PROSITE entry PS00368
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General information about the entry
| Entry name [info] | RIBORED_SMALL |
| Accession [info] | PS00368 |
| Entry type [info] | PATTERN |
| Date [info] |
01-NOV-1990 CREATED;
01-DEC-2001 DATA UPDATE; 27-MAR-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00317 |
| Associated ProRule [info] | PRU10014 |
Name and characterization of the entry
| Description [info] | Ribonucleotide reductase small subunit signature. |
| Pattern [info] |
[IVMSEQ]-E-x(1,2)-[LIVTA]-[HY]-[GSA]-x-[STAVM]-Y-x(2)-[LIVMQ]-x(3)- [LIVFY]-[IVFYCSA]. |
Numerical results [info]
| Total number of hits | 86 in 86 different sequences |
| Number of true positive hits | 85 in 85 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 1 |
| Number of false negative sequences | 10 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 98.84 % |
| Recall (true positives / (true positives + false negatives)) | 89.47 % |
Comments [info]
| Taxonomic range [info] | Bacteriophages, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses |
| Maximum number of repetitions [info] | 1 |
| Site [info] | iron at position 2 |
| Site [info] | iron at position 5 |
| Site [info] | active_site at position 9 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
85 sequences
BNRDF_BPSPB (O64174), RI2BC_ARATH (P0DKH2), RI2BL_ARATH (P0DKH3), RIR2A_ARATH (P50651), RIR2A_MYCTO (P9WH72), RIR2A_MYCTU (P9WH73), RIR2B_HUMAN (Q7LG56), RIR2B_MACFA (Q4R741), RIR2B_MOUSE (Q6PEE3), RIR2B_MYCTO (P9WH70), RIR2B_MYCTU (P9WH71), RIR2B_PONAB (Q5R9G0), RIR2C_ARATH (Q9LSD0), RIR2_ALHV1 (O36410), RIR2_AQUAE (O67475), RIR2_ASFB7 (P42492), RIR2_ASFK5 (P0C8I0), RIR2_ASFM2 (P26713), RIR2_ASFP4 (P0C8I1), RIR2_ASFWA (P0C8I2), RIR2_BACSU (P50621), RIR2_BHV1C (Q01319), RIR2_BPT4 (P11156), RIR2_BUCAI (P57275), RIR2_BUCAP (Q8K9W4), RIR2_BUCBP (Q89AS5), RIR2_CAEEL (P42170), RIR2_DANRE (P79733), RIR2_DICDI (P42521), RIR2_DROME (P48592), RIR2_EBVA8 (P0CAP7), RIR2_EBVB9 (P0CAP6), RIR2_EBVG (P0C701), RIR2_ECO57 (P69925), RIR2_ECOLI (P69924), RIR2_EHV1B (P28847), RIR2_EHV2 (Q66662), RIR2_EHV4 (P50644), RIR2_ENCCU (Q8SRR2), RIR2_GAHVM (Q77MS0), RIR2_HAEIN (P43755), RIR2_HELPJ (Q9ZKC3), RIR2_HELPY (P55983), RIR2_HHV11 (P10224), RIR2_HHV1K (P06474), RIR2_HHV23 (P69520), RIR2_HHV2H (P69521), RIR2_HHV8P (F5HAW0), RIR2_HUMAN (P31350), RIR2_LEIAM (O46310), RIR2_MACFA (Q4R7Q7), RIR2_MESAU (Q60561), RIR2_MIMIV (Q7T6Y9), RIR2_MONPV (A0A7H0DN21), RIR2_MOUSE (P11157), RIR2_MYCLE (Q9CBQ2), RIR2_NEUCR (Q9C167), RIR2_PLAF4 (P50650), RIR2_PLAFG (P50649), RIR2_PSHV1 (Q6UDJ1), RIR2_RAT(Q4KLN6), RIR2_RSIV (Q9QTF2), RIR2_SALTY (P37427), RIR2_SCHPO (P36603), RIR2_SHV21 (Q01038), RIR2_SPISO (P07201), RIR2_SUHVK (P50645), RIR2_SWPVK (P32209), RIR2_TOBAC (P49730), RIR2_TREPA (O83092), RIR2_TRYBB (O15910), RIR2_VACCA (O57175), RIR2_VACCC (P20493), RIR2_VACCP (P29883), RIR2_VACCW (P11158), RIR2_VAR67 (P0DSS7), RIR2_VARV (P0DSS8), RIR2_VZVD (P09247), RIR2_VZVO (Q4JQV7), RIR2_YEAST (P09938), RIR2_YLDV (Q9DHU2), RIR4_ECOLI (P37146), RIR4_SALTY (P17424), RIR4_YEAST (P49723), YOSP_BACSU (O30601)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
10 sequences
RIR2_CHLMU (Q9PL92), RIR2_CHLPN (Q9Z6S4), RIR2_CHLTR (O84835), RIR2_HALH5 (Q9KFH7), RIR2_IIV3 (Q197B2), RIR2_IIV6 (Q91FE8), RIR2_MYCGA (Q9XC20), RIR2_MYCGE (P47471), RIR2_MYCPN (P75461), RIR2_OSHVF (Q6R7K3)» more |
| UniProtKB/Swiss-Prot False positive sequences |
1 sequence
GCYB_PLABA (A0A509APX1) |
| PDB [Detailed view] |
58 PDB
1AV8; 1H0N; 1H0O; 1JK0; 1JPR; 1JQC; 1MRR; 1MXR; 1PFR; 1PIM; 1PIU; 1PIY; 1PIZ; 1PJ0; 1PJ1; 1PM2; 1R2F; 1R65; 1RIB; 1RNR; 1SMQ; 1SMS; 1UZR; 1W68; 1W69; 1XIK; 1XSM; 2ALX; 2BQ1; 2R2F; 2UW2; 2VUX; 2XOF; 3HF1; 3N37; 3N38; 3N39; 3N3A; 3N3B; 3OLJ; 3UUS; 3VPM; 3VPN; 3VPO; 4DJN; 4DR0; 4ERM; 4ERP; 4M1F; 5CNS; 5CNT; 5CNU; 5CNV; 7AI8; 7AI9; 7AIK; 7AIL; 7BET » more |