Entry: PS51536

Forthcoming changes to the profile format
General information about the entry

Entry name [info] TFG
Accession [info] PS51536
Entry type [info] MATRIX
Date [info] MAY-2010 (CREATED); OCT-2013 (DATA UPDATE); SEP-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC51512
Associated ProRule [info] PRU00869

Name and characterization of the entry

Description [info] TFG box profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=21;
/DISJOINT: DEFINITION=PROTECT; N1=3; N2=19;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.3437343; R2=0.0096206; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=1939.43907; R2=7.06244; TEXT='HScore';
/CUT_OFF: LEVEL=0; SCORE=900; N_SCORE=11.0; H_SCORE=7561; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=433; N_SCORE=6.5; H_SCORE=4990; MODE=1; TEXT='?';
/DEFAULT: M0=-103; D=-100; I=-100; B1=-1000; E1=-1000; MI=-255; MD=-255; IM=-255; DM=-255;
...
                A    C    D    E    F    G    H    I    K    L    M    N    P    Q    R    S    T    V    W    Y
/I:         B1=0; BI=-255; BD=-255;
/M: SY='N'; M=  -1,-252,  40, -20, -40,  16,  19, -58,  10,-251, -34,  58,  -8,  49,  22,  -9,  -3,-135,-258,-242;
/M: SY='Q'; M= -55,-254,  -5,  -2, -88,  56, -32, -21,  12, -23, -10,   0,   0,  57,  25, -23,  -2,-245,-254,-244;
/M: SY='R'; M= -49,-256,-236,-229, -32, -20,  45,-254,  32, -76,-241,  14,  42,  26,  87,   0, -96,-251,-254,-239;
/M: SY='M'; M=   8,-248, -11,  13, -59, -21,-237, -18, -28, -38,  69,  25,  -6,  40,-237,  21,  42, -21, -10,-240;
/M: SY='W'; M= -38, -51,  43,   2, -55, -42,-234, -70, -35, -46,-241,  30,-246,  61,  64, -19,  19,-248,  74,-237;
/M: SY='W'; M= -58,-258,-250,-240,  64, -93,  23,-244, -27, -16,-236, -24, -61, -27,  85,-243,-245,-246, 115, -35;
/M: SY='R'; M=  40,-250, -44,  30,-250,  -2, -21,-249, -70,-247,  33,  14,  19,   3,  45,  42, -68,-244,-253,  -2;
/M: SY='E'; M= -24,-255,  23,  86,-258,  -7, -31,-255,  45,-253,-246, -19,-238,  41, -93, -28, -55, -46,-257,-246;
/M: SY='Q'; M= -58,-256,-221,  87,-255,-248,  43,-249,-221, -39,  31,  13,-240,  89,  -8,-232,-238, -74,-256,-240;
/M: SY='R'; M=-241,-256,-237, -17,-250,-250,-230, -69,  40,-142,  63,   9,-248,  -9, 103, -23,-106,-246,-253,-239;
/M: SY='R'; M= -31,-254, -72,  44,-251,-247, -37, -44,  58, -46,  26,  -1,-244,  38,  66,  -4, -41,-109,-254,-241;
/M: SY='L'; M= -27,-250,-250,-241,-232,-255, -61,  42,  12,  52,  31,-243, -60,  27,  35,-240,  19,  -5, -35,-235;
/M: SY='N'; M=-241,-250,  92,-222,-256,-235,-226,-249,-229,-256,-250, 108,-248,-230,-238,-227,-228,  -2,-276,-248;
/M: SY='M'; M=  -2,-246,-246,-240,-107, -97, -67,  19,  11,   5,  79,-238,  19,   9,-239,  -6,  64,   6,-255,-238;
/M: SY='E'; M=   1,-255,  52, 105,-258,-247,-232,-256,-223, -46, -38, -27,-236, -49,-232, -71,-236,-250,-260,-249;
/M: SY='T'; M=   6,-238,-235,-238,-245,-243,-245,-236,-235,-241,-237,-225,-237,-239,-243,-213, 124,-228,-264,-243;
/M: SY='F'; M=-253,-249,-265,-261, 133,-260,-245,-226,-256,-218,-228,-254,-263,-267,-253,-251,-245,-231,-218,-196;
/M: SY='G'; M= -25,-253,-242,-252,-259, 109,-248,-264,-247,-261,-251,-228,-245,-244,-254,-226,-244, -70,-251,-254;
/M: SY='Q'; M=  11,-249,  22,  16, -24, -56, -29, -11, -27, -67, -49,  41, -79,  55, -71,  27,  12,  22, -10,-240;
/M: SY='F'; M=  22,-247, -67,   2,  41,  14,-239, -44,-238, -26,  39,  36,   7,   8,-243,  18,  31, -13,-250,-234;
/M: SY='S'; M=  42,-245, -31,-239,  22,  16, -53, -58,-239, -53,  32, -36,  22, -57, -77,  67,  -9, -42,-250, -24;
/I:         E1=0; IE=-255; DE=-255;
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_10 which contains 546'790 sequence entries.


Total number of hits 17 in 17 different sequences
Number of true positive hits 17 in 17 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Feature key [info] MOTIF
Feature description [info] TFG box
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
17 sequences

DCP5L_ARATH (Q9FH77), DCP5_ARATH  (Q9C658), L14AA_XENLA (A0A8M2), 
L14AB_XENLA (Q8AVJ2), L14BA_XENLA (Q68FI1), L14BB_XENLA (Q498K9), 
LS14A_BOVIN (Q3MHF8), LS14A_HUMAN (Q8ND56), LS14A_MOUSE (Q8K2F8), 
LS14A_PONAB (Q5R4R4), LS14A_XENTR (Q6NVR8), LS14B_HUMAN (Q9BX40), 
LS14B_MOUSE (Q8CGC4), LS14B_XENTR (Q566L7), LSM14_PLEWA (Q9YH12), 
SCD6_YEAST  (P45978), SUM2_SCHPO  (Q9HGL3)
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