Entry: PS60004

General information about the entry
Entry name OMEGA_CONOTOXIN
Accession number PS60004
Entry type PATTERN
Date OCT-2004 (CREATED); OCT-2004 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC60004
Name and characterization of the entry
DescriptionOmega-conotoxin family signature.
Pattern C-[SREYKLIMQVN]-x(2)-[DGWET]-x-[FYSPKV]-C-[GNDSRHTP]-x(1,5)-[NPGSMTAHF]- [GWPNIYRSKLQ]-x-C-C-[STRHGD]-x(0,2)-[NFLWSRYIT]-C-x(0,3)-[VFGAITSNRKL]- [FLIKRNGH]-[VWIARKF]-C.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 61 hits in 61 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 53 hits in 53 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 8 hits in 8 different sequences
  • Number of known missed hits: 3
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 86.89 %
  • Recall (true hits / (true hits + false negatives)): 94.64 %
Comments
  • Taxonomic range: Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • `Interesting' site in the pattern: 1,disulfide
  • `Interesting' site in the pattern: 7,disulfide
  • `Interesting' site in the pattern: 13,disulfide
  • `Interesting' site in the pattern: 14,disulfide
  • `Interesting' site in the pattern: 18,disulfide
  • `Interesting' site in the pattern: 23,disulfide
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
CO111_CONTE (Q9U648), CO112_CONST (Q5K0D6), CO115_CONST (Q5K0D5), 
CO12A_CONPL (Q9XYZ1), CO12_CONIM  (Q5K0B9), CO12_CONST  (Q5K0D8), 
CO12_CONTE  (Q9XZK9), CO13_CONIM  (Q5K0C0), CO13_CONST  (Q9XZK2), 
CO13_CONTE  (Q9XZL0), CO14_CONST  (Q9XZK3), CO14_CONTE  (Q9XZL1), 
CO15B_CONTE (Q9U654), CO15_CONST  (Q9XZK4), CO15_CONTE  (Q9XZL2), 
CO161_CONST (Q9XZL4), CO161_CONTE (Q3YEF3), CO162_CONST (Q9XZL5), 
CO164_CONAH (P0C8V8), CO164_CONVC (P69761), CO165_CONAH (P0C8V9), 
CO166_CONST (P0C831), CO167_CONMR (Q3YED6), CO16A_CONCT (P58917), 
CO16A_CONGE (P01522), CO16A_CONPL (Q9XYZ0), CO16A_CONST (P28880), 
CO16B_CONST (P28881), CO16D_CONCT (P58920), CO16_CONST  (Q5K0D3), 
CO16_CONTE  (Q9XZL3), CO17A_CONMA (P05484), CO194_CONTE (Q9U647), 
CO19_CONST  (Q5K0D2), CO1X1_CONTE (Q9XZK8), CO6A_CONPE  (P56712), 
CO6A_CONRA  (P58914), CO6A_CONTU  (P58915), CO6B_CONCT  (P58918), 
CO6B_CONPE  (P56713), CO6C_CONCT  (P58919), CO7AB_CONGE (P05483), 
CO7A_CONCN  (P58916), CO7B_CONMA  (P05485), CO7C_CONMA  (P37300), 
CO7D_CONMA  (Q26350), CO7_CONTE   (P56714), CO8_CONBU   (P0CY66), 
O1618_CONAE (Q9BP78), O162_CONAE  (Q9BH84), O163_CONAE  (Q9BP99), 
O164_CONTE  (Q9U645), O168_CONVE  (Q9BPA5)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
CO141_CONTE (Q9U651), CO142_CONTE (Q9U650), CO67_CONST  (P0C832)
False positive hits (sequences which do not belong to the set under consideration):
CO163_CONAH (P0C8V7), CO16E_CONST (Q9XZK5), CO6A_CONCN  (P69750), 
CO6A_CONMA  (P69753), CO6A_CONSE  (P69757), CO6B_CONMA  (P69754), 
CO6C_CONMA  (P69755), CO6D_CONMA  (P69756)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

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PDB
[Detailed view]		 1CNN; 1DW4; 1DW5; 1F3K; 1FEO; 1FYG; 1MVI; 1MVJ; 1OMG; 1OMN; 1TT3; 1TTK;

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