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PROSITE entry PS00368


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General information about the entry

Entry name [info] RIBORED_SMALL
Accession [info] PS00368
Entry type [info] PATTERN
Date [info] 01-NOV-1990 CREATED;
01-DEC-2001 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00317
Associated ProRule [info] PRU10014

Name and characterization of the entry

Description [info] Ribonucleotide reductase small subunit signature.
Pattern [info] 
[IVMSEQ]-E-x(1,2)-[LIVTA]-[HY]-[GSA]-x-[STAVM]-Y-x(2)-[LIVMQ]-x(3)-
[LIVFY]-[IVFYCSA].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_05 which contains 572'214 sequence entries.


Total number of hits 86 in 86 different sequences
Number of true positive hits 85 in 85 different sequences
Number of 'unknown' hits 0
Number of false positive hits 1
Number of false negative sequences 10
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 98.84 %
Recall (true positives / (true positives + false negatives)) 89.47 %

Comments [info]

Taxonomic range [info] Bacteriophages, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 1
Site [info] iron at position 2
Site [info] iron at position 5
Site [info] active_site at position 9
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 85 sequences 

BNRDF_BPSPB (O64174), RI2BC_ARATH (P0DKH2), RI2BL_ARATH (P0DKH3), 

RIR2A_ARATH (P50651), RIR2A_MYCTO (P9WH72), RIR2A_MYCTU (P9WH73), 
RIR2B_HUMAN (Q7LG56), RIR2B_MACFA (Q4R741), RIR2B_MOUSE (Q6PEE3), 
RIR2B_MYCTO (P9WH70), RIR2B_MYCTU (P9WH71), RIR2B_PONAB (Q5R9G0), 
RIR2C_ARATH (Q9LSD0), RIR2_ALHV1  (O36410), RIR2_AQUAE  (O67475), 
RIR2_ASFB7  (P42492), RIR2_ASFK5  (P0C8I0), RIR2_ASFM2  (P26713), 
RIR2_ASFP4  (P0C8I1), RIR2_ASFWA  (P0C8I2), RIR2_BACSU  (P50621), 
RIR2_BHV1C  (Q01319), RIR2_BPT4   (P11156), RIR2_BUCAI  (P57275), 
RIR2_BUCAP  (Q8K9W4), RIR2_BUCBP  (Q89AS5), RIR2_CAEEL  (P42170), 
RIR2_DANRE  (P79733), RIR2_DICDI  (P42521), RIR2_DROME  (P48592), 
RIR2_EBVA8  (P0CAP7), RIR2_EBVB9  (P0CAP6), RIR2_EBVG   (P0C701), 
RIR2_ECO57  (P69925), RIR2_ECOLI  (P69924), RIR2_EHV1B  (P28847), 
RIR2_EHV2   (Q66662), RIR2_EHV4   (P50644), RIR2_ENCCU  (Q8SRR2), 
RIR2_GAHVM  (Q77MS0), RIR2_HAEIN  (P43755), RIR2_HELPJ  (Q9ZKC3), 
RIR2_HELPY  (P55983), RIR2_HHV11  (P10224), RIR2_HHV1K  (P06474), 
RIR2_HHV23  (P69520), RIR2_HHV2H  (P69521), RIR2_HHV8P  (F5HAW0), 
RIR2_HUMAN  (P31350), RIR2_LEIAM  (O46310), RIR2_MACFA  (Q4R7Q7), 
RIR2_MESAU  (Q60561), RIR2_MIMIV  (Q7T6Y9), RIR2_MONPV  (A0A7H0DN21), 
RIR2_MOUSE  (P11157), RIR2_MYCLE  (Q9CBQ2), RIR2_NEUCR  (Q9C167), 
RIR2_PLAF4  (P50650), RIR2_PLAFG  (P50649), RIR2_PSHV1  (Q6UDJ1), 
RIR2_RAT(Q4KLN6), RIR2_RSIV   (Q9QTF2), RIR2_SALTY  (P37427), 
RIR2_SCHPO  (P36603), RIR2_SHV21  (Q01038), RIR2_SPISO  (P07201), 
RIR2_SUHVK  (P50645), RIR2_SWPVK  (P32209), RIR2_TOBAC  (P49730), 
RIR2_TREPA  (O83092), RIR2_TRYBB  (O15910), RIR2_VACCA  (O57175), 
RIR2_VACCC  (P20493), RIR2_VACCP  (P29883), RIR2_VACCW  (P11158), 
RIR2_VAR67  (P0DSS7), RIR2_VARV   (P0DSS8), RIR2_VZVD   (P09247), 
RIR2_VZVO   (Q4JQV7), RIR2_YEAST  (P09938), RIR2_YLDV   (Q9DHU2), 
RIR4_ECOLI  (P37146), RIR4_SALTY  (P17424), RIR4_YEAST  (P49723), 
YOSP_BACSU  (O30601)
» more

UniProtKB/Swiss-Prot
False negative sequences		 10 sequences 

RIR2_CHLMU  (Q9PL92), RIR2_CHLPN  (Q9Z6S4), RIR2_CHLTR  (O84835), 

RIR2_HALH5  (Q9KFH7), RIR2_IIV3   (Q197B2), RIR2_IIV6   (Q91FE8), 
RIR2_MYCGA  (Q9XC20), RIR2_MYCGE  (P47471), RIR2_MYCPN  (P75461), 
RIR2_OSHVF  (Q6R7K3)
» more

UniProtKB/Swiss-Prot
False positive sequences		 1 sequence 

GCYB_PLABA  (A0A509APX1)


				
	

	

		PDB
[Detailed view]		
		
			58 PDB
			


			1AV8; 1H0N; 1H0O; 1JK0; 1JPR; 1JQC; 1MRR; 1MXR; 1PFR; 1PIM; 1PIU; 1PIY; 
			
				1PIZ; 1PJ0; 1PJ1; 1PM2; 1R2F; 1R65; 1RIB; 1RNR; 1SMQ; 1SMS; 1UZR; 1W68; 
				1W69; 1XIK; 1XSM; 2ALX; 2BQ1; 2R2F; 2UW2; 2VUX; 2XOF; 3HF1; 3N37; 3N38; 
				3N39; 3N3A; 3N3B; 3OLJ; 3UUS; 3VPM; 3VPN; 3VPO; 4DJN; 4DR0; 4ERM; 4ERP; 
				4M1F; 5CNS; 5CNT; 5CNU; 5CNV; 7AI8; 7AI9; 7AIK; 7AIL; 7BET
			
			

			» more