Entry: PS60030

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General information about the entry

Entry name [info] BACTERIOCIN_IIA
Accession [info] PS60030
Entry type [info] PATTERN
Date [info] MAR-2006 (CREATED); MAR-2006 (DATA UPDATE); SEP-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC60030

Name and characterization of the entry

Description [info] Bacteriocin class IIa family signature.
Pattern [info]
Y-G-N-G-[VL]-x-C-x(4)-C.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_10 which contains 546'790 sequence entries.


Total number of hits 23 in 23 different sequences
Number of true positive hits 23 in 23 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 5
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 82.14 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
23 sequences

BACT_LACSP  (P86291), BAVM_LACSK  (P80493), BCN80_BACCI (P86394), 
CBB1_CARML  (P38579), CBB2_CARML  (P38580), DIV35_CARDV (P84962), 
ETCHF_ENTFC (P86183), ETCM_ENTFC  (P85876), ETCP_ENTFC  (O30434), 
HJM79_ENTHR (Q0Z8B6), LCCA_LEUGE  (P34034), LCCB_LEUCA  (Q53446), 
LCCC_LEUME  (P81053), LCNM_LACLL  (P83002), MTCY_LEUME  (P38577), 
MUTI_ENTMU  (P80925), PIS1_CARML  (P80569), PPA1_PEDAC  (P29430), 
SAKA_LACCU  (P0A311), SAKA_LACSK  (P0A310), SAKP_LACSK  (P35618), 
UBAA_STRUB  (A9Q0M7), WSNA_WEIPA  (B3A0N4)
» More

UniProtKB/Swiss-Prot
False negative sequences
5 sequences

BACT_STRMG  (P86386), BCN02_PAEPO (P86393), BCN37_PAEPO (P86395), 
CURVA_LACCU (P84886), ETC50_ENTFC (P85148)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
1 sequence

BAVA_LACSK  (P80953)

		
PDB
[Detailed view]
9 PDB

1CW5; 1CW6; 1OG7; 1OHM; 1OHN; 1RY3; 2A2B; 2LEU; 3LEU

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