Entry: PS51512

Forthcoming changes to the profile format
General information about the entry

Entry name [info] DFDF
Accession [info] PS51512
Entry type [info] MATRIX
Date [info] MAY-2011 (CREATED); OCT-2013 (DATA UPDATE); JUL-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC51512
Associated ProRule [info] PRU00845

Name and characterization of the entry

Description [info] DFDF domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=37;
/DISJOINT: DEFINITION=PROTECT; N1=4; N2=34;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.4585652; R2=0.0060479; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=3022.60957; R2=16.61188; TEXT='HScore';
/CUT_OFF: LEVEL=0; SCORE=999; N_SCORE=8.5; H_SCORE=16877; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=669; N_SCORE=6.5; H_SCORE=14119; MODE=1; TEXT='?';
/DEFAULT: M0=-35; D=-100; I=-100; B1=-1000; E1=-1000; MI=-255; MD=-255; IM=-255; DM=-255;
...
                A    C    D    E    F    G    H    I    K    L    M    N    P    Q    R    S    T    V    W    Y
/I:         B1=0; BI=-255; BD=-255;
/M: SY='N'; M=  17,-102, -29,  -3,   3,   4, -24, -34, -65, -53, -91,  41,  29,  29,  -7,  27,  17,  -6,  -3, -39;
/M: SY='Q'; M=   3, -59,   1,   8, -34,   4,  -7, -53,   4, -60, -93,  29,  29,  42,  25,   7,  23, -30,-109, -96;
/M: SY='P'; M=  12,-106,  39,  19, -76,  -9, -19, -15,   0, -78, -94, -12,  58,  -6, -11,  19, -29,   1,   4, -98;
/M: SY='K'; M=  21,-103,   5,  23, -69, -10, -21, -20,  37, -92, -20,  26,  15,  11,   3, -17,   4,   4, -47, -70;
/M: SY='P'; M=  16,-102,   6,  16, -41, -22, -56, -21,  25, -16, -61,  24,  30,   5, -20,  18,  20, -33,  -7, -95;
/M: SY='P'; M= -19,-104,  40,  -6,-101, -60,  29, -22,  28, -36, -15,   8,  46, -41, -15,  -6,  21,  24,-114, -95;
/M: SY='E'; M=  23,-101, -12,  49, -54, -11, -30,  19, -30,  -5,   1, -41,   3, -19, -73,  -2,  31,  -2,-109, -95;
/M: SY='K'; M= -45,-104,   4,  19, -54, -73, -56,   2,  55, -47, -28,  17,  -2,  42, -24, -28,   9,  28,-108, -57;
/M: SY='P'; M= -25, -40, -85,   2,  76, -52, -59, -17, -49, -11,  11,  -4,  76, -36, -99, -49, -42, -24, -92,  -9;
/M: SY='D'; M=   0,-103,  54,  34,-106, -37, -34,-101,  19, -47,  29,  17,  14,  15, -44,  16,  29, -97,-113, -97;
/M: SY='E'; M= -10,-104,  19,  61,-108,  21, -88,-102, -17,-103, -97,   7,  -8,  30,   5,   6,  26, -13,-111,-100;
/M: SY='D'; M=  -8,-110,  99,  75,-115, -97, -84,-114, -80,-110,-107, -74, -17, -76, -89, -85, -88,-108,-121,-102;
/M: SY='F'; M=-105,-103,-115,-112, 120,-112, -91, -80,-106, -72, -80,-106,-116,-113,-103,-103, -97, -85, -68,  65;
/M: SY='D'; M= -97,-109, 120, -63,-117, -93, -82,-115, -84,-114,-112,  37, -97, -84, -93, -84, -86,-112,-133,-101;
/M: SY='F'; M=-105,-102,-117,-113, 124,-113, -95, -52,-108, -43, -80,-107,-116,-116,-105,-104, -97, -84, -70,  30;
/M: SY='E'; M=  26,-106, -25,  92,-110, -97, -85, -51, -76,-101,  -8, -47, -90,  60, -83,  -7, -28, -74,-109, -99;
/M: SY='S'; M=  32,-100, -43,  22,-108,  22, -90,-105,  26,-104, -97, -48, -94,  33,   5,  54,  20, -97,-108, -98;
/M: SY='N'; M=  59, -28, -84, -54,-102, -23, -85, -95, -86, -96,  65,  83, -99, -19, -92,  34, -79, -91,-112, -97;
/M: SY='N'; M= -31, -98, -78, -92, -48, -90, -81, -86, -85,  50, -81, 108,-106, -11, -38, -59, -82, -90,-114, -93;
/I:         I=-24; MI=0; MD=-61; IM=0; DM=-61;
/M: SY='A'; M=  74, -98, -50,  42,-108, -70, -91,-100,   4, -84, -33, -27, -94,  46, -47,  11, -22, -71,-107, -99;
/M: SY='K'; M= -47,-107, -43,  35,-101,-102, -87, -97,  85,  12,  25, -50, -96,  32,  20, -89, -89, -96,-104, -93;
/M: SY='F'; M= -21,-101,-116,-111, 119,-111, -98, -50,-108,  17, -77,-107,-114,-114,-105,-102, -96, -81, -75, -54;
/M: SY='N'; M=  -8,-104,  63,  56,-111, -91, -82,-109,   9,-109,-101,  75, -95,  -5, -14, -15, -17,-105,-117,-100;
/M: SY='K'; M= -50,-108, -57,  42,-110,-101, -87,-110, 104,-108, -97, -80, -92, -69,   0, -59, -88,-105,-104, -97;
/M: SY='E'; M= -32,-109,  27,  61,-103, -24, -38,  17,  16, -10, -38, -62,  19,  51, -15, -21, -47, -72,-109, -96;
/M: SY='E'; M=  13,-104,  43,  43,-103, -47, -18, -67,  20, -10,   1, -43, -96,  12,  27,   1,  22, -49,-111, -96;
/M: SY='V'; M=   7, -47, -17,  30, -68, -60, -99,  34, -17,  20, -79, -19, -34, -90, -96,  10,  -2,  45,-110, -93;
/M: SY='W'; M=  11,-104,   2,  19,  51, -97, -26, -13, -13, -35, -56, -24, -34,  22, -54,  34, -64, -12,  89, -25;
/M: SY='K'; M=  10,-104,  33,  24, -13,  18, -42, -11,  36,  -6, -27,   6, -42,  -2, -25, -27,   5, -47,-107, -94;
/M: SY='E'; M=  -8,-106,   6,  66, -68, -39,  16, -18,  39, -56, -93,  -6, -24,  27, -39,  -8,  -1, -28,-108, -25;
/M: SY='Q'; M=  10,-102, -45,  -4,  17, -80, -94,  22,  15,  26,  27, -92, -32,  37, -59,   0,  16, -12,-102, -42;
/M: SY='E'; M= -10,-104, -22,  45,-102,  32, -35,   1,   6, -38, -26,  -2, -56,  17,   9,   3,  25, -33,-108, -46;
/M: SY='K'; M=  34,-102,  -4,  42,-105, -18, -89, -73,  52, -53,  -8,  18, -61, -10, -34,  28, -52, -36,-108, -53;
/M: SY='K'; M= -21, -64,   8,  25,-103,   0,   1, -16,  46, -52, -48,  20, -36,   5, -46,  36,  18, -29,-109, -32;
/M: SY='D'; M=   5, -48,  56,  10,  -4,  25, -11, -49,   5, -33, -62,   0,   8,  10, -50,   0,   1, -34,-110, -95;
/M: SY='T'; M=  13,-103,   1,  23, -98, -18,   1, -47,  28, -29, -33,   1,   9,  17, -44,  21,  30, -30,-106,  15;
/M: SY='S'; M= -10, -40,  -8,  14, -50, -28, -26, -21,  12, -27, -89,   2,  24,  -9,   0,  28,  22,  14,-105,  22;
/I:         E1=0; IE=-255; DE=-255;
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_08 which contains 546'238 sequence entries.


Total number of hits 27 in 27 different sequences
Number of true positive hits 27 in 27 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Feature key [info] DOMAIN
Feature description [info] DFDF
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
27 sequences

DCP5L_ARATH (Q9FH77), DCP5_ARATH  (Q9C658), EDC3_CHICK  (Q5ZLS2), 
EDC3_DANRE  (Q502M5), EDC3_DROME  (Q9VVI2), EDC3_HUMAN  (Q96F86), 
EDC3_MACFA  (Q4R8V9), EDC3_MOUSE  (Q8K2D3), EDC3_PONAB  (Q5RDU9), 
EDC3_SCHPO  (O94752), EDC3_XENLA  (Q5XH48), EDC3_YEAST  (P39998), 
L14AA_XENLA (A0A8M2), L14AB_XENLA (Q8AVJ2), L14BA_XENLA (Q68FI1), 
L14BB_XENLA (Q498K9), LS14A_BOVIN (Q3MHF8), LS14A_HUMAN (Q8ND56), 
LS14A_MOUSE (Q8K2F8), LS14A_PONAB (Q5R4R4), LS14A_XENTR (Q6NVR8), 
LS14B_HUMAN (Q9BX40), LS14B_MOUSE (Q8CGC4), LS14B_XENTR (Q566L7), 
LSM14_PLEWA (Q9YH12), SCD6_YEAST  (P45978), SUM2_SCHPO  (Q9HGL3)
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PDB
[Detailed view]
4 PDB

2WAX; 2WAY; 4A53; 4BRU

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