Entry: PS60030

General information about the entry

Entry name [info] BACTERIOCIN_IIA
Accession [info] PS60030
Entry type [info] PATTERN
Date [info] MAR-2006 (CREATED); MAR-2006 (DATA UPDATE); MAR-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC60030

Name and characterization of the entry

Description [info] Bacteriocin class IIa family signature.
Pattern [info]

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_04 which contains 550'960 sequence entries.

Total number of hits 23 in 23 different sequences
Number of true positive hits 23 in 23 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 5
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 82.14 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

True positive sequences
23 sequences

BACT_LACSP  (P86291), BAVM_LACSK  (P80493), BCN80_BACCI (P86394), 
CBB1_CARML  (P38579), CBB2_CARML  (P38580), DIV35_CARDV (P84962), 
ETCHF_ENTFC (P86183), ETCM_ENTFC  (P85876), ETCP_ENTFC  (O30434), 
HJM79_ENTHR (Q0Z8B6), LCCA_LEUGE  (P34034), LCCB_LEUCA  (Q53446), 
LCCC_LEUME  (P81053), LCNM_LACLL  (P83002), MTCY_LEUME  (P38577), 
MUTI_ENTMU  (P80925), PIS1_CARML  (P80569), PPA1_PEDAC  (P29430), 
SAKA_LACCU  (P0A311), SAKA_LACSK  (P0A310), SAKP_LACSK  (P35618), 
» more

False negative sequences
5 sequences

BACT_STRMG  (P86386), BCN02_PAEPO (P86393), BCN37_PAEPO (P86395), 
CURVA_LACCU (P84886), ETC50_ENTFC (P85148)
» more

'Partial' sequences
1 sequence

BAVA_LACSK  (P80953)

[Detailed view]
10 PDB

1CW5; 1CW6; 1OG7; 1OHM; 1OHN; 1RY3; 2A2B; 2LEU; 2N4K; 3LEU

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