PROSITE entry PS51470
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General information about the entry
| Entry name [info] | FG_GAP |
| Accession [info] | PS51470 |
| Entry type [info] | MATRIX |
| Date [info] |
01-DEC-2009 CREATED;
01-APR-2016 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC51470 |
| Associated ProRule [info] | PRU00803 |
Name and characterization of the entry
| Description [info] | FG-GAP repeat profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=61; /DISJOINT: DEFINITION=PROTECT; N1=1; N2=61; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.6799066; R2=0.0073510; TEXT='NScore'; /CUT_OFF: LEVEL=0; SCORE=928; N_SCORE=8.5; MODE=1; TEXT='R'; /CUT_OFF: LEVEL=-1; SCORE=520; N_SCORE=5.5; MODE=1; TEXT='R?'; /DEFAULT: M0=-19; D=-250; I=-250; B1=-200; E1=-200; MI=-155; MD=-155; IM=-155; DM=-155; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; BI=-155; BD=-155; /M: SY='Q'; M= -18, -23, 1, 6, -33, -17, 10, -12, -12, -18, -25, 36, -28, 40, -4, -5, -8, -22, -35, -26; /I: B1=-25; BI=-155; BD=-155; /M: SY='R'; M= -10, -21, -6, -13, -17, 0, -12, 0, -6, 7, 0, -7, 6, -13, 15, 2, 6, 11, -9, 0; /I: B1=-50; BI=-155; BD=-155; /M: SY='D'; M= -9, -24, 19, -1, -13, -8, -21, 11, -13, 8, -14, -14, 7, -19, -8, 3, 10, 2, -3, -18; /I: B1=-70; BI=-155; BD=-155; /M: SY='T'; M= -3, -30, 2, 8, 0, -23, 9, -6, -3, 10, -15, -8, 9, 10, -5, -9, 10, 1, -31, -3; /M: SY='G'; M= 2, -10, -18, 10, -21, 16, 9, -10, 1, -13, -10, -3, 1, -9, 0, 12, 6, -12, -32, -3; /I: B1=-100; BI=-155; BD=-155; I=-44; MD=-27; /M: SY='S'; M= -6, -41, 9, -21, -21, 19, 8, 0, -14, -25, -33, 13, 6, -7, -23, 30, -7, -18, -68, -13; D=-44; /I: I=-44; MD=-27; /M: SY='W'; M= -7, -71, -7, -16, -5, -26, 36, -46, -1, -40, -43, -28, 30, 8, -42, 20, -4, -29, 40, -34; D=-44; /I: I=-44; MI=0; MD=-27; IM=0; DM=-27; /M: SY='E'; M= -22, -2, -17, 33, 20, 30, -6, -45, -42, -26, -26, -18, -14, -19, -34, -8, -36, -43, -32, -33; D=-44; /I: I=-44; DM=-27; /M: SY='E'; M= -28, -67, 14, 28, -13, 28, 1, -18, -9, -41, -17, 12, 0, 25, -1, 1, -21, -51, -68, -32; D=-44; /I: I=-44; DM=-27; /M: SY='Q'; M= -29, -67, -14, 4, -10, -34, 28, -39, 32, -28, 10, -25, 36, 49, 5, -8, -18, -22, -59, 19; D=-44; /I: I=-44; DM=-27; /M: SY='G'; M= -8, -49, 13, 20, -25, 24, -1, -5, -25, -27, 18, -15, 21, -5, 3, 6, 12, -13, -64, -14; /M: SY='Y'; M= -1, -60, 2, -31, 16, 34, 7, -20, -45, 0, 34, 35, -13, -48, -42, 5, -30, -49, 7, 36; /M: SY='S'; M= 16, 50, -18, -9, -62, 7, -21, -52, -16, -46, 19, -26, -33, 46, 4, 53, -17, -53, -67, -44; /M: SY='W'; M= -38, -67, -53, -19, 4, -16, 10, -53, -23, -31, 20, -21, -39, 44, 30, 4, -13, -55, 87, 69; /M: SY='F'; M= -25, -18, -68, -31, 96, -39, -54, -16, -61, 29, 4, -62, -69, -20, -39, -45, -36, -29, -39, -18; /M: SY='G'; M= -37, -64, -52, -64, -70, 99, -59, -77, -57, -73, -62, -38, -56, -55, -65, -37, -56, -56, -61, -65; /M: SY='Y'; M= -1, -44, -51, -32, 50, -24, -10, -11, -44, -4, -2, -53, -63, 8, -17, 12, -9, 2, 33, 67; /M: SY='S'; M= 28, -41, -29, -19, -60, -32, -50, -49, -45, -58, -53, -23, -37, -35, -42, 79, 41, -19, -70, -55; /M: SY='V'; M= 8, -56, -68, -62, -38, -53, -61, 31, -61, 48, 25, -62, -64, -58, -62, -22, -20, 51, -65, -46; /M: SY='A'; M= 41, 20, 22, -20, -31, -46, 36, -49, -21, -14, -46, -42, -56, 6, 11, 21, 18, 3, -69, -50; /M: SY='G'; M= 9, -59, -54, -34, 18, 30, -31, -5, -40, -11, -20, -18, -8, 9, -1, 25, 0, 15, -12, -7; /I: I=-17; MD=-10; /M: SY='H'; M= -1, -63, -40, -34, -27, 13, 42, -29, -43, 9, -24, 0, -64, -1, -50, -2, 19, 11, -69, 1; D=-17; /I: I=-17; MI=0; MD=-10; IM=0; DM=-10; /M: SY='D'; M= -74, -88, 88, -11, -92, -72, 3, -92, -52, -90, -87, -30, -36, -38, -68, -63, -65, -89,-106, -57; D=-17; /I: I=-17; MI=0; MD=-10; IM=0; DM=-10; /M: SY='L'; M= -49, -47, -99, -92, -8, -99, -89, 14, -90, 25, -5, -93, -95, -88, -68, -86, -59, 12, -87, -68; D=-17; /I: I=-17; DM=-10; /M: SY='N'; M= -64, -84, 49, -52, -89, -59, -62, -87, -56, -60, -83, 61, -82, -45, -60, -31, -18, -77,-105, -59; D=-17; /I: I=-17; DM=-10; /M: SY='G'; M= -37, -77, -21, -36, -80, 43, -16, -77, 0, -63, -6, 2, -56, 42, -1, -13, -53, -55, -78, -69; D=-17; /I: I=-17; DM=-10; /M: SY='D'; M= -46, -73, 80, -31, -80, -45, -49, -77, -15, -80, -73, 56, 19, -44, -41, -39, -36, -76, -91, -68; D=-17; /I: I=-17; MI=0; MD=-10; IM=0; DM=-10; /M: SY='G'; M= -42, -70, -30, -59, -64, 78, -37, -81, -23, -78, -68, -32, -63, -35, -19, 12, -25, -75, -71, -69; D=-17; /I: I=-17; MI=0; MD=-10; IM=0; DM=-10; /M: SY='Y'; M= -65, -80, -73, -34, 10, -70, -20, -23, -1, 9, -15, -16, -81, -37, -31, -21, -52, -33, 22, 47; D=-17; /I: I=-17; DM=-10; /M: SY='P'; M= -12, -67, -2, -26, -55, -14, 1, -39, -52, -65, -28, 31, 49, 8, -60, -22, 48, -25, -79, -63; D=-17; /I: I=-17; MI=0; MD=-10; IM=0; DM=-10; /M: SY='D'; M= -51, -67, 90, -5, -72, -19, -23, -71, -12, -59, -66, 2, -57, 3, -16, 24, -25, -58, -82, -39; D=-17; /I: I=-17; MI=0; MD=-10; IM=0; DM=-10; /M: SY='L'; M= -36, -58, -71, -65, 17, -72, -63, 44, -64, 52, -10, -67, -32, -62, -64, -59, -46, 51, -60, -33; /I: I=-76; MI=0; MD=-47; IM=0; DM=-47; /M: SY='L'; M= 25, -55, -51, -60, -14, -63, -61, 26, -60, 49, 7, -62, -64, -41, -61, -38, -22, 46, -63, -45; /M: SY='V'; M= 15, -55, -67, -62, -16, -56, -66, 39, -60, 8, 15, -60, -63, -59, -62, -30, -1, 69, -67, -47; /M: SY='G'; M= -8, 75, -54, -62, -67, 87, -59, -73, -56, -69, -60, -41, -59, -56, -40, -14, -38, -65, -65, -65; /M: SY='A'; M= 82, -31, -39, -48, -63, 5, -55, -53, -41, -51, -35, -46, -54, -46, -43, 25, -20, -27, -64, -58; /M: SY='P'; M= -53, -74, -55, -34, 2, -58, 22, -45, -46, -23, -50, -59, 111, -29, -44, -52, -41, -11, -21, -31; /M: SY='G'; M= -39, -62, -46, -43, 9, 46, 1, -48, -5, 14, 6, -13, -60, 4, 41, -9, -1, -52, 20, 2; /M: SY='Y'; M= 24, -61, 2, 15, 9, -15, 5, -34, -34, -36, -47, -34, -46, 6, -20, 24, -13, -11, 54, 58; /I: I=-33; MD=-21; /M: SY='H'; M= -6, -63, 14, -5, 20, 17, 31, -29, -2, -28, 11, 5, -29, -23, -35, 10, -12, -16, -5, 30; D=-33; /I: I=-33; MD=-21; /M: SY='W'; M= -17, -74, -9, -7, -24, -17, -3, -30, -15, -38, -61, 14, -36, -5, -22, 5, -3, -14, 42, -12; D=-33; /I: I=-33; MD=-21; /M: SY='R'; M= -4, -76, -36, -21, -44, -20, -17, -19, -43, -30, -60, -34, -2, -12, 14, -5, -3, 9, -83, -67; D=-33; /I: I=-33; MD=-21; /M: SY='C'; M= -22, 26, -34, -36, -46, -21, -43, -55, -47, -30, -71, -29, -53, 6, -48, -37, -13, -13, -89, -12; D=-33; /I: I=-33; MI=0; MD=-21; IM=0; DM=-21; /M: SY='Y'; M= -40, -66, 29, 6, 8, -43, -23, -41, -9, 2, -33, 20, -63, 20, -1, -29, 9, -31, -54, 55; D=-33; /I: I=-33; DM=-21; /M: SY='W'; M= -47, -69, -20, 19, -30, -30, 25, -42, -19, -13, -26, -2, 13, 24, 44, -2, -17, -41, 97, -21; D=-33; /I: I=-33; DM=-21; /M: SY='T'; M= 12, -58, -25, -20, -37, 0, -8, -18, 3, -31, -6, -6, -3, 25, 17, 25, 34, 3, -65, -26; /M: SY='G'; M= -39, -65, -29, -56, -67, 90, -54, -74, -38, -62, -43, -39, -57, -7, 28, -39, -55, -56, -61, -35; /M: SY='P'; M= 31, -27, -17, -44, -48, 3, -27, -11, -5, -17, 4, -40, 47, 24, 12, 9, 8, -17, -65, -54; /M: SY='V'; M= -21, 71, -70, -65, -12, -62, -68, 28, -62, 7, -17, -63, -67, -46, -64, -47, -37, 74, -71, -48; /M: SY='Y'; M= -12, -62, -62, -60, 45, -43, -7, 9, -42, 11, -34, -58, -67, -39, -30, -9, -36, 9, 1, 89; /M: SY='I'; M= -16, -60, 3, -27, -38, -50, -3, 32, 7, 19, -12, -30, -60, 5, 9, -4, 4, 28, 17, -14; /M: SY='C'; M= -9, 75, -36, -33, 42, -64, -36, 10, -31, 7, -8, -43, -67, -29, -57, -43, -21, 19, -46, 62; /M: SY='P'; M= -33, -62, 6, -11, -39, -18, 24, -19, -13, -13, -19, 34, 41, 22, 11, 14, 20, -40, -63, 15; /M: SY='Q'; M= 3, -33, -13, -30, -37, 28, -28, -4, -23, -8, -25, 10, 18, 28, -43, 18, -4, 12, 16, -17; /M: SY='N'; M= -11, -60, 19, 12, -44, -3, 26, -36, 3, -52, -29, 38, -6, 22, 8, 29, 21, -28, -70, -47; /M: SY='Q'; M= -8, -60, -2, 0, 5, -1, -14, -16, 4, 12, 10, -13, -3, 36, -13, 13, 10, -12, -15, -38; /I: E1=-100; IE=-155; DE=-155; /M: SY='Q'; M= -9, -19, 2, 2, -15, 12, 1, -7, 2, -8, -11, 14, -12, 14, 11, 9, 1, -21, -33, -26; /I: E1=-70; IE=-155; DE=-155; /M: SY='G'; M= -11, -30, -4, -15, 15, 15, -7, -2, -13, -3, 0, -1, 4, -7, 8, 2, 5, 0, -29, -11; /M: SY='C'; M= -1, 17, -3, 5, -4, -8, -16, 5, -10, 2, -15, 2, 6, 6, -8, 5, 8, -12, 4, -5; /I: E1=-30; IE=-155; DE=-155; /M: SY='P'; M= -5, -4, 7, 1, 5, -6, -11, -16, -3, -3, -6, 0, 22, 5, 6, 8, 4, -15, -15, -15; /I: E1=-15; IE=-155; DE=-155; /M: SY='P'; M= -6, 10, 0, 2, -6, -14, -8, -11, -1, -8, 0, -4, 16, 11, 6, 12, 2, -14, 6, 4; /I: E1=0; IE=-155; DE=-155;» more |
Numerical results [info]
| Total number of hits | 430 in 63 different sequences |
| Number of true positive hits | 430 in 63 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 10 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 97.73 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 7 |
| Matrix type [info] | protein_domain |
| Scaling database [info] | reversed |
| Author [info] | N_Hulo |
| Feature key [info] | REPEAT |
| Feature description [info] | FG-GAP |
| Version [info] | 2 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
63 sequences
INA1_CAEEL (Q03600), ITA10_HUMAN (O75578), ITA11_HUMAN (Q9UKX5), ITA11_MOUSE (P61622), ITA1_DROME (Q24247), ITA1_HUMAN (P56199), ITA1_MOUSE (Q3V3R4), ITA1_RAT(P18614), ITA2B_HUMAN (P08514), ITA2B_MOUSE (Q9QUM0), ITA2B_PAPCY (P53711), ITA2_BOVIN (P53710), ITA2_DROME (P12080), ITA2_HUMAN (P17301), ITA2_MOUSE (Q62469), ITA3_BOVIN (F1MMS9), ITA3_CRIGR (P17852), ITA3_DROME (O44386), ITA3_HUMAN (P26006), ITA3_MOUSE (Q62470), ITA4_DROME (Q9V7A4), ITA4_HUMAN (P13612), ITA4_MOUSE (Q00651), ITA4_XENLA (Q91687), ITA5_BOVIN (Q27977), ITA5_DROME (Q9W1M8), ITA5_HUMAN (P08648), ITA5_MOUSE (P11688), ITA5_XENLA (Q06274), ITA6_CHICK (P26007), ITA6_HUMAN (P23229), ITA6_MOUSE (Q61739), ITA7_HUMAN (Q13683), ITA7_MOUSE (Q61738), ITA7_RAT(Q63258), ITA8_CHICK (P26009), ITA8_HUMAN (P53708), ITA8_MOUSE (A2ARA8), ITA9_HUMAN (Q13797), ITA9_MOUSE (B8JK39), ITAD_HUMAN (Q13349), ITAD_MOUSE (Q3V0T4), ITAD_RAT(Q9QYE7), ITAE_HUMAN (P38570), ITAE_MOUSE (Q60677), ITAL_BOVIN (P61625), ITAL_HUMAN (P20701), ITAL_MOUSE (P24063), ITAM_HUMAN (P11215), ITAM_MOUSE (P05555), ITAV_BOVIN (P80746), ITAV_CHICK (P26008), ITAV_HUMAN (P06756), ITAV_MOUSE (P43406), ITAX_HUMAN (P20702), ITAX_MOUSE (Q9QXH4), PAT2_CAEBR (A8X3A7), PAT2_CAEEL (P34446), PHLD_BOVIN (P80109), PHLD_HUMAN (P80108), PHLD_MOUSE (O70362), PHLD_RAT(Q8R2H5), PLDG_DICDI (Q86AV9)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
10 sequences
CRAC1_HUMAN (Q9NQ79), CRAC1_MOUSE (Q8R555), CRAC1_XENTR (Q0V9M0), ITFG2_BOVIN (Q27969), ITFG2_HUMAN (Q969R8), ITFG2_MOUSE (Q91WI7), ITFG2_PONAB (Q5RBH8), TIP_HUMAN (Q8TB96), TIP_MOUSE (Q99KW9), TIP_RAT (Q8R4E1)» more |
| PDB [Detailed view] |
118 PDB
1JV2; 1L5G; 1M1X; 1TYE; 1U8C; 2VC2; 2VDK; 2VDL; 2VDM; 2VDN; 2VDO; 2VDP; 2VDQ; 2VDR; 3FCS; 3FCU; 3IJE; 3K6S; 3K71; 3K72; 3NID; 3NIF; 3NIG; 3T3M; 3T3P; 3V4P; 3V4V; 3VI3; 3VI4; 3ZDX; 3ZDY; 3ZDZ; 3ZE0; 3ZE1; 3ZE2; 4CAK; 4G1E; 4G1M; 4MMX; 4MMY; 4MMZ; 4NEH; 4NEN; 4O02; 4UM8; 4UM9; 4WJK; 4WK0; 4WK2; 4WK4; 4Z7N; 4Z7O; 4Z7Q; 5E6R; 5E6S; 5E6U; 5ES4; 5FFG; 5FFO; 5HDB; 5NEM; 5NER; 5NET; 5NEU; 6AVQ; 6AVR; 6AVU; 6DJP; 6MK0; 6MSL; 6MSU; 6NAJ; 6OM1; 6OM2; 6UJA; 6UJB; 6UJC; 6V4P; 7CEB; 7CEC; 7L8P; 7LA4; 7NWL; 7NXD; 7P2D; 7TCT; 7TD8; 7THO; 7TMZ; 7TPD; 7U60; 7U9F; 7U9V; 7UBR; 7UCY; 7UDG; 7UDH; 7UE0; 7UFH; 7UH8; 7UJE; 7UJK; 7UK9; 7UKO; 7UKP; 7UKT; 7USL; 7USM; 7Y1T; 8GCD; 8GCE; 8IJ5; 8T2U; 8T2V; 8TCF; 8TCG; 8ZJF; 9CKV » more |