Entry: PS51247

Forthcoming changes to the profile format
General information about the entry

Entry name [info] NIKD
Accession [info] PS51247
Entry type [info] MATRIX
Date [info] AUG-2006 (CREATED); OCT-2013 (DATA UPDATE); JUN-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC51237

Name and characterization of the entry

Description [info] Nickel import ATP-binding protein nikD.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=52;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=47;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.6773194; R2=0.0113544; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=-724.87380; R2=25.64746; TEXT='HScore';
/CUT_OFF: LEVEL=0; SCORE=99999; N_SCORE=9999.0; H_SCORE=40670; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=1614; N_SCORE=20.0; H_SCORE=40670; MODE=1; TEXT='?';
/CUT_OFF: LEVEL=-2; SCORE=425; N_SCORE=6.5; H_SCORE=10175; MODE=1; TEXT='??';
/DEFAULT: M0=-8; D=-50; I=-50; B1=-1000; E1=-1000; MI=-105; MD=-105; IM=-105; DM=-105;
...
                A   B   C   D   E   F   G   H   I   K   L   M   N   P   Q   R   S   T   V   W   Y   Z
/I:         B1=0; BI=-105; BD=-105;
/M: SY='M'; M=-10,-20,-20,-30,-20,  0,-20,  0, 20,-10, 20, 60,-20,-20,  0,-10,-20,-10, 10,-20,  0,-10;
/M: SY='G'; M=  0,-10,-30,-10,-20,-30, 70,-20,-40,-20,-30,-20,  0,-20,-20,-20,  0,-20,-30,-20,-30,-20;
/M: SY='V'; M=  0,-30,-10,-30,-30,  0,-30,-30, 30,-20, 10, 10,-30,-30,-30,-20,-10,  0, 50,-30,-10,-30;
/M: SY='V'; M=  0,-30,-10,-30,-30,  0,-30,-30, 30,-20, 10, 10,-30,-30,-30,-20,-10,  0, 50,-30,-10,-30;
/M: SY='A'; M= 50,-10,-10,-20,-10,-20,  0,-20,-10,-10,-10,-10,-10,-10,-10,-20, 10,  0,  0,-20,-20,-10;
/M: SY='R'; M=-20,-10,-30,-10,  0,-20,-20,  0,-30, 30,-20,-10,  0,-20, 10, 70,-10,-10,-20,-20,-10,  0;
/M: SY='C'; M=-10,-25, 47,-30,-25, -4,-30,-25, -4,-30, 17,  1,-25,-35,-25,-25,-20,-10,  0,-34,-14,-25;
/M: SY='A'; M= 50,-10,-10,-20,-10,-20,  0,-20,-10,-10,-10,-10,-10,-10,-10,-20, 10,  0,  0,-20,-20,-10;
/M: SY='D'; M=-20, 50,-30, 70, 20,-40,-10,  0,-40,  0,-30,-30, 20,-10,  0,-10,  0,-10,-30,-40,-20, 10;
/M: SY='D'; M=-15, 26,-30, 37, 20,-40,-15,  5,-31,  5,-25,-16, 10,-10, 28,  0,  0,-10,-30,-31,-15, 24;
/M: SY='V'; M=  0,-30,-10,-30,-30,  0,-30,-30, 30,-20, 10, 10,-30,-30,-30,-20,-10,  0, 50,-30,-10,-30;
/M: SY='A'; M= 50,-10,-10,-20,-10,-20,  0,-20,-10,-10,-10,-10,-10,-10,-10,-20, 10,  0,  0,-20,-20,-10;
/M: SY='V'; M=  0,-30,-10,-30,-30,  0,-30,-30, 30,-20, 10, 10,-30,-30,-30,-20,-10,  0, 50,-30,-10,-30;
/M: SY='M'; M=-10,-20,-20,-30,-20,  0,-20,  0, 20,-10, 20, 60,-20,-20,  0,-10,-20,-10, 10,-20,  0,-10;
/M: SY='E'; M=  0,  5,-19,  9, 28,-25, -9, -5,-25,  0,-25,-20,  5, -5,  9, -5, 21,  6,-19,-35,-20, 19;
/M: SY='D'; M= 13, 21,-20, 27,  6,-31, -5, -9,-26, -5,-20,-20,  6,-10, -5,-15,  5, -5,-16,-31,-20,  0;
/M: SY='G'; M=  0,-10,-30,-10,-20,-30, 70,-20,-40,-20,-30,-20,  0,-20,-20,-20,  0,-20,-30,-20,-30,-20;
/M: SY='R'; M=-15, -5,-30, -5,  5,-25,-20, -5,-30, 40,-25,-10,  0,-15, 10, 49,-10,-10,-20,-20,-10,  5;
/M: SY='I'; M=-10,-30,-30,-40,-30,  0,-40,-30, 50,-30, 20, 20,-20,-20,-20,-30,-20,-10, 30,-20,  0,-30;
/M: SY='V'; M=  0,-30,-10,-30,-30,  0,-30,-30, 30,-20, 10, 10,-30,-30,-30,-20,-10,  0, 50,-30,-10,-30;
/M: SY='E'; M=-10, 10,-30, 20, 60,-30,-20,  0,-30, 10,-20,-20,  0,  0, 20,  0,  0,-10,-30,-30,-20, 40;
/M: SY='C'; M=-10, -9, 41,-14, -4,-31,-25, -9,-25, -9,-20, -9, -9,-24, 17, -9, -5,-10,-20,-34,-19,  7;
/M: SY='G'; M= -5, -5,-30, -5, -1,-35, 27, -6,-31, -6,-25,-10,  0,-15, 18, -6,  0,-15,-30,-20,-20,  9;
/M: SY='P'; M=-15, 17,-35, 32, 10,-35,-15, -9,-31, -5,-30,-25,  1, 38, -5,-15, -5,-10,-30,-35,-25,  0;
/M: SY='V'; M= 24,-20,-10,-25,-20, -9,-16,-25, 11,-15,  0,  0,-20,-20,-20,-20,  0,  0, 26,-25,-15,-20;
/M: SY='H'; M=-15,  5,-30, 10, 31,-25,-20, 47,-30,  0,-20,-10,  5, -9, 15,  0, -5,-15,-30,-30, -1, 21;
/M: SY='E'; M= -5,  5,-19,  4, 23,-19,-20,-10,-19,  0,-15,-15,  0, -5,  4, -5, 10, 21,-14,-30,-15, 14;
/M: SY='L'; M=-10,-30,-20,-30,-20, 10,-30,-20, 20,-30, 50, 20,-30,-30,-20,-20,-30,-10, 10,-20,  0,-20;
/M: SY='F'; M=-20,-30,-20,-40,-30, 80,-30,-20,  0,-30, 10,  0,-20,-30,-40,-20,-20,-10,  0, 10, 30,-30;
/M: SY='N'; M=-10, 21,-25, 10,  9,-29, -9, 10,-20,  5,-25,-10, 31,-15, 28,  5,  5, -5,-30,-31,-15, 19;
/M: SY='R'; M= 17,-10,-19,-15, -5,-20, -9,-10,-19,  9,-15,-10, -5,-15,  0, 23,  0, -5, -9,-20,-15, -5;
/M: SY='P'; M=-10,-20,-40,-10,  0,-30,-20,-20,-20,-10,-30,-20,-20, 90,-10,-20,-10,-10,-30,-30,-30,-10;
/M: SY='K'; M= 19, -5,-20, -9,  0,-25,-10,-15,-20, 21,-20,-10, -5,-10,  0,  6,  0, -5,-10,-20,-15,  0;
/M: SY='H'; M= -6,  0,-20,  0,  0,-20,-10, 48,-25,-10,-25, -9, 10,-15,  5, -5, 14, -1,-20,-35,  1,  0;
/M: SY='A'; M= 50,-10,-10,-20,-10,-20,  0,-20,-10,-10,-10,-10,-10,-10,-10,-20, 10,  0,  0,-20,-20,-10;
/M: SY='V'; M=  0,-16,-10,-20,-20, -5,-25,-25, 11,-15,  0,  0,-16,-20,-20,-15,  4, 24, 26,-30,-10,-20;
/M: SY='T'; M= 24, -5,-10,-15,-10,-15,-10,-20,-10,-10,-10,-10, -5,-10,-10,-15, 15, 26,  0,-25,-15,-10;
/M: SY='R'; M=-20,-10,-30,-10,  0,-20,-20,  0,-30, 30,-20,-10,  0,-20, 10, 70,-10,-10,-20,-20,-10,  0;
/M: SY='T'; M=  5,  0,-10, -5, -5,-15, -9,-15,-15,-10,-20,-15,  5,-10, -5,-10, 31, 34, -5,-35,-15, -5;
/M: SY='L'; M=-10,-30,-20,-30,-20, 10,-30,-20, 20,-30, 50, 20,-30,-30,-20,-20,-30,-10, 10,-20,  0,-20;
/M: SY='V'; M= -5,-30,-15,-30,-25,  5,-30,-25, 25,-25, 29, 15,-30,-30,-25,-20,-19, -5, 31,-25, -5,-25;
/M: SY='H'; M= -4,  0,-19,  0,  0,-20, -9, 42,-25,-10,-25,-10, 10,-15,  5, -5, 16,  1,-19,-35, -1,  0;
/M: SY='A'; M= 50,-10,-10,-20,-10,-20,  0,-20,-10,-10,-10,-10,-10,-10,-10,-20, 10,  0,  0,-20,-20,-10;
/M: SY='H'; M=-20,  0,-30,  0,  0,-20,-20,100,-30,-10,-20,  0, 10,-20, 10,  0,-10,-20,-30,-30, 20,  0;
/M: SY='Q'; M=-10,-16,-25,-16, -1,-14,-25, -6,  1,-11, 17, 10,-16,-20, 18, -6,-16,-10, -9,-20, -5,  9;
/M: SY='A'; M= 26,-19,-10,-25,-19,-10,-14,-25,  9,-15,  0,  0,-19,-19,-19,-20,  0,  0, 24,-25,-15,-19;
/M: SY='L'; M=-10,-30,-20,-30,-20, 10,-30,-20, 20,-30, 50, 20,-30,-30,-20,-20,-30,-10, 10,-20,  0,-20;
/M: SY='C'; M=-15,-20, 41,-25,-25,  6,-30, -4,-14,-19, -9, -9,-20,-35,-19,-19,-15,-10,-10, -8, 28,-25;
/M: SY='G'; M= -9,-10,-30,-10,-10,-25, 27,-10,-35,  4,-25,-15,  0,-20, -6, 23, -5,-15,-25,-20,-20,-10;
/M: SY='M'; M=  0,-10,-15,-16,-10, -9,-10, -5,  1,-10, -4, 22, -6,-15,  0,-10,  9,  4,  0,-29, -9, -5;
/M: SY='E'; M=-10,  5,-30, 10, 41,-35,-20,  5,-25, 10,-20,-10,  0, -5, 39,  5,  0,-10,-30,-25,-15, 40;
/M: SY='P'; M=-10,-25,-29,-20,-10, -9,-25,-20,  1,-20, 12,  1,-25, 27,-15,-20,-20,-10, -9,-25,-14,-15;
/I:         E1=0; IE=-105; DE=-105;
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Post-processing [info]

PROMOTED_BY PS50893

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_07 which contains 546'000 sequence entries.


Total number of hits 16 in 16 different sequences
Number of true positive hits 16 in 16 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] V_Lesaux
Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
16 sequences

NIKD_BRUA2  (Q2YL70), NIKD_BRUAB  (Q578S8), NIKD_BRUME  (Q8YCN8), 
NIKD_BRUSU  (Q8FVM9), NIKD_ECO57  (Q8X5U1), NIKD_ECOL5  (Q0TBX9), 
NIKD_ECOL6  (Q8FCN0), NIKD_ECOLI  (P33593), NIKD_ECOUT  (Q1R5D9), 
NIKD_PSEPK  (Q88HL1), NIKD_RHORT  (Q2RS21), NIKD_SHIBS  (Q31VE7), 
NIKD_SHIDS  (Q32AQ2), NIKD_SHIF8  (Q0SZJ4), NIKD_SHIFL  (Q83J78), 
NIKD_SHISS  (Q3YW49)
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