMM  (Q0APW8), LOLD_METCA  (Q604C1), 
LOLD_METFK  (Q1GZH6), LOLD_MYXXD  (Q1D382), LOLD_NEIG1  (Q5F8K2), 
LOLD_NEIMA  (P57030), LOLD_NEIMB  (P57031), LOLD_NEOSM  (Q2GE91), 
LOLD_NITEU  (Q82VL9), LOLD_NITHX  (Q1QLB0), LOLD_NITMU  (Q2Y624), 
LOLD_NITOC  (Q3J7S3), LOLD_NITWN  (Q3SRG8), LOLD_NOVAD  (Q2G7G7), 
LOLD_PARUW  (Q6MD10), LOLD_PASMU  (Q9CN78), LOLD_PECAS  (Q6D664), 
LOLD_PELCD  (Q3A558), LOLD_PHOLL  (Q7N3A6), LOLD_PHOPR  (Q6LPK2), 
LOLD_POLSJ  (Q12ES3), LOLD_PORGI  (Q7MU65), LOLD_PSE14  (Q48KI4), 
LOLD_PSEA6  (Q15TB1), LOLD_PSEAE  (Q9HZL7), LOLD_PSEF5  (Q4KFA2), 
LOLD_PSEHT  (Q3IL62), LOLD_PSEPF  (Q3K9F9), LOLD_PSEPK  (Q88KY4), 
LOLD_PSESM  (Q884I3), LOLD_PSEU2  (Q4ZV73), LOLD_PSYA2  (Q4FTM3), 
LOLD_PSYCK  (Q1QCN2), LOLD_RALME  (Q1LPJ9), LOLD_RALSO  (Q8Y0C6), 
LOLD_RHIEC  (Q2K9R2), LOLD_RHIL3  (Q1MIJ4), LOLD_RHILO  (Q98KS7), 
LOLD_RHIME  (Q92QN0), LOLD_RHOFT  (Q21TG3), LOLD_RHOP2  (Q2IWV8), 
LOLD_RHOPS  (Q135Z8), LOLD_RHOS4  (Q3IZT1), LOLD_RICBR  (Q1RK34), 
LOLD_RICCN  (Q92GP5), LOLD_RICFE  (Q4UMZ7), LOLD_RICPR  (Q9ZCM4), 
LOLD_RICTY  (Q68W38), LOLD_ROSDO  (Q168E3), LOLD_RUEPO  (Q5LUD0), 
LOLD_RUEST  (Q1GFI8), LOLD_SACD2  (Q21JQ9), LOLD_SALCH  (Q57QD7), 
LOLD_SALPA  (Q5PGR6), LOLD_SALRD  (Q2S3A3), LOLD_SALTI  (P61481), 
LOLD_SALTY  (P61482), LOLD_SHEDO  (Q12NL5), LOLD_SHEFN  (Q080S4), 
LOLD_SHEON  (Q8EEV5), LOLD_SHESM  (Q0HJG0), LOLD_SHESR  (Q0HVQ0), 
LOLD_SHIBS  (Q31ZH4), LOLD_SHIDS  (Q32EX7), LOLD_SHIFL  (Q83RS0), 
LOLD_SHISS  (Q3Z300), LOLD_SODGM  (Q2NU23), LOLD_SPHAL  (Q1GTY0), 
LOLD_SYNAS  (Q2LVM2), LOLD_THICR  (Q31GF5), LOLD_THIDA  (Q3SI20), 
LOLD_TREDE  (Q73L25), LOLD_TREPA  (O83590), LOLD_VIBCH  (P57066), 
LOLD_VIBF1  (Q5E0B3), LOLD_VIBPA  (Q87R20), LOLD_VIBVU  (Q8DAV6), 
LOLD_VIBVY  (Q7MJ01), LOLD_WIGBR  (Q8D3A0), LOLD_XANAC  (Q8PKT0), 
LOLD_XANC5  (Q3BTD3), LOLD_XANC8  (Q4UV71), LOLD_XANCP  (Q8P8V9), 
LOLD_XANOM  (Q2P3E1), LOLD_XANOR  (Q5H0G3), LOLD_XYLFA  (P57032), 
LOLD_XYLFT  (Q87EF4), LOLD_YERPA  (Q1C6Q8), LOLD_YERPE  (Q8ZFR4), 
LOLD_YERPN  (Q1CI46), LOLD_YERPS  (Q669P3), LOLD_ZYMMA  (F8DT93), 
LOLD_ZYMMO  (P0DJA1)
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