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	Entry: PS51244

General information about the entry
Entry name	LOLD
Accession number	PS51244
Entry type	MATRIX
Date	AUG-2006 (CREATED); AUG-2006 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation	PDOC51237
Name and characterization of the entry
Description	Lipoprotein release ATP-binding protein lolD family profile.
Matrix / Profile	/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=32; /DISJOINT: DEFINITION=PROTECT; N1=4; N2=29; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.0491379; R2=0.0126235; TEXT='-LogE'; /CUT_OFF: LEVEL=0; SCORE=99999; N_SCORE=9999.0; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=1066; N_SCORE=14.5; MODE=1; TEXT='?'; /CUT_OFF: LEVEL=-2; SCORE=432; N_SCORE=6.5; MODE=1; TEXT='??'; /DEFAULT: M0=-9; D=-50; I=-50; B1=-1000; E1=-1000; MI=-105; MD=-105; IM=-105; DM=-105; A B C D E F G H I K L M N P Q R S T V W Y Z /I: B1=0; BI=-105; BD=-105; /M: SY='Y'; M=-14,-26,-27,-30,-24, 13,-34, -9, 24,-23, 21, 13,-23,-26,-16,-20,-23,-10, 10, -2, 28,-24; /M: SY='R'; M=-16, -6,-30, -6, 4,-24,-20, -4,-30, 37,-24,-10, 0,-16, 10, 55,-10,-10,-20,-20,-10, 4; /M: SY='N'; M=-10, 40,-20, 20, 0,-20, 0, 10,-20, 0,-30,-20, 60,-20, 0, 0, 10, 0,-30,-40,-20, 0; /M: SY='H'; M= -9, 0,-23, 0, 0,-20,-13, 61,-26,-10,-24, -7, 10,-16, 6, -4, 8, -6,-23,-34, 6, 0; /M: SY='Z'; M=-14, -8,-26, -9, 13, 6,-24, -4,-16, -5, -9, -6, -7,-14, 12, -4, -7,-10,-19,-12, 2, 15; /M: SY='L'; M=-10,-30,-24,-34,-24, 6,-34,-24, 31,-30, 39, 20,-26,-26,-20,-24,-26,-10, 17,-20, 0,-24; /M: SY='G'; M= 0,-10,-30,-10,-20,-30, 70,-20,-40,-20,-30,-20, 0,-20,-20,-20, 0,-20,-30,-20,-30,-20; /M: SY='F'; M=-16,-30,-24,-40,-30, 52,-34,-24, 18,-30, 14, 7,-20,-26,-33,-24,-20,-10, 11, -1, 19,-30; /M: SY='I'; M= -6,-30,-23,-36,-30, 0,-36,-30, 43,-26, 16, 16,-24,-24,-24,-26,-16, -6, 37,-24, -4,-30; /M: SY='F'; M=-20,-27,-23,-34,-27, 66,-30, -9, 0,-24, 7, 0,-20,-30,-32,-17,-20,-10, -3, 16, 44,-27; /M: SY='Q'; M=-10, 0,-30, 0, 20,-40,-20, 10,-20, 10,-20, 0, 0,-10, 60, 10, 0,-10,-30,-20,-10, 40; /M: SY='F'; M=-20,-30,-20,-40,-30, 80,-30,-20, 0,-30, 10, 0,-20,-30,-40,-20,-20,-10, 0, 10, 30,-30; /M: SY='H'; M=-20, -7,-30, -7, -7, -2,-24, 72,-19,-10,-13, 0, -1,-24, 3, -4,-14,-16,-23, -9, 41, -7; /M: SY='H'; M=-20, -7,-30, -7, -7, -2,-24, 71,-19,-10,-13, 0, -1,-24, 3, -4,-14,-16,-23, -8, 42, -7; /M: SY='L'; M=-10,-30,-20,-30,-20, 10,-30,-20, 20,-30, 50, 20,-30,-30,-20,-20,-30,-10, 10,-20, 0,-20; /M: SY='L'; M=-10,-26,-20,-30,-20, 6,-26,-13, 20,-23, 39, 35,-26,-26,-13,-16,-26,-10, 10,-20, 0,-16; /M: SY='P'; M= -3,-13,-29, -6, 0,-26,-13,-16,-20,-10,-30,-20, -9, 54, -6,-16, 8, 1,-23,-34,-26, -6; /M: SY='E'; M=-13, 21,-30, 34, 49,-33,-17, 0,-33, 7,-23,-23, 6, -3, 14, -3, 0,-10,-30,-33,-20, 32; /M: SY='F'; M=-16,-30,-20,-36,-26, 55,-30,-20, 7,-30, 24, 7,-24,-30,-33,-20,-24,-10, 4, -1, 19,-26; /M: SY='T'; M= 1, 11,-13, 2, -4,-16, -7, -8,-16, -7,-23,-16, 21,-13, -4, -7, 24, 25,-12,-36,-16, -4; /M: SY='A'; M= 50,-10,-10,-20,-10,-20, 0,-20,-10,-10,-10,-10,-10,-10,-10,-20, 10, 0, 0,-20,-20,-10; /M: SY='I'; M= -7,-30,-21,-34,-26, 4,-34,-26, 33,-27, 28, 17,-26,-26,-23,-24,-21, -7, 28,-23, -3,-26; /M: SY='E'; M=-10, 10,-30, 20, 60,-30,-20, 0,-30, 10,-20,-20, 0, 0, 20, 0, 0,-10,-30,-30,-20, 40; /M: SY='N'; M=-10, 40,-20, 20, 0,-20, 0, 10,-20, 0,-30,-20, 60,-20, 0, 0, 10, 0,-30,-40,-20, 0; /M: SY='V'; M= 0,-30,-10,-30,-30, 0,-30,-30, 30,-20, 10, 10,-30,-30,-30,-20,-10, 0, 50,-30,-10,-30; /M: SY='M'; M= 7,-21,-17,-27,-17, -2,-18,-13, 12,-17, 22, 26,-21,-21,-10,-16,-15, -7, 7,-20, -6,-14; /M: SY='M'; M= 11,-20,-20,-30,-20, -7,-20,-18, 20,-17, 9, 21,-16,-16,-11,-21, -9, -6, 14,-20, -7,-17; /M: SY='P'; M=-10,-20,-40,-10, 0,-30,-20,-20,-20,-10,-30,-20,-20, 90,-10,-20,-10,-10,-30,-30,-30,-10; /M: SY='A'; M= 33,-16,-13,-23,-13,-12, -8,-20, -2,-16, 7, -2,-16,-16,-13,-20, -1, -3, 3,-20,-14,-13; /M: SY='L'; M=-10,-26,-20,-30,-20, 6,-26,-13, 20,-23, 39, 34,-26,-26,-13,-16,-26,-10, 10,-20, 0,-16; /M: SY='I'; M=-10,-30,-26,-36,-26, 4,-36,-26, 39,-30, 31, 20,-24,-24,-20,-26,-24,-10, 23,-20, 0,-26; /M: SY='N'; M=-11, 8,-26, 1, -6,-23, 13, -2,-29, 5,-26,-16, 22,-20, -2, 19, 0, -9,-26,-27,-19, -6; /I: E1=0; IE=-105; DE=-105;
Post-processing
PROMOTED_BY: PS50893;
Numerical results
UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052. Total number of hits in UniProtKB/Swiss-Prot: 187 hits in 187 different sequences Number of hits on proteins that are known to belong to the set under consideration: 187 hits in 187 different sequences Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences Number of false hits (on unrelated proteins): 0 hits in 0 different sequences Number of known missed hits: 0 Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0 Precision (true hits / (true hits + false positives)): 100.00 % Recall (true hits / (true hits + false negatives)): 100.00 %
Comments
MATRIX_TYPE: protein_domain Scaling database: UniProtKB/Swiss-Prot: reversed Matrix author: V_Lesaux Taxonomic range: Prokaryotes (Bacteria) Maximum known number of repetitions of the pattern in a single protein: 1 VERSION: 1
Cross-references
UniProtKB/Swiss-Prot	True positive hits: LOLD1_CAUCR (Q9A9P4), LOLD1_CHLCH (Q3ATY5), LOLD1_CHLTE (Q8KF76), LOLD1_PELLD (Q3B2U2), LOLD1_RHOBA (Q7UX73), LOLD1_RHOPA (Q6N999), LOLD1_RHOPB (Q215F6), LOLD1_RHORT (Q2RU16), LOLD2_CAUCR (Q9A6Z7), LOLD2_CHLCH (Q3ARY3), LOLD2_CHLTE (Q8KCE8), LOLD2_PELLD (Q3B276), LOLD2_RHOBA (Q7UPK3), LOLD2_RHOPA (Q6N5P8), LOLD2_RHOPB (Q20ZS6), LOLD2_RHORT (Q2RQQ0), LOLD_ACIAD (Q9EYM2), LOLD_AGRT5 (Q8UFV7), LOLD_ALCBS (Q0VQQ0), LOLD_ALHEH (Q0A8P9), LOLD_ANADE (Q2IF17), LOLD_ANAMM (Q5PBX2), LOLD_AQUAE (O66646), LOLD_AROAE (Q5NZT6), LOLD_BACFN (Q5LI72), LOLD_BACFR (Q64Z80), LOLD_BACTN (Q8A1M1), LOLD_BARHE (Q6G3A6), LOLD_BARQU (Q6FZX3), LOLD_BDEBA (Q6MMY0), LOLD_BLOFL (Q7VR29), LOLD_BLOPB (Q492R2), LOLD_BORA1 (Q2L219), LOLD_BORBR (Q7WK40), LOLD_BORPA (Q7W8T0), LOLD_BORPE (Q7VZ31), LOLD_BRAJA (Q89KN0), LOLD_BRUA2 (Q2YNH6), LOLD_BRUAB (Q57DS9), LOLD_BRUME (Q8YGM0), LOLD_BRUSU (Q8G195), LOLD_BUCAI (P57383), LOLD_BUCAP (Q44613), LOLD_BURCA (Q1BHS6), LOLD_BURMA (Q62J04), LOLD_BURPS (Q63SP4), LOLD_BURS3 (Q39EV3), LOLD_BURTA (Q2SXD1), LOLD_BURXL (Q13X01), LOLD_CHRSD (Q1QX72), LOLD_CHRVO (Q7NTU0), LOLD_COLP3 (Q47YG8), LOLD_COXBU (Q83CV2), LOLD_CUPPJ (Q473H8), LOLD_CYTH3 (Q11SW8), LOLD_DECAR (Q47C66), LOLD_DESDG (Q312H8), LOLD_DESPS (Q6AMR9), LOLD_DESVH (Q729H7), LOLD_ECO57 (Q8X8E3), LOLD_ECOL5 (Q0TIV6), LOLD_ECOL6 (Q8FIM7), LOLD_ECOLI (P75957), LOLD_ECOUT (Q1RD37), LOLD_EHRCJ (Q3YSY7), LOLD_EHRCR (Q2GHT4), LOLD_EHRRG (Q5FFC0), LOLD_EHRRW (Q5HC57), LOLD_ERWCT (Q6D664), LOLD_FRAT1 (Q14J44), LOLD_FRATH (Q2A4V5), LOLD_FRATO (Q0BN75), LOLD_FRATT (Q5NHP2), LOLD_FUSNN (Q8RFV0), LOLD_GEOMG (Q39T41), LOLD_GEOSL (Q74AT2), LOLD_GLUOX (Q5FUV5), LOLD_GRABC (Q0BSM2), LOLD_HAEDU (Q7VMV4), LOLD_HAEI8 (Q4QKQ9), LOLD_HAEIN (P45247), LOLD_HAES1 (Q0I3C2), LOLD_HAHCH (Q2SJK0), LOLD_HYPNA (Q0C1C3), LOLD_IDILO (Q5QU46), LOLD_JANSC (Q28M30), LOLD_KORVE (Q1IKM7), LOLD_LEGPA (Q5X2Z8), LOLD_LEGPH (Q5ZT78), LOLD_LEGPL (Q5WUF8), LOLD_LEPIC (Q72PP0), LOLD_LEPIN (Q8F6L8), LOLD_MAGSA (Q2W450), LOLD_MANSM (Q65TB7), LOLD_MARMM (Q0APW8), LOLD_MESSB (Q11JI6), LOLD_METCA (Q604C1), LOLD_METFK (Q1GZH6), LOLD_MYXXD (Q1D382), LOLD_NEIG1 (Q5F8K2), LOLD_NEIMA (P57030), LOLD_NEIMB (P57031), LOLD_NEOSM (Q2GE91), LOLD_NITEU (Q82VL9), LOLD_NITHX (Q1QLB0), LOLD_NITMU (Q2Y624), LOLD_NITOC (Q3J7S3), LOLD_NITWN (Q3SRG8), LOLD_NOVAD (Q2G7G7), LOLD_PARUW (Q6MD10), LOLD_PASMU (Q9CN78), LOLD_PELCD (Q3A558), LOLD_PHOLL (Q7N3A6), LOLD_PHOPR (Q6LPK2), LOLD_POLSJ (Q12ES3), LOLD_PORGI (Q7MU65), LOLD_PSE14 (Q48KI4), LOLD_PSEA6 (Q15TB1), LOLD_PSEAE (Q9HZL7), LOLD_PSEF5 (Q4KFA2), LOLD_PSEHT (Q3IL62), LOLD_PSEPF (Q3K9F9), LOLD_PSEPK (Q88KY4), LOLD_PSESM (Q884I3), LOLD_PSEU2 (Q4ZV73), LOLD_PSYA2 (Q4FTM3), LOLD_PSYCK (Q1QCN2), LOLD_RALME (Q1LPJ9), LOLD_RALSO (Q8Y0C6), LOLD_RHIEC (Q2K9R2), LOLD_RHIL3 (Q1MIJ4), LOLD_RHILO (Q98KS7), LOLD_RHIME (Q92QN0), LOLD_RHOFD (Q21TG3), LOLD_RHOP2 (Q2IWV8), LOLD_RHOPS (Q135Z8), LOLD_RHOS4 (Q3IZT1), LOLD_RICBR (Q1RK34), LOLD_RICCN (Q92GP5), LOLD_RICFE (Q4UMZ7), LOLD_RICPR (Q9ZCM4), LOLD_RICTY (Q68W38), LOLD_ROSDO (Q168E3), LOLD_RUEPO (Q5LUD0), LOLD_RUEST (Q1GFI8), LOLD_SACD2 (Q21JQ9), LOLD_SALCH (Q57QD7), LOLD_SALPA (Q5PGR6), LOLD_SALRD (Q2S3A3), LOLD_SALTI (P61481), LOLD_SALTY (P61482), LOLD_SHEDO (Q12NL5), LOLD_SHEFN (Q080S4), LOLD_SHEON (Q8EEV5), LOLD_SHESM (Q0HJG0), LOLD_SHESR (Q0HVQ0), LOLD_SHIBS (Q31ZH4), LOLD_SHIDS (Q32EX7), LOLD_SHIFL (Q83RS0), LOLD_SHISS (Q3Z300), LOLD_SODGM (Q2NU23), LOLD_SPHAL (Q1GTY0), LOLD_SYNAS (Q2LVM2), LOLD_THICR (Q31GF5), LOLD_THIDA (Q3SI20), LOLD_TREDE (Q73L25), LOLD_TREPA (O83590), LOLD_VIBCH (P57066), LOLD_VIBF1 (Q5E0B3), LOLD_VIBPA (Q87R20), LOLD_VIBVU (Q8DAV6), LOLD_VIBVY (Q7MJ01), LOLD_WIGBR (Q8D3A0), LOLD_XANAC (Q8PKT0), LOLD_XANC5 (Q3BTD3), LOLD_XANC8 (Q4UV71), LOLD_XANCP (Q8P8V9), LOLD_XANOM (Q2P3E1), LOLD_XANOR (Q5H0G3), LOLD_XYLFA (P57032), LOLD_XYLFT (Q87EF4), LOLD_YERPA (Q1C6Q8), LOLD_YERPE (Q8ZFR4), LOLD_YERPN (Q1CI46), LOLD_YERPS (Q669P3), LOLD_ZYMMA (F8DT93), LOLD_ZYMMO (P0DJA1) Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits: [Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format] Retrieve the sequence logo from the alignment

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