Entry: PS51645

Forthcoming changes to the profile format
General information about the entry

Entry name [info] PHR_CRY_ALPHA_BETA
Accession [info] PS51645
Entry type [info] MATRIX
Date [info] MAY-2012 (CREATED); OCT-2013 (DATA UPDATE); JUL-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC51645
Associated ProRule [info] PRU00976

Name and characterization of the entry

Description [info] Photolyase/cryptochrome alpha/beta domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=130;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=125;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.1864769; R2=0.0075523; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=-45166.929688; R2=80.843254; TEXT='HScore';
/CUT_OFF: LEVEL=0; SCORE=969; N_SCORE=9.5; H_SCORE=33089; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=572; N_SCORE=6.5; H_SCORE=995; MODE=1; TEXT='?';
/DEFAULT: M0=-23; D=-150; I=-150; B1=-1000; E1=-1000; MI=-380; MD=-380; IM=-380; DM=-380;
...
                A    C    D    E    F    G    H    I    K    L    M    N    P    Q    R    S    T    V    W    Y
/I:         B1=0; BI=-380; BD=-380;
/M: SY='M'; M=  -8, -49, -10, -17, -68,  -9, -11, -42,  31, -74,  60,   3,  12,  -8,   6,  14,  -3, -45, -98, -83;
/M: SY='M'; M= -20, -12, -67, -79, -34, -34,  -5,  15,   3, -25,  44,   4,  29, -64,  12, -22,  27,  10, -88,  26;
/M: SY='V'; M=  11, -26, -61, -69, -58, -12,  -6,  13, -40, -13, -40,  27, -87,   1, -34,  12,  19,  45, -96, -38;
/M: SY='I'; M= -30, -74, -98, -92, -49, -57, -22,  56, -91,  55, -12, -93, -94, -87, -91, -86, -73,  44, -63, -43;
/M: SY='Y'; M= -54,  -5, -92, -89,  32, -95,  45,   4, -86,   3,  17, -87, -94, -84, -85, -72, -65,  55,  40,  70;
/M: SY='W'; M= -88,-108,-113, -95,  -9, -73,-109,  -7, -88,  -6, -40,-106, -94, -87, -91, -83, -95, -43, 168, -31;
/M: SY='F'; M= -63, -18, -97, -92,  98, -87,  23, -19, -80,  18,  60, -77, -76, -89, -32, -75, -58, -43, -67, -20;
/M: SY='R'; M= -68, -74, -49, -51, -80, -49, -18, -57,  27, -58, -32,   0, -67,  26,  93, -14, -12, -70, -33, -40;
/M: SY='R'; M= -30, -64,  -2, -47, -64, -42,  14, -92,  10, -70, -60,  46, -86,  20,  83,  -5, -15, -71, -52, -64;
/M: SY='D'; M= -17, -56, 110, -30, -99, -32, -28, -95, -70, -95, -66,  -3, -82, -59, -78, -18, -58, -51,-112, -67;
/M: SY='L'; M= -81, -68, -95, -85,  21, -97, -30, -34, -85,  81,  12, -92, -87,  19, -27, -79, -73, -34, -82, -45;
/M: SY='R'; M= -81, -98, -64, -65, -90, -91, -48, -97, -38, -89, -78, -70, -90, -54, 118, -75, -80, -90, -90, -76;
/M: SY='L'; M= -26, -31, -93, -73,  -9, -69, -64,  39, -87,  55, -22, -87, -91, -75, -79, -40,  19,  39, -88, -45;
/M: SY='H'; M=   5, -66,  24,  13, -24, -41,  86, -31, -19, -49, -61,  13, -70,  18,  17,   3,   4, -41, -96, -28;
/M: SY='D'; M= -61, -95, 114, -26, -63, -73,  -4, -98, -63, -95, -94, -26, -82, -41, -77, -56, -72, -95,  11,  -4;
/M: SY='N'; M= -77, -84, -53, -69, -89, -68,  83, -91, -64, -71, -67, 113, -86,  -4, -69, -29, -65, -93,-110, -76;
/M: SY='P'; M=   9, -77, -43,  12, -35, -60,  28, -47, -21, -36, -50, -58,  84, -15,  -2, -29,  16, -49,  61, -38;
/M: SY='A'; M=  77, -28, -82, -77, -69,  18, -83, -28, -78, -23, -14, -76,  30, -75, -84,  -3, -30, -39, -90, -84;
/M: SY='L'; M= -81, -84, -99, -91,  19,-100, -83, -20, -92,  87, -28, -97, -77, -86, -89, -91, -77, -28, -12, -48;
/M: SY='H'; M=  21, -25,   0,  10,  -2, -69,  50,  -2, -28,   8, -36,  -5, -84,   3, -34,   3,   0, -23,  -7,  33;
/M: SY='H'; M=  43, -76, -19,  24, -19, -57,  52, -74,  -8, -24, -49, -10, -73,  19,  16, -28, -37, -50,  -9,  47;
/M: SY='A'; M=  93, -41, -68, -64, -75, -46, -64, -38, -77, -23, -72, -58, -65, -74, -82, -21, -53, -33, -90, -83;
/M: SY='C'; M=  35,  58, -77, -63, -54, -58,  -8,  26, -58,  20,   2, -39, -80,   4, -32,  17, -22,  14, -47, -34;
/M: SY='Q'; M=  19, -58,  11,  43, -74, -42,   4, -76,  17, -51, -49,  11, -70,  54,  23,   2,  -2, -71, -44, -51;
/M: SY='Q'; M=   7, -42,   8,  11, -45, -37,  26, -29, -15,   5,  -5,  25, -66,  27,  14,  26,  -1, -40, -19, -23;
/M: SY='G'; M=  46,  12,  -1, -21, -48,  46, -10, -66, -27, -55, -62,  -3, -26, -14, -45,  22, -29, -17, -92, -53;
/M: SY='N'; M=  -4, -37,  36,  22, -54, -25, -10, -49,  11, -18, -38,  38,  14,  20,  17,  -9, -20, -40, -31, -29;
/I:         I=-11; MD=-27;
/M: SY='P'; M=  -1, -58,  -4,  23, -69, -36,  -1, -65,  19, -64, -73, -21,  48,  17,  14,  -4,  -6, -42, -98, -57; D=-11;
/I:         I=-11; MI=0; MD=-27; IM=0; DM=-27;
/M: SY='V'; M= -54, -61, -84, -83, -16, -91, -77,  28, -82,  44,  -3, -81, -98, -78, -82, -89, -75,  64, -65, -48; D=-11;
/I:         I=-11; DM=-27;
/M: SY='I'; M= -24, -24, -45, -41,   3, -94,   3,  50, -38,  47, -45, -85, -65, -33, -30, -56, -33,  30, -35,  10;
/M: SY='P'; M=  30,  56, -53, -68, -19, -22, -56, -22, -70, -17, -47, -71,  85, -63, -71, -52, -19,  22, -92, -83;
/M: SY='V'; M= -19,  38, -88, -90,   6, -95, -57,  30, -80,  45, -36, -77, -93, -87, -89, -68, -45,  63, -29, -24;
/M: SY='Y'; M= -66, -50, -90, -54,  89, -81,  -7, -38, -84, -37, -54, -75, -84, -53, -82, -78, -62, -16,   8,  99;
/M: SY='C'; M= -37,  74, -80, -90,   5, -46, -19,  59, -87,  -2, -40, -21, -69, -60, -90, -55, -18,  52, -33, -37;
/M: SY='F'; M= -15, -62, -55, -72,  66, -78,  19,  22, -75,  42,  -5, -67, -81, -40, -40, -57, -61,   7,  45,  14;
/M: SY='D'; M= -34,   8,  85,  34, -67, -56, -22, -39, -62, -62, -69,  14,  10, -34, -46,  -5,  18, -28,-103, -72;
/M: SY='P'; M= -30, -55,  18,  19, -79, -52, -22, -55, -11, -61, -53, -37, 101, -18, -13, -21,  -7, -61, -94, -65;
/M: SY='R'; M=   1, -54,  22,  26, -41, -15,   3, -44,  17, -36, -18,  10, -33,  23,  32,  10,  -7, -32,  11, -21;
/M: SY='Q'; M= -34, -47,   5,   7,  28, -57,  17,   9, -33,   4, -21, -26, -29,  62, -31, -20, -10, -22,  27,  32;
/I:         I=-11; MD=-29;
/M: SY='W'; M= -14,   0, -34, -18,  30, -54, -30,   7, -33,  22,   3, -38,  21, -30, -33, -22, -19, -19,  95,  13; D=-11;
/I:         I=-11; MD=-29;
/M: SY='Q'; M=   3, -69,  19,  21, -17,  17,  10, -42,   9, -37, -32,  10, -64,  23,   8, -11,  -8, -50,  -3,   4; D=-11;
/I:         I=-11; MD=-29;
/M: SY='P'; M=   2, -36,   7,  -2, -45, -24,  -4, -43, -16, -30, -66,  -3,  22,  21,  -7,  -1, -15, -57,   1, -12; D=-11;
/I:         I=-11; MD=-29;
/M: SY='H'; M= -29,-104,  -2, -40, -26, -34,  65, -86, -33, -31, -58,  -2,  30, -34, -18,  -1, -11, -84,   6, -39; D=-11;
/I:         I=-11; MD=-29;
/M: SY='H'; M= -28, -81,  23, -13, -51, -12,  29, -78, -16, -55, -28,   2,   5, -35,  -5,  -7, -32, -68,   0, -42; D=-11;
/I:         I=-11; MI=0; MD=-29; IM=0; DM=-29;
/M: SY='M'; M=  26,  13, -22, -21,  -2, -33,  -5,  -8, -10,   2,  42, -30,   6, -26, -27,  -5,  22,   3,   1,   8;
/M: SY='G'; M=  14, -12, -17, -28, -72,  61, -16, -67, -53, -80, -56,  25, -29, -28, -37,  51,   2, -73, -92, -52;
/M: SY='P'; M=  21, -55,  35,  13, -76,  -3, -33, -35,  -3, -24, -54, -20,  60, -10,  -7,  -3, -11, -24, -66, -12;
/M: SY='R'; M=  34, -31, -69, -46, -11, -58,  41, -12, -17, -39, -16,  19,  -3,  -5,  68, -32, -48, -18,  -2, -15;
/M: SY='R'; M= -17, -24, -66, -60, -43, -67,  74, -54,  21, -61, -48, -16, -46,  47,  77,   8, -54, -69, -43, -43;
/M: SY='W'; M=  17, -34, -66, -45,  15, -53,  33,   3,  -6,   2, -25, -37, -78,  12,  26, -44, -28,  16,  82,  24;
/M: SY='W'; M=  10, -67,  28,  -3, -77, -20,  -3, -55,   8, -49, -45,   1, -74,  38,  48, -12,  -3, -37,  86, -38;
/M: SY='F'; M= -42, -60, -79, -93, 108, -89, -55, -51, -88, -13, -65, -90, -96, -81, -50, -63, -81, -50,  95,  27;
/M: SY='L'; M= -32, -58, -94, -68,   5, -95, -50,  39, -54,  61,  57, -89, -91, -48, -29, -74, -45,  10,  14,  -8;
/M: SY='H'; M=  -6, -12, -54, -41,  15, -52,  63,  12, -18,  43, -10, -28, -88,  -2,  -7, -26, -59, -27,  32,  27;
/M: SY='E'; M= -12, -92,  23,  69, -72, -17,  32, -83,  -9, -54, -63, -14, -77,  64,  28, -25, -64, -87, -92, -54;
/M: SY='S'; M=  23,  49, -73, -69, -87,  37,  -3, -81, -58, -77, -80,   4, -65, -20, -33,  69,  14, -51, -44, -75;
/M: SY='L'; M= -37, -53, -96, -89, -42, -97, -84,  16, -80,  78,  14, -93, -80, -71, -63, -86, -67,  32, -86, -68;
/M: SY='Q'; M=  22, -27,  -6,  25, -66, -56,  -1, -16,  25, -21, -22,  -2, -43,  40,  27,  -5,  -7, -13,   3, -36;
/M: SY='D'; M=  19, -17,  72,  42, -71, -48,   1, -60, -16, -55, -81,  18, -64,  21, -29,   7, -46, -32, -98, -44;
/M: SY='L'; M= -53, -82, -94, -77,  20, -96, -63,  -1, -81,  80,   9, -33, -65, -84, -87, -74, -33,   7, -82, -53;
/M: SY='Q'; M=   8, -52,  41,   4, -78, -27,  10, -40,  31, -78, -45,  26, -80,  45,  40,   5, -32, -59, -28, -46;
/M: SY='Q'; M=   8, -42,   9,  39, -65, -26,  -3, -47,  32, -44, -66,  10, -47,  53,  22,   5,   3, -65, -91, -63;
/M: SY='Q'; M=   7, -86,  17,  37, -71, -45, -24, -81,  13, -58, -30,  25, -68,  51,  18,  40,  -1, -67, -57, -66;
/M: SY='L'; M= -29,  15, -96, -89, -14, -96, -81,   0, -89,  83,  -9, -93, -95, -72, -87, -86, -53, -32,  -9,   6;
/I:         I=-25; MD=-63;
/M: SY='R'; M=  32, -62, -21,  25, -58, -35,  -1, -56,  30, -54, -38,   5, -60,  29,  46,   2, -30, -50, -92, -62; D=-25;
/I:         I=-25; MD=-63;
/M: SY='E'; M=  20, -89,   9,  43, -82, -26, -30, -72,  41, -45, -38, -12, -40,  34,  13,   4,  -7, -72, -93, -71; D=-25;
/I:         I=-25; MD=-63;
/M: SY='L'; M= -31, -35, -60, -32, -21, -88,  22,   0,   5,  51,  -5, -42, -91, -16,  48, -52, -44, -30, -66,  -1; D=-25;
/I:         I=-25; MI=0; MD=-63; IM=0; DM=-63;
/M: SY='G'; M= -56, -65,   1, -28, -94,  82,   5, -98, -21, -84, -85,  56, -32,   0, -36, -27, -74, -94, -92, -86;
/M: SY='I'; M=  -4, -59, -78, -80, -45,  21, -10,  60, -58, -11, -31, -47, -83,  19, -45,  41, -18,  11, -63, -52;
/M: SY='P'; M= -19, -37,  24,   5, -69,  -8,  14, -72,  13, -65, -64,   5,  65,  12,  36,   0,   3, -60, -93, -60;
/M: SY='L'; M= -68, -83, -96, -82,  38, -97, -63,  -5, -89,  80, -17, -93, -36, -73, -66, -76, -49, -18, -56,   3;
/M: SY='H'; M= -24, -19, -53, -40,  14, -78,  47,  33, -55,  27,  -8, -26, -55, -23, -32, -35, -14,  28,  32,  43;
/M: SY='V'; M= -36,   5, -84, -59,   4, -95, -64,  46, -67,  29,  -5, -87, -30, -58, -81, -61,  -5,  64, -57,  -1;
/M: SY='R'; M= -14, -31, -72, -17,  30, -66,   3,  -2, -22,  35,  -2, -79, -65, -20,  55, -30, -28,   1, -15,  14;
/M: SY='H'; M= -29, -11, -10,  19, -22, -69,  51, -15,  14, -28, -38, -22, -33,  20,  35,  -1,  12,   3, -18,  22;
/M: SY='G'; M= -11,  -1, -10, -10, -46,  82, -26, -49, -53, -59, -53, -40, -38, -30, -51, -13, -33, -15, -57,  -7;
/I:         I=-11; MD=-28;
/M: SY='D'; M= -24, -51,  57,  30, -66, -32,  -3, -61,   6, -60, -57,  21,  24,  -5,  -2,  16,   5, -69, -98, -34; D=-11;
/I:         I=-11; MD=-28;
/M: SY='P'; M=  19, -71,  12, -20, -30, -28, -29, -34, -37, -57, -28, -31,  83, -42, -37,  -3,  15, -24, -21, -61; D=-11;
/I:         I=-11; MD=-28;
/M: SY='E'; M=   0, -39, -11,  34,  12, -31, -28,  -4, -12,  -7, -43, -29,  13, -16, -12, -19,  -8,   7,   1,  -2; D=-11;
/I:         I=-11; MI=0; MD=-28; IM=0; DM=-28;
/M: SY='E'; M=  -3, -68,  54,  57, -84, -25,  -5, -57,  -1, -56, -49,   6, -17,  24,  -9,   1,   5, -31, -71, -65;
/M: SY='V'; M=  14,   1, -34,   2, -26, -56, -33,  30, -35,   0, -32, -39, -74, -10, -18, -13,   5,  53, -31, -20;
/M: SY='L'; M= -32, -67, -84, -90,  33, -80, -87,  50, -88,  60, -18, -91, -56, -86, -60, -69, -50,  32, -22, -63;
/M: SY='P'; M=   5, -44, -10,  21, -43, -34, -24, -24,  13, -13, -24, -23,  67,  14,  -5,   8, -11, -15, -90, -55;
/M: SY='Q'; M=  15, -78,  17,  43, -49, -22,  -6, -74,  21, -59, -36,  -3, -48,  48,  30,   3, -17, -52, -25, -17;
/M: SY='L'; M= -31, -55, -95, -66,  39, -73, -41,  34, -88,  66, -10, -90, -93, -74, -66, -71, -29,   4,  15,  -1;
/M: SY='C'; M=  46,  64, -54, -52,  -8, -70, -12,  26, -20,   4, -22, -63, -77, -28, -39, -14, -13,  27, -39, -62;
/I:         I=-14; MI=0; MD=-36; IM=0; DM=-36;
/M: SY='Q'; M=  -2, -51,  -4,  30, -95, -39,   1, -47,  29, -36, -61,   3, -44,  41,  22,   0, -18, -68, -98, -62; D=-14;
/I:         I=-14; DM=-36;
/M: SY='E'; M=   1, -68,   0,  46, -57, -32, -32, -58,  20, -42, -71,  -5, -69,  43,   8,   7,  -3, -53, -96, -44; D=-14;
/I:         I=-14; DM=-36;
/M: SY='W'; M= -17, -35, -50, -30,   5, -40,  52, -20, -15,   8, -67,  -5, -33,   6, -17, -12,   8,  -5,  64,  51; D=-14;
/I:         I=-14; DM=-36;
/M: SY='G'; M= -35, -90,  30,   2, -66,  49,  20, -94,  21, -67, -54,  42, -13,  29,  -9,  -4, -49, -91, -70, -51; D=-14;
/I:         I=-14; DM=-36;
/M: SY='A'; M=  58, -21, -61, -64, -15, -57, -90,  54, -71, -33, -40, -68, -22, -73, -80, -48, -38,  40,  -3, -57; D=-14;
/I:         I=-14; DM=-36;
/M: SY='T'; M=  11,  -6,  37,   7, -46,  -5,  -6, -52,   1, -55, -68,  14, -64,  11, -12,  29,  40, -32, -96, -68; D=-14;
/I:         I=-14; DM=-36;
/M: SY='H'; M=  39, -12,  -2,   8, -64, -23,  49, -32,  -3, -20, -22, -13, -71,   8,   9,  -3,  11, -10, -49, -25; D=-14;
/I:         I=-14; DM=-36;
/M: SY='V'; M= -57, -62, -88, -91, -32, -99, -94,  49, -90,  35, -26, -92, -73, -75, -91, -83, -64,  77, -92, -60; D=-14;
/I:         I=-14; DM=-36;
/M: SY='Y'; M= -50, -23, -89, -82,  57, -50,  32,   7, -76, -14, -33, -83, -92, -83, -65, -38,   7,  36,  42,  76; D=-14;
/I:         I=-14; DM=-36;
/M: SY='W'; M=  25,  53, -87, -83,  39, -51, -26, -28, -80, -23,  20, -65, -69, -65, -42,   8,  34,   5,  86,  13;
/M: SY='N'; M= -21, -50,  51,  14, -63, -50,  55, -66, -53, -68, -61,  81, -40,   8, -54,  17,  -8, -80,-103, -55;
/M: SY='R'; M=  -1, -56,  -1,  33,  16, -45,  22, -20,  18, -39, -15, -42, -52,  30,  53, -20, -14, -45, -57, -19;
/M: SY='E'; M= -25,  -5,  60,  62, -27, -16,  13, -38, -55, -37, -24, -10, -35,   5,   2,  -2, -42, -44, -69, -28;
/M: SY='Y'; M= -21, -14, -40, -23, -14, -56, -33,   8, -68, -32, -30, -66,  48, -42, -66, -29,  15,   6,  21,  92;
/M: SY='E'; M= -20,   8,   6,  51, -83,  34, -33, -56, -59,   8,   0, -33, -21, -30, -33,  -4,  35, -25, -71, -81;
/M: SY='P'; M= -22, -55, -33, -23,  -3, -12,   4, -15,  -2, -22, -60, -11,  70, -26,  25,   2, -12,  -5,  22,  -2;
/M: SY='Y'; M=  -7, -65,  33,  27,  20, -38,  -2, -10, -35, -27, -45,  30,  13, -29, -42, -36, -26, -33,  31,  62;
/M: SY='E'; M=  21, -55, -26,  66, -26,   2,  10, -38, -34, -29, -66, -28,  -9,   0, -28,   0, -33, -23,  42,  -9;
/M: SY='R'; M= -28, -31, -34, -35, -41, -62, -28,   5,  16,   7, -24, -19, -32,  31,  64, -24,  24, -10, -24, -49;
/M: SY='Q'; M=  10, -33,   4,  32,  -6, -47, -12, -46,  21, -37, -37,   0, -55,  42,  40,  -2, -17, -42, -25,   5;
/M: SY='R'; M= -15, -78, -10,  -4, -22, -49, -36, -22, -29, -23,  -5, -51, -65,  23,  77, -32, -14,  -1,  77, -37;
/M: SY='D'; M= -34, -52,  84,  25, -65, -69, -18, -22, -28, -27, -66, -45, -75,  -3,  33, -42, -20, -12,  17,  -6;
/M: SY='D'; M=  17, -61,  49,  30, -89, -54,  11, -33,  28, -38, -58,  10, -74,  34,  23, -22,  -8, -46, -94, -58;
/I:         I=-26; MI=0; MD=-67; IM=0; DM=-67;
/M: SY='Q'; M=  35, -86,   8,  16, -59, -43,  11, -40,  17, -42, -47,  -1, -71,  44,  37,   0,   0, -41, -47, -28;
/M: SY='V'; M=  -9, -48, -82, -74, -29, -85, -90,  48, -87,  42,  -4, -89, -73, -54, -79, -67, -36,  65, -49, -49;
/M: SY='K'; M=  32, -28, -39,  17, -56, -41, -19, -24,  44, -28, -19, -20, -62,  26,  31, -13, -14, -11, -20, -22;
/M: SY='K'; M=  20, -51,  14,  31, -90, -31,  -4, -75,  45, -59, -51,   2, -40,  36,  19,  19,  -7, -57, -92, -62;
/M: SY='W'; M=  32, -30, -39,   2,  11, -39, -19, -10,   6,  -2,  -7, -24, -59,  12,  19,  -3, -14,  -7,  62, -22;
/I:         I=-17; MD=-42;
/M: SY='L'; M=  -6,  60, -84, -93,  28, -74, -67,  -4, -85,  60, -19, -71, -75, -76, -92, -66, -41,  -9,   9, -21; D=-17;
/I:         I=-17; MI=0; MD=-42; IM=0; DM=-42;
/M: SY='K'; M= -14, -43,  13,  16, -77, -65,   1, -71,  25, -54, -89,  14, -39,  18,   7,   1, -10, -59, -11, -67; D=-17;
/I:         I=-17; DM=-42;
/M: SY='C'; M=   8,  43,  10,  21, -82, -18, -40, -32,  14, -58, -56,  -8, -40,  13,   2,  -8, -13, -15,-102, -79; D=-17;
/I:         I=-17; DM=-42;
/M: SY='H'; M=  -4, -47, -13,   1, -48, -38,  36, -41,   8, -23, -31,  12,  25,  34,  24,  -3,  -9, -63, -61, -16; D=-17;
/I:         I=-17; DM=-42;
/M: SY='G'; M= -24, -30,   8, -15, -12,  61, -16, -34, -26, -24, -26,  19, -30,   1, -28, -21, -36, -12, -52, -43; D=-17;
/I:         I=-17; DM=-42;
/M: SY='I'; M= -31, -23, -49, -12, -31, -74,   0,  59, -24,   6, -27, -36, -51, -27, -22, -47, -15,  43, -42,   4; D=-17;
/I:         I=-17; DM=-42;
/M: SY='Q'; M=   4, -28,  12,  38, -44, -30,   5, -36,  11, -52, -45,  12,  11,  40,  11,  -2,  10, -38, -15, -59; D=-17;
/I:         I=-17; DM=-42;
/M: SY='V'; M= -20,   6, -73, -83,  41, -66, -36,  34, -75,   7, -30, -78, -72, -77, -64, -49, -12,  63,  54, -19; D=-17;
/I:         I=-17; DM=-42;
/M: SY='H'; M= -56, -38,  45,  27, -42, -58,  52, -21,  18, -51, -66, -11,  11,  22,  15,  -8,  -2,  -8, -37, -10;
/M: SY='S'; M=  14,  10, -41,   9,  14,  -5, -33, -42, -41,   4, -32, -22, -37,  -8, -27,  35,  31, -13,  26, -13;
/M: SY='H'; M= -49, -11, -25, -42,  60, -37,  66, -19, -37, -13, -56,  18, -58, -18, -19, -13, -13,  -1,  41,  47;
/M: SY='N'; M= -12,  -1,  14,  11, -40, -15,  31, -51, -15, -35, -17,  44,  25,  19,   2,   1, -10, -10,  42, -25;
/M: SY='D'; M=  -5, -18,  46, -31,   8,  23, -33,   4, -62, -15, -25, -13, -22,  -3, -56,  14,  -2,  18, -36, -29;
/M: SY='H'; M= -32, -51,  28,  -6, -15, -31,  70, -33, -16, -35, -54,  36,  -2,  25,  -9,   3, -20,  14, -27,   1;
/M: SY='P'; M= -20,  12,  13, -30, -39, -12,  24, -40, -36,  17, -41, -26,  54, -12, -50,  -7,  37,  -2, -91,  -4;
/M: SY='L'; M= -24,  23, -54, -52,  -6, -66, -19,  22, -54,  54,   1, -56, -38, -45, -39, -22, -18,  27, -25,  17;
/I:         E1=0; IE=-380; DE=-380;
» More

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_09 which contains 546'439 sequence entries.


Total number of hits 59 in 59 different sequences
Number of true positive hits 59 in 59 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Feature key [info] DOMAIN
Feature description [info] photolyase/cryptochrome alpha/beta
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
59 sequences

CRY1_AEDAE  (Q17DK5), CRY1_ANOGA  (Q7PYI7), CRY1_ARATH  (Q43125), 
CRY1_CHICK  (Q8QG61), CRY1_DROME  (O77059), CRY1_DROPS  (Q293P8), 
CRY1_ERIRU  (Q5IZC5), CRY1_HUMAN  (Q16526), CRY1_MACFA  (Q8WP19), 
CRY1_MOUSE  (P97784), CRY1_RAT    (Q32Q86), CRY1_SINAL  (P40115), 
CRY1_SPAJD  (Q70AD6), CRY1_SYLBO  (Q6ZZY0), CRY2_ARATH  (Q96524), 
CRY2_CHICK  (Q8QG60), CRY2_HUMAN  (Q49AN0), CRY2_MOUSE  (Q9R194), 
CRY2_RAT    (Q923I8), CRY2_VIBCH  (Q9KS67), CRYD_ARATH  (Q84KJ5), 
CRYD_DANRE  (Q4KML2), CRYD_GIBZE  (Q4I1Q6), CRYD_GLOVI  (Q7NMD1), 
CRYD_IDILO  (Q5QXE0), CRYD_NATPD  (Q3IPX9), CRYD_NEUCR  (Q7SI68), 
CRYD_ORYSJ  (Q651U1), CRYD_OSTTA  (Q5IFN2), CRYD_RHOBA  (Q7UJB1), 
CRYD_SOLLC  (Q38JU2), CRYD_SYNY3  (P77967), CRYD_VIBCH  (Q9KR33), 
CRYD_VIBPA  (Q87JP5), CRYD_XENLA  (Q75WS4), PHR2_ARATH  (Q8LB72), 
PHR_ARATH   (Q9SB00), PHR_BACPE   (Q04449), PHR_BUCAI   (P57386), 
PHR_BUCBP   (Q89AJ9), PHR_CARAU   (P34205), PHR_ECOLI   (P00914), 
PHR_HALSA   (Q9HQ46), PHR_METTH   (P12769), PHR_METTM   (P58818), 
PHR_NEUCR   (P27526), PHR_ORYSJ   (Q6F6A2), PHR_POTTR   (Q28811), 
PHR_SALTY   (P25078), PHR_STRGR   (P12768), PHR_SYNP6   (P05327), 
PHR_SYNY3   (Q55081), PHR_THET2   (P61496), PHR_THET8   (P61497), 
PHR_VIBCH   (Q9KNA8), PHR_YEAST   (P05066), UVR3_ARATH  (O48652), 
UVR3_ORYSJ  (Q0E2Y1), YAT1_SYNP1  (Q05380)
» More

PDB
[Detailed view]
30 PDB

1DNP; 1IQR; 1IQU; 1NP7; 1OWL; 1OWM; 1OWN; 1OWO; 1OWP; 1QNF; 1TEZ; 1U3C; 1U3D; 2IJG; 2J07; 2J08; 2J09; 2J4D; 2VTB; 3FY4; 3UMV; 4CT0; 4GU5; 4I6E; 4I6G; 4I6J; 4JZY; 4K03; 4K0R; 4MLP
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View entry in raw text format (no links)
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