PROSITE entry PS51641
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General information about the entry
| Entry name [info] | AGENET_LIKE |
| Accession [info] | PS51641 |
| Entry type [info] | MATRIX |
| Date [info] |
01-MAR-2012 CREATED;
01-MAR-2012 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC51641 |
| Associated ProRule [info] | PRU00973 |
Name and characterization of the entry
| Description [info] | Agenet-like domain profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=53; /DISJOINT: DEFINITION=PROTECT; N1=6; N2=48; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=3.1074364; R2=0.0082990; TEXT='NScore'; /CUT_OFF: LEVEL=0; SCORE=1072; N_SCORE=12.0; MODE=1; TEXT='R'; /CUT_OFF: LEVEL=-1; SCORE=301; N_SCORE=5.6; MODE=1; TEXT='RR'; /DEFAULT: M0=-100; D=-200; I=-200; B1=-1000; E1=-1000; MI=-505; MD=-505; IM=-505; DM=-505; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; BI=-505; BD=-505; /M: SY='D'; M= -36, -81, 62, -33,-226,-234,-222, -83, -77, 33, 33, -28, -82, 10, -57, -39,-116, -99,-245, -71; /M: SY='E'; M= -25,-238, -26, 64,-132,-234,-223,-232, -5, -43, -48, -80, -26, -60, -11, -7, 18, -40,-244, -73; /M: SY='V'; M= -77,-105,-246,-240,-218,-105,-247, 6,-238, -66, -53,-241, -36, -93,-240,-113,-216, 87,-249,-226; /I: I=-11; MI=0; MD=-29; IM=0; DM=-29; /M: SY='E'; M=-226,-245, 8, 95,-105,-239,-219,-122, -71, -45,-234,-220, -53, -60,-106,-114,-225,-238, -33,-235; D=-11; /I: I=-11; MI=0; MD=-29; IM=0; DM=-29; /M: SY='V'; M= 1,-228,-239, -96,-219, -70, -80, -19,-233,-134,-207,-235, -8,-234,-236, -89,-107, 87,-246,-225; D=-11; /I: I=-11; DM=-29; /M: SY='Y'; M=-130, -3, -52, 2, 35,-100, -64, -82,-115, -25, -61,-224,-102,-215, 53, -5,-222,-223,-212, 78; D=-11; /I: I=-11; DM=-29; /M: SY='S'; M= -70, -77, -8,-110, -56, 25, -27,-225,-222, -25, -4, -30,-229, -13,-226, 54, 25, -47, 24, -8; D=-11; /I: I=-11; DM=-29; /M: SY='R'; M= -36,-255,-239, -70,-247,-248,-234, -69, 18,-245,-238,-234, -14, -32, 63, -39,-236, -22,-250, -30; D=-11; /I: I=-11; DM=-29; /M: SY='A'; M= 33, -59, -20, -16, -37, -52,-224, -29, -18, -37,-219, -5, -36, 8,-221, 32, 6, -15,-239,-225; D=-11; /I: I=-11; DM=-29; /M: SY='N'; M= -52,-231, 23, -62,-236, -9, -3, -44, -39,-237,-227, 92,-106, -7, -72, -37, -15, -72,-249, -78; D=-11; /I: I=-11; MI=0; MD=-29; IM=0; DM=-29; /M: SY='D'; M= -58, -59, 43, 28, -85, -94, -59,-260,-239, -61, -40, 3, -58,-235,-246, -42,-242,-258,-273,-254; D=-11; /I: I=-11; MI=0; MD=-29; IM=0; DM=-29; /M: SY='Q'; M= -65,-251, 13, -16, -85,-242, -8,-247, -6, -52,-239, 0,-244, 37, -21, -12, -5,-108,-256, -60; D=-11; /I: I=-11; DM=-29; /M: SY='E'; M= -36,-256,-222, 62, -87, -75, -3, -55, -41, -43,-240, -35, 20,-222, -68,-235,-237,-244, -32, -73; D=-11; /I: I=-11; DM=-29; /M: SY='P'; M= -16,-256,-242, -30,-249, -91,-246, -35,-240, -31,-236,-117, 78,-240,-249,-234, 1, -70, -32,-249; D=-11; /I: I=-11; DM=-29; /M: SY='C'; M= -10, 91, -74,-147, -15, 51, -31,-234, -87, -60, -12, -83, 3,-228, -58, -20,-115,-138, 0, -46; D=-11; /I: I=-11; DM=-29; /M: SY='A'; M= 55, 40, -85, -71, -37, 44,-229, -33, -73, -48,-119,-217, -76, -49,-229, -1, -72, -85,-235,-228; /M: SY='W'; M=-232, -38,-251,-238, 44, -83,-241, -62,-231, -80,-223, -53,-239,-232,-233, -99,-236, -61, 156, 26; /M: SY='W'; M= -64,-158,-242,-109, -4,-106, -77,-120,-108, -82,-221,-107, -99, -20, -54, -56,-126, -82, 146, 77; /M: SY='P'; M=-100, -51,-222, -35,-142,-130, -61, -92, 54, 10, -66,-176, 73, 10, -23, -80, -35, -43, -33,-225; /M: SY='A'; M= 69, 18,-225,-226,-237, 64,-229,-234,-225,-233,-226,-215,-227,-222,-230, -95,-148,-186,-234,-233; /M: SY='F'; M=-222, -41,-224, -30, 54,-175, -38, -21, 46, -98, -69,-219,-231, -20, 45, -25, -47, 6,-222, -5; /M: SY='V'; M=-216,-230,-243,-239,-211,-104,-244, 66,-235,-110,-115,-236,-236,-236,-238,-228,-213, 81,-240, -72; /M: SY='K'; M=-214,-225, -46,-208,-213, -78, -13, -73, 69, 41,-202,-210,-223,-204, 35, -42, 18, 1,-228,-213; /M: SY='M'; M= -37, -45, 59, -23,-216,-219, -35,-208, 32, 21, 82, -17,-220,-205, -65, 18, -9,-121,-232,-213; /M: SY='I'; M=-212, 8,-233,-228, 54,-115,-226, 58, -72, -19, 33,-224,-229,-224, -25, -15, -99, 56, -9,-200; /M: SY='H'; M= -67,-229, -33,-205, -16, -17, 86, 39, 61, -67, -40, -26,-221, 10, 22, -74,-212,-210,-228, -66; /M: SY='G'; M= -17,-226, 19, 46,-231, 68,-214,-233, -38,-231,-224,-123, -81, -70,-215, 42, -35,-227, 24,-222; /I: I=-39; MI=0; MD=-99; IM=0; DM=-99; /M: SY='D'; M= -71, -29, 91, 49,-237, 8, -58,-235,-202,-231,-225,-100,-216, 64,-208, -34,-210,-231,-238,-221; /I: I=-48; MI=0; MD=-120; IM=0; DM=-120; /M: SY='F'; M=-121, -25, -65, -24, 98, -14,-216, -9,-220, -43, -31, -62,-227, -62,-222, 40, -14, -47,-206, -16; /M: SY='Y'; M= 25, 20,-227,-224, 19,-226, -24, 29,-221, -3,-197,-223,-230, -58,-221, -82,-210, 28,-203, 93; /M: SY='V'; M= -11,-219,-222,-218, -15,-226, 34, -4, -30, -23,-199,-215,-223, -53, -24, -45, 52, 71,-230, -22; /M: SY='V'; M=-105, -14,-234,-229,-202,-236,-234, 76,-225, -76,-190,-227,-227,-226, -69,-218,-204, 88,-231,-210; /M: SY='E'; M= 17,-224, 19, 83, -37,-219, -69, -76, 7, -48,-213, -50,-212, -50, -20, -31, -8, 4,-229, -74; /M: SY='Y'; M=-218,-223,-226,-225, 88,-228, -34,-196, -70, -20,-198, -64,-232,-220,-218, -26,-212, 22,-191, 101; /M: SY='A'; M= 60, -1, 0, 56,-220, -71,-212, -42, -41, -23, -4, 3, -66, -20,-211, -72, -8, -1,-229, -58; /M: SY='N'; M= 61, 11, -7, -40, -58, 37, -44,-219,-210,-222,-215, 74,-220,-208,-216, -42, -94, -17,-230, -30; /M: SY='C'; M=-211, 99, 20,-104, 2, -43,-212,-217, -81, -35,-214, 67, 11,-213, -18, -6, -2, -33, 70, -53; /I: I=-14; MD=-37; /M: SY='D'; M=-232,-247, 76, 21, -6, -36, 11,-241,-224, -23,-235, -88, -8, -19,-230, -69,-227,-241,-252,-229; D=-14; /I: I=-14; MI=0; MD=-37; IM=0; DM=-37; /M: SY='W'; M= 53,-229, -68, 13,-213,-215,-225,-223, -41,-111, -59, -6, 6,-211,-218, -1, -4,-220, 132, -55; D=-14; /I: I=-14; MI=0; MD=-37; IM=0; DM=-37; /M: SY='Q'; M= 3,-222, -72, -6,-225,-215, -26, -39, -69, -91,-211, -2, -22, 82, -40, 10, 75,-212,-231, -69; D=-14; /I: I=-14; DM=-37; /M: SY='Y'; M= -85,-229,-211, 19, 16,-222, 11, -30, -6, -95, -1, -34, 64, 5, -75, -37, -26, -45,-202, 95; /M: SY='N'; M=-208, -31, 25, 51,-224,-212,-204,-103, -70,-221, -5, 82, 27,-200,-209, -25, 55, -32, -18,-219; /M: SY='E'; M= -76,-228, 49, 79,-227,-221, 24, -33, -43, -85, -41,-200,-213, -51, 62, -10, -29,-220,-232,-215; /M: SY='I'; M=-212,-227,-220, -55, -81,-229,-218, 86, 10, 4,-192, -62,-221, 73, -42, -74, -78, -23, -8,-207; /M: SY='V'; M=-206, 3, -63,-227, 32,-233,-229, 46,-224, -83, -86,-225,-228,-226,-226,-217, -60, 91,-223, -2; /M: SY='P'; M= -36,-224, -62, 42,-226, -24,-214,-219, -39, -70,-215, -53, 88,-205,-213, 5, 69,-215,-231,-222; /M: SY='F'; M= -86,-223, -88,-221, 87, -81,-216, 47, -3, 23, -33,-220, -25,-218, 21, -59, -65, -84,-206, -12; /M: SY='E'; M= -29,-225, 15, 74, -60, 26, 70,-134, -12,-224,-217, 28,-213, -33,-205, 10,-206, -39,-232,-213; /M: SY='R'; M= -40,-228, 48, 18,-223,-218, -1, -32, -25,-103,-214, 15,-219, 31, 83, -12, -62, -73,-228, -17; /M: SY='L'; M=-105, -1,-232,-226,-196,-233,-225, 33,-225, 68,-184,-227,-229,-222,-225, -25,-206, 64,-226,-206; /M: SY='R'; M=-217,-232,-214,-202,-223,-227, -55,-228,-175, -48,-211,-207,-225,-191, 122,-211,-215, -76, -54,-211; /M: SY='P'; M= -35,-222,-221,-214, 35,-220,-214, -55, -82, 47, 18,-215, 60, -16, -3, 44, -19, -71,-220,-205; /M: SY='P'; M= -21,-227,-220, -91,-218, -72,-221, -42, 1, -16,-205,-219, 97,-214, -19, -31, -67, 55,-230,-220; /I: E1=0; IE=-505; DE=-505;» more |
Numerical results [info]
| Total number of hits | 38 in 19 different sequences |
| Number of true positive hits | 38 in 19 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 2 |
| Scaling database [info] | reversed |
| Author [info] | CJA_Sigrist |
| Feature key [info] | DOMAIN |
| Feature description [info] | Agenet-like |
| Version [info] | 2 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
19 sequences
FMR1A_XENLA (P51113), FMR1B_XENLA (Q2KHP9), FMR1_DROME (Q9NFU0), FMR1_HUMAN (Q06787), FMR1_MOUSE (P35922), FMR1_PONAB (Q5R9B4), FMR1_RAT(Q80WE1), FMR1_XENTR (Q6GLC9), FXR1A_XENLA (P51115), FXR1B_XENLA (Q7ZTQ5), FXR1_BOVIN (Q2TBT7), FXR1_CRIGR (O70523), FXR1_DANRE (F1QLR3), FXR1_HUMAN (P51114), FXR1_MOUSE (Q61584), FXR1_RAT(Q5XI81), FXR1_XENTR (Q5BJ56), FXR2_HUMAN (P51116), FXR2_MOUSE (Q9WVR4)» more
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| PDB [Detailed view] |
7 PDB
2BKD; 3H8Z; 3KUF; 3O8V; 4OVA; 4QVZ; 4QW2 |