Entry: PS51319

Forthcoming changes to the profile format
General information about the entry

Entry name [info] TFIIS_N
Accession [info] PS51319
Entry type [info] MATRIX
Date [info] JUN-2007 (CREATED); OCT-2013 (DATA UPDATE); MAR-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC51319
Associated ProRule [info] PRU00649

Name and characterization of the entry

Description [info] TFIIS N-terminal domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=82;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=77;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=3.2607410; R2=0.0219162; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=4488.61804; R2=11.92322; TEXT='HScore';
/CUT_OFF: LEVEL=0; SCORE=240; N_SCORE=8.5; H_SCORE=7338; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=148; N_SCORE=6.5; H_SCORE=6253; MODE=1; TEXT='?';
/DEFAULT: B1=*; E1=*; MM=*; II=*;
...
                A    C    D    E    F    G    H    I    K    L    M    N    P    Q    R    S    T    V    W    Y
/I:         B1=-85; E0=*; BD=-62;
/M: SY='E'; M=  -5, -49,  16,  24, -52,  -9,  -4, -42,   3, -29,  -5,   3, -14,  10, -12,  -3,  -6, -12, -50, -44; M0=-11;
/I:         MM=0; MI=-113; MD=-124; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='E'; M=   5,  -4,  -2,  20, -17, -21,   3,   2, -17,   5,   7, -35, -47,  -9, -13,  -3,  -3,   7, -45, -16; M0=-7;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='I'; M=  -2, -35, -60, -17,  -5, -52, -41,  19, -15,  16, -27, -49, -53, -19, -11, -43,   6,  18, -40, -36; M0=-18;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='K'; M=   0, -10,  -5,  -3, -11, -14,   6, -14,  18,   5,  -9,  -5, -45,   4,  12,   2,  -9,  -5, -51, -17; M0=-5;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='R'; M=   1, -49,  -4,   4,  -8,  -4,  13, -17,  12, -19,  -7,   2, -15,  -2,  19,   4,  -1, -16, -51, -18; M0=-5;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='W'; M=   9, -35, -60, -54,   3, -17,  -4,  14, -22,   1, -27, -20, -53, -46,   1,  -5, -36,   5,  44,   1; M0=-16;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='L'; M=   5,  -6, -57, -15, -17,  -7, -41,   2,  11,  19,  15, -47, -53,  -2, -18, -16, -13,   7, -40, -37; M0=-12;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='E'; M=   6, -14,  10,  18, -52, -15,   0, -50,  17, -40, -12,   0, -45,   8,   2,  -1,  -5, -45, -51, -25; M0=-14;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='P'; M=   7,  -6,  10,   0,  -3, -18, -31,   4,   7,  -2,  -9,  -4,  16,  -9,  -5,  -3, -14,  -8, -50, -11; M0=-3;
/I:         MM=-12; MI=-39; MD=-10; IM=-16; II=-6; DM=-7; DD=-14;
/M: SY='L'; M=  11, -27, -47, -16, -26,   6, -31,  14,  -2,  18,   6, -38, -43, -35, -19, -20,  -5,  -6, -31, -28; M0=-12;
/I:         MM=0; MI=-104; MD=-114; IM=-9; II=-11; DM=-27; DD=-2;
/M: SY='E'; M=   3, -42,  14,  14, -18,  -4, -23, -11,   5,  -9, -33,  11, -38,  13, -16,  -1, -17,  -2, -43, -37; M0=-7;
/I:         MM=0; MI=-106; MD=-116; IM=-9; II=-11; DM=-27; DD=-2;
/M: SY='K'; M=  10,   3,  -7,  -4,  -3,  -2, -25, -20,  18,   3,  -6,   3,  -2,   7,  -1,  -6,  -9, -21, -45, -38; M0=-4;
/I:         MM=0; MI=-107; MD=-64; IM=-9; II=-11; DM=-18; DD=-5;
/M: SY='M'; M=  11,  -2,  -1,   8, -48,   1,  -4, -20,   4,   2,  20,   5, -17,  -7,   3,  -1, -15, -18, -46,  -9; M0=-5;
/I:         MM=0; MI=-109; MD=-120; IM=-9; II=-11; DM=-2; DD=-27;
/M: SY='L'; M=  -3, -44,   2,  -3,  -5,   3, -32,   3,   2,  15, -11, -18, -46, -16, -11,  -1,  -1,   6, -47,   1; M0=-5;
/I:         MM=0; MI=-113; MD=-124; IM=-9; II=-11; DM=-10; DD=-10;
/M: SY='P'; M=  -1,   3,   3,  -5, -24,   0, -17,  -7,   1, -15, -40,  12,  19,   4, -11,   8,   0,  -8, -50, -24; M0=-5;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-4; DD=-20;
/M: SY='D'; M=   4,  -1,  22,   5, -29, -11,  -7,  -6,   9, -14, -40,  11, -23, -12,   1,  -7,   2, -15, -51, -44; M0=-7;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-9; DD=-11;
/M: SY='K'; M=   6,  -2,  -1,   1, -52,  12, -14, -17,  17, -24, -13,   1, -17,   8,   4,   3, -10, -11, -51, -44; M0=-7;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-9; DD=-11;
/M: SY='N'; M= -14, -12,   1,  -4, -14, -12,  -9, -18,  -5, -34, -40,  22,   5,  -7, -16,  20,   4,  -5, -51, -23; M0=-8;
/I:         MM=0; MI=-114; MD=-69; IM=-9; II=-11; DM=-9; DD=-11;
/M: SY='M'; M=  -2, -45,   5,   5,  -8,  -4, -32,   1,  -3,  11,  15,   1,  -7,  -1, -33,   0,  -2,  -8,   4,  -5; M0=-3;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-13; DD=-7;
/M: SY='P'; M=   7,  -8,  13,  12, -52, -20, -12, -14,  -7, -22, -40, -10,  25,  -6, -18,   4, -15, -11, -51, -44; M0=-10;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-13; DD=-7;
/M: SY='N'; M=   9,  -9,  14,  11, -18,  -2,  -8, -50,  -7, -12, -40,  14, -15,  -6, -12,   1,  12, -25, -51, -44; M0=-8;
/I:         MM=-10; MI=-114; MD=-10; IM=-9; II=-11; DM=-13; DD=-7;
/M: SY='V'; M=  -1, -26, -24,   8,   1, -43,  -1,   2, -40,   9,   8, -39, -44,  -1, -38, -20,  -7,  20, -31,  15; M0=-12;
/I:         MM=-2; MI=-104; MD=-31; IM=-9; II=-11; DM=-46; DD=-1;
/M: SY='E'; M=  -3, -39,   5,  18, -42, -17, -20, -39,   4,  -4, -30,  13, -35,   8,  -7,   8,   8, -35, -41, -34; M0=-10;
/I:         MM=0; MI=-102; MD=-54; IM=-9; II=-11; DM=-22; DD=-4;
/M: SY='I'; M= -10, -36, -11,   3,  -4, -19, -25,  22,   2,  -4,   4, -25, -39,   1,  14,   4, -16,  -5, -39,  -8; M0=-7;
/I:         MM=-2; MI=-30; MD=-116; IM=0; II=-53; DM=0; DD=-59;
/M: SY='C'; M=   2,  24, -60, -54, -14, -53, -41,  12,  -8,  15,   3, -49, -53,  10,   5, -30, -36,  15, -40, -36; M0=-19;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='L'; M= -12, -36, -53,   2,  -3, -19,  -8,  12,  -5,  17,  -4, -20, -52,  -4,  -1, -30,  -1,  13, -10, -16; M0=-10;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='E'; M=   4, -22,  17,  18, -52, -21,   1, -14,  11, -23, -40,  -1, -29,  -9,  -4,   9, -14, -15, -51, -44; M0=-10;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='L'; M=   5,   7, -61, -54, -19, -28,  -8,  14, -50,  21,  -2, -20, -20, -26, -48, -12,  -4,  10, -40,  -4; M0=-16;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='L'; M= -71, -64, -95, -89,   9, -94, -79,   5, -87,  31,  13, -91, -82, -73, -81, -88, -69, -48, -62, -65; M0=-58;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='R'; M= -11,   5,  -1,   4, -52, -19,  -5, -50,  16, -11, -19,  10, -45,  10,  21,  -2,   7, -45, -51, -44; M0=-13;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='A'; M=  11,  -6, -12,  10, -20, -24,   1,   1,   3,  -1, -40,  -6, -45,   4,   8,  -1,   3,   2, -51,  -6; M0=-5;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='L'; M= -29, -62, -92, -86, -23, -89, -75, -11, -83,  32,   1, -86, -80, -71, -78, -82, -66, -10, -61, -15; M0=-51;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='Q'; M=   2, -49,   6,  11, -10, -15,  -2, -50,  16,  -9,  -3,   3, -24,  18,   4,  -4, -11, -19, -51, -19; M0=-7;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='K'; M=  -4,   1,   9,   1, -52,  -7, -10, -39,  16,  -5,  -2,  12, -20,   8,   4,   4,   3, -30, -51, -44; M0=-8;
/I:         MM=-36; MI=-42; MD=-2; IM=-6; II=-15; DM=-7; DD=-14;
/M: SY='G'; M=  -1, -24,   2,   9,   0,  14,  -8, -24,  13,  -8, -15,  -8,  -3,  -4,  -9, -10, -11,   6, -27, -20; M0=-4;
/I:         MM=-1; MI=-85; MD=-44; IM=-9; II=-11; DM=0; DD=-59;
/M: SY='M'; M=  -6,  -2, -60, -27,   5, -29, -41,  10, -18,  20,  21, -49, -53, -46, -48, -26, -18,  15, -18,   4; M0=-17;
/I:         MM=-1; MI=-51; MD=-70; IM=-10; II=-10; DM=-4; DD=-21;
/M: SY='P'; M= -24, -49,   7,   0, -52, -25,  -5, -50,   1, -44, -40,   8,  32, -10,  -2,  -4,  -7, -12, -51,   2; M0=-15;
/I:         MM=-2; MI=-53; MD=-37; IM=-9; II=-11; DM=-12; DD=-9;
/M: SY='I'; M=  -5, -35, -60, -54,  -7, -52, -41,  25, -50,   6,  22, -49,  -5, -18, -48, -43, -18,  20, -40, -36; M0=-23;
/I:         MM=0; MI=-113; MD=-123; IM=-9; II=-11; DM=-3; DD=-23;
/M: SY='T'; M= -34, -49,  11,  -8, -52, -44, -10, -28,  -5, -49, -13,  16, -16,  -9, -17,  13,  27, -22, -51, -10; M0=-17;
/I:         MM=-1; MI=-51; MD=-72; IM=-25; II=-3; DM=-4; DD=-22;
/M: SY='V'; M= -10,  -5, -17,  10,   3, -45, -32,  -6,   9,   9, -37, -12,  -4, -16,   8,  -3,  -1,  10, -49,  -5; M0=-6;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-11; DD=-9;
/M: SY='E'; M= -13, -49,  20,  22, -52, -30,   0, -20,  12, -49, -40,   3, -45,   0,   1,  -1,  -1, -45, -51, -44; M0=-17;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-11; DD=-9;
/M: SY='H'; M=   7, -48,  -9,  -1, -51, -44,  21,  10, -12,   8, -13, -17, -23,  15, -13,  -9,   9,   1, -50, -26; M0=-9;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-11; DD=-9;
/M: SY='L'; M= -66, -60, -90, -84, -44, -32, -74,   5, -28,  32,  -2, -84, -79, -71, -77, -80, -64, -21, -61, -63; M0=-48;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-11; DD=-9;
/M: SY='Q'; M=  -8,  -5, -20,   8, -52, -28, -31,  -7,  17, -14, -27, -18, -45,  20,  19, -15,   6,   0, -51, -44; M0=-11;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-11; DD=-9;
/M: SY='E'; M=   1,  -7,   0,  19, -52, -16,  -3, -15,   7, -29,  -7, -15, -23,   4,   0,  14,   7, -12, -51, -44; M0=-9;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-11; DD=-9;
/M: SY='T'; M= -44,  13, -66, -63, -71, -53, -58, -67, -52, -69, -15,   2, -60, -23, -11,  17,  34, -59, -71, -69; M0=-40;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-11; DD=-9;
/M: SY='R'; M= -34, -49,   8,   2, -52,  18, -22, -50,  18, -20, -40,  -2, -21,  -1,  18,  -6, -15, -23, -51, -44; M0=-14;
/I:         MM=0; MI=-55; MD=-124; IM=-1; II=-39; DM=-11; DD=-9;
/M: SY='I'; M=   0,  -5, -62, -55, -36, -24, -43,  30, -51,   9,   4, -50, -54, -48, -50, -19, -17,  15, -41, -38; M0=-24;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-11; DD=-9;
/M: SY='G'; M=  -1, -35, -60, -54, -35,  34, -41, -12, -18, -11,   1, -49,  -8, -46, -25, -32, -36,  -8,   6, -36; M0=-22;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-11; DD=-9;
/M: SY='K'; M= -17, -48,  -9,  -3, -18, -23,   0,   5,  23, -21,  10, -31, -16, -10,  15, -21, -19,  15, -50, -44; M0=-11;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-11; DD=-9;
/M: SY='A'; M=  16, -48, -20, -15, -50, -22,   2,   5,   1,  -4, -39, -11,  -4, -27, -11,   3,  13,  11, -50, -15; M0=-8;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-11; DD=-9;
/M: SY='V'; M= -55, -50, -81, -78, -55, -79, -75,  16, -77,   4,  -9, -19, -76, -75, -77, -32, -55,  34, -70, -66; M0=-45;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-11; DD=-9;
/M: SY='N'; M= -18, -47, -34,   0, -50,   8, -14, -23,   1, -12,  10,  30, -45, -27,  -7,  -2,  -2,  -1, -49,  -1; M0=-11;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-11; DD=-9;
/M: SY='F'; M=   2,  -8,  -7, -15,  17,   5,  10, -50,  17, -29,  -4,  -6, -13,   7,   3,   4,  -8, -45, -51,   6; M0=-9;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-11; DD=-9;
/M: SY='L'; M= -24, -39, -64, -58,  11, -57, -45,   5, -54,  26,  -2, -53, -44, -50, -52, -47, -40,   3,  -1,  18; M0=-29;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-11; DD=-9;
/M: SY='R'; M= -13,  -9, -17, -28, -49, -44, -10, -17,   7,  -1, -38, -14, -45,  -2,  30,   5,   8, -24,   7,  -4; M0=-13;
/I:         MM=-1; MI=-53; MD=-53; IM=-35; II=-1; DM=-11; DD=-9;
/M: SY='K'; M= -19, -49,  -6, -27, -52, -18, -30, -18,  31, -49, -14,   1, -45,  -7,  11,   7,   0, -45, -50, -15; M0=-18;
/I:         MM=0; MI=-113; MD=-124; IM=-9; II=-11; DM=-5; DD=-18;
/M: SY='H'; M= -34,  -4,  -4, -12, -17, -44,  42, -18,   5, -29, -40,   5, -45,   5, -10,  13,  -7, -45, -51, -19; M0=-17;
/I:         MM=0; MI=-114; MD=-54; IM=-9; II=-11; DM=-11; DD=-9;
/M: SY='K'; M= -23,  16,  -6,   0, -15,  -3,   0, -48,  18, -23, -38,   7,  17, -22, -13,  14,  -6, -23, -46, -14; M0=-10;
/I:         MM=0; MI=-113; MD=-124; IM=-9; II=-11; DM=-20; DD=-4;
/M: SY='N'; M= -18, -49,  10,   0,  -9,  -7,   5, -23,   5, -28,  -6,  21, -14, -10,   3,  15,   4, -23, -50, -44; M0=-8;
/I:         MM=0; MI=-113; MD=-78; IM=-9; II=-11; DM=-5; DD=-18;
/M: SY='P'; M= -20, -49,  12,  18, -52, -19,  -1, -50,   2, -18, -17,   8,  19, -12,  -9,   5,  -7,  -5, -51, -44; M0=-11;
/I:         MM=-10; MI=-114; MD=-10; IM=-9; II=-11; DM=-13; DD=-7;
/M: SY='E'; M= -25, -40,   7,  24, -43, -21, -22, -41,   5, -40, -31, -13,   7,  -5, -10,  -1,  16,  -7, -42, -35; M0=-13;
/I:         MM=0; MI=-104; MD=-59; IM=-9; II=-11; DM=-2; DD=-32;
/M: SY='E'; M=  -5, -48,   8,  20, -29, -18,   5, -49,  17, -17, -24, -17,   9,   9,   2, -12,  -4, -44, -50, -23; M0=-11;
/I:         MM=-3; MI=-23; MD=-123; IM=-7; II=-14; DM=-1; DD=-34;
/M: SY='I'; M= -36, -50, -81, -77, -56, -78, -75,  28, -76,   4, -43,   6, -76, -19, -77, -71, -54,  26, -70, -66; M0=-43;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='R'; M=   6,   8, -34, -28, -50,   0,  -8,  -3,  15, -28, -38,  -6, -25,   7,  23,  -2, -19,   2,   2, -43; M0=-10;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='R'; M=  -9, -49,   6,  -5, -52,  -6,   5, -25,  17, -11, -40,   2, -16,   7,  18,   8,  -1, -18, -51, -44; M0=-8;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='L'; M=  -7, -38, -31,  -6,  -4, -50, -38,   5,   1,  24,   5, -42, -51,  -2,   4, -14, -11,  -5, -42, -38; M0=-13;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='A'; M=  32,   6, -73, -72, -58, -16, -60, -15, -68, -57, -50, -58, -59, -63, -21,   0, -21,   9, -62, -60; M0=-35;
/I:         MM=0; MI=-56; MD=-124; IM=-21; II=-4; DM=-7; DD=-14;
/M: SY='K'; M=  -5, -49,  -5,  -1, -52, -10, -10, -19,  26, -33, -40,  -7, -45,   2,  15,   1,   7, -23, -51, -15; M0=-12;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='K'; M=   9,  10,   8,   8, -52, -17, -12, -13,  13, -18, -40,   4, -45,  -8,   7,   6,   0,  -4, -51, -29; M0=-8;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='L'; M= -57, -53, -81, -75, -43, -75, -15,  17, -72,  27,  17, -72, -72, -65, -69, -21, -56,   2, -57, -56; M0=-42;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='I'; M= -14,  -5, -61, -54,   5, -53, -16,  24, -19,   7,  -9, -49, -34, -46, -19, -43, -36,  23, -40,   4; M0=-22;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='K'; M=   1, -49,   8,   5, -52,   0,  12, -50,  18, -31, -40,   9, -45,   2,   6,   9,  -2, -45, -51, -44; M0=-13;
/I:         MM=0; MI=-80; MD=-124; IM=-4; II=-21; DM=-7; DD=-14;
/M: SY='K'; M=  -7, -10,  -1,   9, -14,  -6,   2, -30,  22, -21, -23,   8, -22,   7,  -8,   6,  -3, -27, -51,   2; M0=-7;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='W'; M= -96, -81, -91, -95, -73, -82, -80,-100, -96, -50, -94, -93, -86, -93, -90,-100, -97,-100,  63, -69; M0=-86;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='K'; M=  -9, -47, -19, -28,  -7, -31, -31, -26,  30, -14,   9, -31, -45, -11,  13,   2,   6, -43, -49, -43; M0=-16;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='R'; M=   8, -21,   5,   5, -52,  -5,   2, -29,  17, -29, -40,   6, -45,  -6,  21,  -9,  -9, -30, -51, -44; M0=-12;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='P'; M=  -3, -46, -19,  -6,   2, -24,  -4,  12, -11,   6,   7, -19,  16,   6,  -4,  -1,  -3,   5, -49, -43; M0=-5;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='V'; M= -14, -35, -24, -54,   2, -27, -16,  21, -50,   9,  -9, -49, -17, -46, -13, -17, -28,  25, -40,  -7; M0=-17;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='D'; M=  -4,  -6,  16,   3,  -1, -22,  -7,  -2,   5,  -5, -17,   2,   6,  -4,   6,  -5,  -4, -22, -51,  11; M0=-3;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='E'; M=   9,  -6,   3,  14, -52,   6, -12, -14,  10, -40, -11,  11, -13,   7,  -9,   3, -14, -16, -51, -16; M0=-8;
/I:         MM=0; MI=-114; MD=-124; IM=-9; II=-11; DM=-7; DD=-14;
/M: SY='W'; M=  -2, -49,   0,  16, -52, -10,  19, -15,   3, -15, -40,  -4,   1,   9,   5,   1,  -3, -16,  23, -44; M0=-7;
/I:         B0=*; E1=-10;
» More

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_04 which contains 544'996 sequence entries.


Total number of hits 71 in 71 different sequences
Number of true positive hits 71 in 71 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Feature key [info] DOMAIN
Feature description [info] TFIIS N-terminal
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
71 sequences

EA3L1_HUMAN (Q3SY89), EA3L2_HUMAN (A6NLF2), ELOA1_DROME (Q9VCP0), 
ELOA1_HUMAN (Q14241), ELOA1_MOUSE (Q8CB77), ELOA1_RAT   (Q63187), 
ELOA2_HUMAN (Q8IYF1), ELOA3_HUMAN (Q8NG57), IWS1A_XENLA (Q6DE96), 
IWS1_ASHGO  (Q75EH2), IWS1_ASPFU  (Q4WSM6), IWS1_CAEBR  (Q61MR2), 
IWS1_CAEEL  (Q19375), IWS1_CANAL  (Q5AAR0), IWS1_CANGA  (Q6FVX3), 
IWS1_CRYNB  (P0CO39), IWS1_CRYNJ  (P0CO38), IWS1_DEBHA  (Q6BQ49), 
IWS1_EMENI  (Q5BEG5), IWS1_GIBZE  (Q4IJ11), IWS1_HUMAN  (Q96ST2), 
IWS1_KLULA  (Q6CVL1), IWS1_MOUSE  (Q8C1D8), IWS1_NEUCR  (Q870S2), 
IWS1_RAT    (Q3SWT4), IWS1_SCHPO  (O42964), IWS1_USTMA  (Q4P7X6), 
IWS1_XENTR  (Q505H7), IWS1_YARLI  (Q6CGB2), IWS1_YEAST  (Q06505), 
MD26A_ARATH (F4J4Y5), MD26B_ARATH (Q9FHK9), MD26C_ARATH (F4KFC7), 
MED26_BOVIN (A5PK23), MED26_DANRE (Q90YL3), MED26_DROME (Q9V4F9), 
MED26_DROPS (Q29CV2), MED26_HUMAN (O95402), MED26_MOUSE (Q7TN02), 
MED26_XENLA (Q90YY5), PP1RA_HUMAN (Q96QC0), PP1RA_MACMU (Q5TM61), 
PP1RA_MOUSE (Q80W00), PP1RA_PANTR (Q7YR38), PP1RA_PIG   (Q767K9), 
PP1RA_RAT   (O55000), PP1RA_XENLA (Q6GLQ4), TCEA1_BOVIN (Q29RL9), 
TCEA1_DICDI (Q54YG9), TCEA1_HUMAN (P23193), TCEA1_MOUSE (P10711), 
TCEA1_RAT   (Q4KLL0), TCEA2_BOVIN (Q148K0), TCEA2_HUMAN (Q15560), 
TCEA2_MOUSE (Q9QVN7), TCEA2_RAT   (Q63799), TCEA3_BOVIN (Q2KI09), 
TCEA3_HUMAN (O75764), TCEA3_MOUSE (P23881), TEAN2_BOVIN (A5PKE4), 
TEAN2_DANRE (B0UYI1), TEAN2_HUMAN (Q96MN5), TEAN2_MOUSE (Q8R2M0), 
TEAN2_RAT   (Q5XIC7), TEANC_HUMAN (Q8N8B7), TEANC_MACFA (Q9GMV6), 
TEANC_MOUSE (Q3US16), TFS2_CAEEL  (P52652), TFS2_DROME  (P20232), 
TFS2_SCHPO  (P49373), TFS2_YEAST  (P07273)
» More

PDB
[Detailed view]
5 PDB

1EO0; 1WJT; 3NFQ; 3O8Z; 3OAK

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