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Entry: PS60030

General information about the entry

Entry name [info] BACTERIOCIN_IIA
Accession [info] PS60030
Entry type [info] PATTERN
Date [info] 01-MAR-2006 CREATED; 01-MAR-2006 DATA UPDATE; 22-NOV-2017 INFO UPDATE.
PROSITE Doc. [info] PDOC60030

Name and characterization of the entry

Description [info] Bacteriocin class IIa family signature.
Pattern [info]
Y-G-N-G-[VL]-x-C-x(4)-C.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2017_11 which contains 556'196 sequence entries.


Total number of hits 23 in 23 different sequences
Number of true positive hits 23 in 23 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 5
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 82.14 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
23 sequences

BACT_LACSP  (P86291    ), BAVM_LACSK  (P80493    ), BCN80_BACCI (P86394    ), 
CBB1_CARML  (P38579    ), CBB2_CARML  (P38580    ), DIV35_CARDV (P84962    ), 
ETCHF_ENTFC (P86183    ), ETCM_ENTFC  (P85876    ), ETCP_ENTFC  (O30434    ), 
HJM79_ENTHR (Q0Z8B6    ), LCCA_LEUGE  (P34034    ), LCCB_LEUCA  (Q53446    ), 
LCCC_LEUME  (P81053    ), LCNM_LACLL  (P83002    ), MTCY_LEUME  (P38577    ), 
MUTI_ENTMU  (P80925    ), PIS1_CARML  (P80569    ), PPA1_PEDAC  (P29430    ), 
SAKA_LACCU  (P0A311    ), SAKA_LACSK  (P0A310    ), SAKP_LACSK  (P35618    ), 
UBAA_STRUB  (A9Q0M7    ), WSNA_WEIPA  (B3A0N4    )
» more

UniProtKB/Swiss-Prot
False negative sequences
5 sequences

BACT_STRMG  (P86386    ), BCN02_PAEPO (P86393    ), BCN37_PAEPO (P86395    ), 
CURVA_LACCU (P84886    ), ETC50_ENTFC (P85148    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences
1 sequence

BAVA_LACSK  (P80953    )

		
PDB
[Detailed view]
10 PDB

1CW5; 1CW6; 1OG7; 1OHM; 1OHN; 1RY3; 2A2B; 2LEU; 2N4K; 3LEU

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