 |
|
| Entry: PS00368 |
General information about the entry
| Entry name [info] | RIBORED_SMALL |
| Accession [info] | PS00368 |
| Entry type [info] | PATTERN |
| Date [info] |
01-NOV-1990 CREATED;
01-DEC-2001 DATA UPDATE; 07-APR-2021 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00317 |
| Associated ProRule [info] | PRU10014 |
Name and characterization of the entry
| Description [info] | Ribonucleotide reductase small subunit signature. |
| Pattern [info] |
[IVMSEQ]-E-x(1,2)-[LIVTA]-[HY]-[GSA]-x-[STAVM]-Y-x(2)-[LIVMQ]-x(3)- [LIVFY]-[IVFYCSA]. |
Numerical results [info]
| Total number of hits | 84 in 84 different sequences |
| Number of true positive hits | 84 in 84 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 10 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 89.36 % |
Comments [info]
| Taxonomic range [info] | Bacteriophages, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses |
| Maximum number of repetitions [info] | 1 |
| Site [info] | iron at position 2 |
| Site [info] | iron at position 5 |
| Site [info] | active_site at position 9 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
84 sequences
BNRDF_BPSPB (O64174 ), RI2BC_ARATH (P0DKH2 ), RI2BL_ARATH (P0DKH3 ), RIR2A_ARATH (P50651 ), RIR2A_MYCTO (P9WH72 ), RIR2A_MYCTU (P9WH73 ), RIR2B_HUMAN (Q7LG56 ), RIR2B_MACFA (Q4R741 ), RIR2B_MOUSE (Q6PEE3 ), RIR2B_MYCTO (P9WH70 ), RIR2B_MYCTU (P9WH71 ), RIR2B_PONAB (Q5R9G0 ), RIR2C_ARATH (Q9LSD0 ), RIR2_ALHV1 (O36410 ), RIR2_AQUAE (O67475 ), RIR2_ASFB7 (P42492 ), RIR2_ASFK5 (P0C8I0 ), RIR2_ASFM2 (P26713 ), RIR2_ASFP4 (P0C8I1 ), RIR2_ASFWA (P0C8I2 ), RIR2_BACSU (P50621 ), RIR2_BHV1C (Q01319 ), RIR2_BPT4 (P11156 ), RIR2_BUCAI (P57275 ), RIR2_BUCAP (Q8K9W4 ), RIR2_BUCBP (Q89AS5 ), RIR2_CAEEL (P42170 ), RIR2_DANRE (P79733 ), RIR2_DICDI (P42521 ), RIR2_DROME (P48592 ), RIR2_EBVA8 (P0CAP7 ), RIR2_EBVB9 (P0CAP6 ), RIR2_EBVG (P0C701 ), RIR2_ECO57 (P69925 ), RIR2_ECOLI (P69924 ), RIR2_EHV1B (P28847 ), RIR2_EHV2 (Q66662 ), RIR2_EHV4 (P50644 ), RIR2_ENCCU (Q8SRR2 ), RIR2_GAHVM (Q77MS0 ), RIR2_HAEIN (P43755 ), RIR2_HELPJ (Q9ZKC3 ), RIR2_HELPY (P55983 ), RIR2_HHV11 (P10224 ), RIR2_HHV1K (P06474 ), RIR2_HHV23 (P69520 ), RIR2_HHV2H (P69521 ), RIR2_HHV8P (F5HAW0 ), RIR2_HUMAN (P31350 ), RIR2_LEIAM (O46310 ), RIR2_MACFA (Q4R7Q7 ), RIR2_MESAU (Q60561 ), RIR2_MIMIV (Q7T6Y9 ), RIR2_MOUSE (P11157 ), RIR2_MYCLE (Q9CBQ2 ), RIR2_NEUCR (Q9C167 ), RIR2_PLAF4 (P50650 ), RIR2_PLAFG (P50649 ), RIR2_PSHV1 (Q6UDJ1 ), RIR2_RAT (Q4KLN6 ), RIR2_RSIV (Q9QTF2 ), RIR2_SALTY (P37427 ), RIR2_SCHPO (P36603 ), RIR2_SHV21 (Q01038 ), RIR2_SPISO (P07201 ), RIR2_SUHVK (P50645 ), RIR2_SWPVK (P32209 ), RIR2_TOBAC (P49730 ), RIR2_TREPA (O83092 ), RIR2_TRYBB (O15910 ), RIR2_VACCA (O57175 ), RIR2_VACCC (P20493 ), RIR2_VACCP (P29883 ), RIR2_VACCW (P11158 ), RIR2_VAR67 (P0DSS7 ), RIR2_VARV (P0DSS8 ), RIR2_VZVD (P09247 ), RIR2_VZVO (Q4JQV7 ), RIR2_YEAST (P09938 ), RIR2_YLDV (Q9DHU2 ), RIR4_ECOLI (P37146 ), RIR4_SALTY (P17424 ), RIR4_YEAST (P49723 ), YOSP_BACSU (O30601 )» more
|
| UniProtKB/Swiss-Prot False negative sequences |
10 sequences
RIR2_BACHD (Q9KFH7 ), RIR2_CHLMU (Q9PL92 ), RIR2_CHLPN (Q9Z6S4 ), RIR2_CHLTR (O84835 ), RIR2_IIV3 (Q197B2 ), RIR2_IIV6 (Q91FE8 ), RIR2_MYCGA (Q9XC20 ), RIR2_MYCGE (P47471 ), RIR2_MYCPN (P75461 ), RIR2_OSHVF (Q6R7K3 )» more |
| PDB [Detailed view] |
53 PDB
1AV8; 1H0N; 1H0O; 1JK0; 1JPR; 1JQC; 1MRR; 1MXR; 1PFR; 1PIM; 1PIU; 1PIY; 1PIZ; 1PJ0; 1PJ1; 1PM2; 1R2F; 1R65; 1RIB; 1RNR; 1SMQ; 1SMS; 1UZR; 1W68; 1W69; 1XIK; 1XSM; 2ALX; 2BQ1; 2R2F; 2UW2; 2VUX; 2XOF; 3HF1; 3N37; 3N38; 3N39; 3N3A; 3N3B; 3OLJ; 3UUS; 3VPM; 3VPN; 3VPO; 4DJN; 4DR0; 4ERM; 4ERP; 4M1F; 5CNS; 5CNT; 5CNU; 5CNV » more |
View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission