PROSITE entry PS51256
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General information about the entry
| Entry name [info] | GS |
| Accession [info] | PS51256 |
| Entry type [info] | MATRIX |
| Date [info] |
01-OCT-2006 CREATED;
10-MAY-2017 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC51256 |
| Associated ProRule [info] | PRU00585 |
Name and characterization of the entry
| Description [info] | GS domain profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=30; /DISJOINT: DEFINITION=PROTECT; N1=4; N2=27; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.6356133; R2=0.0071500; TEXT='NScore'; /NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=2852.9260254; R2=0.4629630; PRIORITY=1; TEXT='Heuristic 5.0%'; /CUT_OFF: LEVEL=0; SCORE=961; H_SCORE=3298; N_SCORE=8.5; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=681; H_SCORE=3168; N_SCORE=6.5; MODE=1; TEXT='?'; /DEFAULT: M0=-36; D=-20; I=-20; B1=-200; E1=-200; MI=-105; MD=-105; IM=-105; DM=-105; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; BI=-105; BD=-105; /M: SY='P'; M=-54,-72,-53, -3,-75, 13,-59,-73, 30,-77,-68, 41, 51,-30,-40, 45, 42,-69,-79,-21; /M: SY='T'; M=-34,-46,-53, 27,-13, -7, 23,-24,-23,-47, 1, 29,-41,-24,-29, 7, 74,-59,-78, 5; /M: SY='M'; M=-61,-72,-80,-75,-46,-35,-26, 43,-73, 47, 68,-73,-77,-67,-72, -4,-40, 23, 42, 19; /M: SY='Q'; M=-31,-76, 31, 33,-40, 0, 31,-70, 31,-68, 42,-20,-15, 50, -5, 16,-57,-31,-79,-63; /M: SY='D'; M=-33,-80, 87, 49,-85,-22,-56,-81,-11,-80,-75,-38, 35, 11,-58, -8,-19,-78,-88,-71; /M: SY='M'; M=-21,-71,-37,-69, 1,-73,-61, 33,-16, 44, 68, -5,-75,-62,-66, 25,-56,-43,-66, 33; /M: SY='I'; M= -1,-73,-75,-69, 15,-75,-69, 50, -5, 26, 25,-68, 10,-64, 1, -2, -2, -6, 41,-14; /M: SY='D'; M= -7,-76, 66, 42,-37,-59,-44,-65,-18,-44, 25,-31, 3, 13,-59, 6,-56, -6,-73, 42; /M: SY='M'; M=-38,-74, 55, 27,-64,-14, 39,-41,-59, 16, 78,-55,-69, 2,-63, 1,-58, 1,-82,-59; /M: SY='M'; M= -9,-69, 20,-63, 21,-69,-14,-12,-41, 30, 45,-59,-71,-61,-67, 35, 34,-15,-70, 23; /I: I=-5; MI=0; MD=-25; IM=0; DM=-25; /M: SY='C'; M= -9, 64, 0, 36,-72,-68,-64, 14,-56,-63,-60,-54,-16, 43,-62, 26, 51,-11,-83,-68; /M: SY='T'; M=-33,-12, 33,-56,-72, 16,-63,-69,-58,-72,-67,-45,-63,-57,-65, 61, 78,-62,-85,-37; /M: SY='S'; M=-44, 3,-58,-60,-75, 30,-62,-74,-59,-77,-70,-46,-64,-53,-64, 95, 24,-67,-82,-68; /M: SY='G'; M=-47,-74,-63,-72,-81, 95,-69,-87,-67,-84,-74,-49,-67,-63,-74, 39,-60,-80,-75,-75; /M: SY='S'; M=-42, 10,-57,-59,-75, 17,-60,-75,-59,-78,-71,-45,-65,-51,-63,102,-39,-68,-82,-68; /M: SY='G'; M=-48,-74,-63,-73,-81, 96,-69,-86,-67,-84,-74,-49,-67,-64,-74, 21, -5,-80,-75,-76; /M: SY='S'; M= 17,-64,-58,-58,-72,-52,-60,-68,-58,-69, 32,-47,-64,-51,-62, 96, 21,-61,-81,-65; /M: SY='G'; M=-49,-77,-64,-76,-83,103,-71,-91,-70,-86,-75,-50,-68,-67,-77,-49,-68,-84,-74,-78; /M: SY='L'; M=-66,-73,-73,-64, -5,-78,-63,-43, 19, 69, 31, -4, 34, 21,-61,-68,-61,-49,-71,-56; /M: SY='P'; M= 20,-83,-66,-56,-83,-65,-70,-71,-62,-80,-68,-69,118,-65,-73,-57, 7,-72,-79,-80; /M: SY='L'; M= -6,-68,-76,-72, 41,-77,-64,-41,-72, 67,-39,-71,-78,-69,-71,-19, 33,-46,-62, 34; /M: SY='L'; M=-67,-69,-85,-77, 2,-86,-68,-33,-78, 88, 23,-83,-84,-71,-74,-77,-63,-40,-69,-51; /M: SY='V'; M=-54,-68,-75,-73,-56,-79, 33, 23,-71,-19,-44, -9,-76,-71,-73,-13, 1, 87,-87,-59; /M: SY='Q'; M=-59,-83,-54,-35,-87,-67,-16,-76, 26,-72,-59,-49,-66,123,-38, -9,-60,-77,-73,-61; /M: SY='R'; M=-46,-82,-64,-51,-73,-76,-53,-76,-27,-15,-60,-57,-75, 25,110,-61,-65,-72,-75,-62; /M: SY='T'; M=-50,-62,-57,-60,-69,-64,-66,-61,-57,-66,-62,-46,-60,-59,-65, 43,106,-53,-87,-66; /M: SY='I'; M=-61,-73,-85,-81, 7,-87,-82, 87,-77,-14, 26,-77,-76,-75,-79,-71,-57, 53,-74,-54; /M: SY='A'; M= 88,-64,-66,-60,-76, 0,-67,-68,-58,-69,-63,-59,-67,-57, 11, 14,-52,-56,-76,-71; /M: SY='R'; M=-20,-80,-60,-49,-78, -5,-53,-81, 30,-75,-64, 3,-72, 39, 97,-56,-63,-75,-75,-64; /M: SY='Q'; M=-60,-79, 40,-38,-84,-66, -8,-75,-43,-72,-62, 5,-66,110, 4,-31, 31,-74,-79,-63; /I: E1=0; IE=-105; DE=-105;» more |
Numerical results [info]
| Total number of hits | 28 in 28 different sequences |
| Number of true positive hits | 28 in 28 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 1 |
| Matrix type [info] | protein_domain |
| Scaling database [info] | reversed |
| Author [info] | CJA_Sigrist |
| Feature key [info] | DOMAIN |
| Feature description [info] | GS |
| Version [info] | 5 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
28 sequences
ACV1B_HUMAN (P36896), ACV1B_MOUSE (Q61271), ACV1B_RAT (P80202), ACV1C_HUMAN (Q8NER5), ACV1C_MOUSE (Q8K348), ACV1C_RAT (P70539), ACVL1_HUMAN (P37023), ACVL1_MOUSE (Q61288), ACVL1_PONAB (Q5RAN0), ACVL1_RAT (P80203), ACVR1_BOVIN (Q28041), ACVR1_CHICK (Q90ZK6), ACVR1_HUMAN (Q04771), ACVR1_MOUSE (P37172), ACVR1_RAT (P80201), BMR1A_HUMAN (P36894), BMR1A_MOUSE (P36895), BMR1A_RAT (Q78EA7), BMR1B_CHICK (Q05438), BMR1B_HUMAN (O00238), BMR1B_MOUSE (P36898), DAF1_CAEEL (P20792), SMA6_CAEEL (Q09488), TGFR1_BOVIN (O46680), TGFR1_HUMAN (P36897), TGFR1_MOUSE (Q64729), TGFR1_PIG (Q5CD18), TGFR1_RAT (P80204)» more
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| PDB [Detailed view] |
13 PDB
1B6C; 1IAS; 1PY5; 2X7O; 3FAA; 3H9R; 3KCF; 3MDY; 4C02; 6EIX; 6I1S; 8POD; 8YHF » more |