PROSITE entry PS50847
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General information about the entry
| Entry name [info] | GRAM_POS_ANCHORING |
| Accession [info] | PS50847 |
| Entry type [info] | MATRIX |
| Date [info] |
01-MAY-2002 CREATED;
26-FEB-2020 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00373 |
| Associated ProRule [info] | PRU00477 |
Name and characterization of the entry
| Description [info] | Gram-positive cocci surface proteins LPxTG motif profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=39; /DISJOINT: DEFINITION=PROTECT; N1=4; N2=36; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.9159126; R2=0.0060830; TEXT='-LogE'; /NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=3385.1904297; R2=0.9610918; PRIORITY=1; TEXT='Heuristic 5.0%'; /CUT_OFF: LEVEL=0; SCORE=918; H_SCORE=4267; N_SCORE=8.5; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=590; H_SCORE=3952; N_SCORE=6.5; MODE=1; TEXT='?'; /DEFAULT: M0=-49; D=-100; I=-100; B1=-1000; E1=-1000; MI=-255; MD=-255; IM=-255; DM=-255; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; BI=-255; BD=-255; /M: SY='L'; M= -97, -99,-115,-107, -70,-116, -98, -62,-108, 97, -58,-114,-114,-101,-105,-107, -93, -69,-101, -83; /M: SY='P'; M= 5,-117, -97, -86,-115, -95, -99,-103, -93,-112, -99,-101, 127, -95,-104, -24, -87,-105,-109,-112; /M: SY='D'; M= -12,-105, 48, 42,-104, -96, -3,-101, 39, -31, -94, 25, -95, 41, -7, 5, 3, -33,-110, -16; /M: SY='T'; M= -21, -91, -88, -90, -98, -97, -98, -89, -87, -93, -90, -77, -89, -92, -96, -66, 120, -81,-118, -96; /M: SY='G'; M= -27,-105, -93,-104,-112, 104, -99,-119, -98,-115,-104, -9, -98, -96,-105, -32, -96,-112,-104,-107; /I: I=-26; MI=0; MD=-65; IM=0; DM=-65; /M: SY='E'; M= 2,-102, 60, 61, -6, -93, -87,-101, -40, -75, -98, 36, -94, -79, -41, 32, 22, -28,-113, -96; /M: SY='N'; M= -19,-101, 5, 42,-106, 3, 14, -32, 30,-103, -96, 53, -94, -38, -25, 33, 32, -52,-113, -97; /M: SY='D'; M= 5,-103, 49, 4,-101, 14, -89, 11, -13, -46, -5, 30, -30, 13, -19, 29, 4, -64,-110, -17; /M: SY='N'; M= -29, -99, -17, 9, -61, -38, -20, -25, -19, -50, 8, 62, 7, -39, -90, 43, 51, -31,-108, 14; /M: SY='N'; M= -1,-102, 1, -19, 16, -78, -10, 0, -21, 7, -17, 54, 11, 5, -13, 21, -55, 11, -8, -38; /M: SY='F'; M= 3,-102, -27, -61, 34, -1, -93, 13, -18, 28, -81, 26, 8, -6, -19, -10, -7, -25, 10, 15; /M: SY='M'; M= 18,-100,-101, -98, 28, 16, -95, -8, -43, 40, 53, -32, 8, -41, -99, 3, 20, -80,-100, -28; /M: SY='T'; M= 35, -97, -96, -34, 2, -27, 9, -36, -39, 25, 2, -56, 6, -32, -96, -17, 64, -16, 9, -89; /M: SY='L'; M= 33, -99,-107,-102, -16, -20,-102, 32,-101, 55, -24,-101,-105, -98,-103, -61, 19, 13, 38, -24; /M: SY='G'; M= 37,-100,-104,-101, 29, 38,-101, 4,-101, 30, -3, -97, 19, -98,-104, -27, -88, 24,-101, -88; /I: I=-20; MD=-50; /M: SY='G'; M= 24,-105,-104,-105, 30, 68,-104, -48, -25, 9, -91, -93,-105,-101,-105, -36, -22, -21, 14, -93; D=-20; /I: I=-20; MD=-50; /M: SY='L'; M= 38,-105, -73,-106, -94, 37,-104, -28,-106, 42, -1,-101,-109,-101,-108, 2, -93, -4,-109, -28; D=-20; /I: I=-20; MD=-50; /M: SY='T'; M= 21,-118,-125,-122, -43, -34,-124, -7,-120, -1, -6,-117,-123,-119,-124, -40, 22, 20,-130,-113; D=-20; /I: I=-20; MI=0; MD=-50; IM=0; DM=-50; /M: SY='M'; M= -9, -99,-109,-104, 31, -16, -98, 18,-103, 60, 63,-102,-107, -98,-103, -3, -24, 9,-100, -81; /M: SY='L'; M= 27, -98,-107,-102, 13, -16, -99, 6,-101, 57, 36,-100,-105, -97,-102, 7, -21, 23,-102, -85; /M: SY='G'; M= 39, 10, -99, -99, -25, 44,-100, -5, -97, 22, -12, -90,-100, -95,-102, 16, 31, 4,-106, -94; /M: SY='L'; M= 36, -98,-107,-102, -33, -9,-102, 39,-102, 54, 5,-100,-105, -97,-103, 0, -46, 19,-104, -89; /M: SY='G'; M= 26,-100,-100,-100, -7, 59,-100, -13, -43, 19, 4, -90,-101, -95,-101, 22, -17, 12,-105, -94; /M: SY='G'; M= 12, 12, -95, -49, -30, 78, -98, -29, -97, -7, -94, -85, -99, -94,-103, 31, 5, -95,-104, -24; /M: SY='L'; M= 42, -98,-104, -99, -83, -63, 9, 12,-100, 59, -17, -98,-104, -95,-101, 7, 12, 0,-106, -44; /M: SY='F'; M= 9, -17,-108,-104, 48, 7, -98, -1, -44, 34, 22,-101,-108,-100, -39, -47, -48, 40, -95, 23; /M: SY='L'; M= 11,-102,-109,-105, 14, -1,-100, 36,-101, 61, -71,-104,-109, -52, -15, -47, -58, -15, -98, 8; /M: SY='Y'; M= -3,-104,-108,-102, 35, -30, -95, 21, -15, 41, -12,-102, -37, -97, 4, -48, -56, 10, -6, 55; /M: SY='K'; M= 7,-104, -97, -90, -4, 15, 11, -39, 48, -20, -5, -89,-102, -85, 43, -22, -4, 18,-102, 15; /M: SY='R'; M= -24,-108, -91, -49, -15, -60, -88,-105, 68, -49, -94, -28,-101, -15, 84, -11, -29, -55,-105, -93; /M: SY='K'; M= -39,-109, -33, -80, -29, -37, -86,-109, 76,-107, -97, 30, -3, -75, 75, -33, -90,-105,-105, -36; /M: SY='R'; M= -55,-110, -87, 6,-108,-103, -3,-111, 70,-106, -96, -27, -99, 7, 87, -88, -8,-105,-107, -95; /M: SY='K'; M= -14,-112, -5, 32, -40,-104, -92, -47, 79,-109,-100, -25, -24, -77, 46, -91, -43,-105,-110,-100; /M: SY='N'; M= -56,-112, -12, 29,-115, -7, -4, -44, -7, -60,-103, 67,-106, 34, 9, 17, -92, -63,-121,-105; /M: SY='N'; M= -24,-118, 29, -24,-121, -16, 14,-116, 15, -73,-112, 31,-113, -11, -58, 25, -25, -24,-130,-112; /M: SY='K'; M=-120,-137, 5, -21,-139, -26, -16,-135, 38,-137,-129, 0,-128,-108, -17, -7,-116, -38,-143,-128; /M: SY='K'; M= -6,-144, -11,-123,-146,-135,-131, -32, 19,-140,-134, 15,-141,-122, -13,-125,-127, -52,-153,-139; /M: SY='K'; M=-147,-160, -46, 8, -18,-155,-140,-158, 9,-155,-150, -30,-149,-129, -24,-140, -39,-155,-157,-143; /M: SY='H'; M=-162,-174, -60, -70,-164,-170, 4,-160, -27, -30,-149, -64,-168, -1,-147,-155, -56,-162,-178,-156; /I: E1=0; IE=-255; DE=-255;» more |
Numerical results [info]
| Total number of hits | 204 in 204 different sequences |
| Number of true positive hits | 204 in 204 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 2 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Taxonomic range [info] | Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Matrix type [info] | protein_domain |
| Scaling database [info] | reversed |
| Author [info] | CJA_Sigrist |
| Feature key [info] | MOTIF |
| Feature description [info] | LPXTG sorting signal |
| Version [info] | 8 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
204 sequences
ARP4_STRPY (P13050), ASA1_ENTFA (P17953), BAG_STRAG (P27951), BBP_STAAR (Q6GJA6), BBP_STAAU (Q14U76), BCA_STRA1 (Q02192), C5AP_STRP1 (P58099), C5AP_STRP3 (P0DD34), C5AP_STRP6 (Q5X9R0), C5AP_STRP8 (Q8NZ80), C5AP_STRPQ (P0DD35), C5AP_STRPY (P15926), CHPA_STRCO (Q8CJY7), CHPB_STRCO (Q9X7U2), CHPC_STRCO (Q9AD93), CLFA_STAA8 (Q2G015), CLFA_STAAC (Q5HHM8), CLFA_STAAE (Q53653), CLFA_STAAM (Q932C5), CLFA_STAAN (Q99VJ4), CLFA_STAAR (Q6GIK4), CLFA_STAAS (Q6GB45), CLFA_STAAW (Q8NXJ1), CLFB_STAA8 (Q2FUY2), CLFB_STAAC (Q5HCR7), CLFB_STAAE (O86476), CLFB_STAAM (Q99R07), CLFB_STAAN (Q7A382), CLFB_STAAR (Q6GDH2), CLFB_STAAS (Q6G644), CLFB_STAAW (Q8NUL0), CNA_STAAU (Q53654), DEXT_STRDO (P39653), DEXT_STRMU (Q54443), FAP1_STRPA (A1C3L3), FBE_STAEP (O70022), FM1_ACTVI (P18477), FM2_ACTNA (P12616), FNBA_STAA1 (A7X6I5), FNBA_STAA3 (Q2FE03), FNBA_STAA8 (P14738), FNBA_STAAB (Q2YW62), FNBA_STAAC (Q5HD51), FNBA_STAAM (Q99RD2), FNBA_STAAN (Q7A3J7), FNBA_STAAR (Q6GDU5), FNBA_STAAS (Q6G6H3), FNBA_STAAW (Q8NUU7), FNBB_STAA3 (A0A0H2XKG3), FRUA_STRMU (Q03174), GH101_RENSM (A9WNA0), GH101_STRPN (Q2MGH6), GH101_STRR6 (Q8DR60), GSPB_STRGN (Q939N5), HSA_STRGC (A8AWU7), HYSA_STRPN (Q54873), IGA1A_STRPN (Q97QP7), IGA1B_STREE (Q54875), IGA1_STRR6 (Q59947), IGA1_STRSA (Q59986), INLA_LISM4 (G2K3G6), INLA_LISMF (Q723K6), INLA_LISMO (P0DJM0), INLI_LISMF (Q723X5), INLI_LISMO (Q8YA32), INLJ_LISMF (Q71VU0), INLJ_LISMO (Q8Y3L4), INUS_LACJO (Q74K42), ISDA_STAA1 (A7X148), ISDA_STAA2 (A6U0U7), ISDA_STAA3 (Q2FHV1), ISDA_STAA8 (Q2FZE9), ISDA_STAA9 (A5IS16), ISDA_STAAB (Q2YX95), ISDA_STAAC (Q5HGV4), ISDA_STAAE (A6QG31), ISDA_STAAM (Q99UX4), ISDA_STAAN (Q7A655), ISDA_STAAR (Q6GHV6), ISDA_STAAS (Q6GA85), ISDA_STAAT (A8Z1R0), ISDA_STAAU (P0C1S5), ISDA_STAAW (Q7A152), ISDB_STAA1 (A7X146), ISDB_STAA2 (A6U0U6), ISDB_STAA3 (Q2FHV2), ISDB_STAA8 (Q2FZF0), ISDB_STAA9 (A5IS15), ISDB_STAAB (Q2YX96), ISDB_STAAC (Q5HGV5), ISDB_STAAE (A6QG30), ISDB_STAAM (Q99UX5), ISDB_STAAN (Q7A656), ISDB_STAAR (Q6GHV7), ISDB_STAAS (Q6GA86), ISDB_STAAT (P0C7J5), ISDB_STAAW (Q8NX66), ISDH_STAA3 (Q2FG07), ISDH_STAA8 (Q2FXJ2), ISDH_STAAB (Q2YTF7), ISDH_STAAC (Q5HF43), ISDH_STAAM (Q931P4), ISDH_STAAN (Q99TD3), ISDH_STAAS (Q6G8J7), ISDH_STAAW (Q8NW39), LSC_FRUSA (Q70XJ9), LSC_LACGS (D3WYW0), M12_STRPY (P19401), M21_STRPY (P50468), M22_STRPY (P50469), M24_STRPY (P12379), M49_STRP9 (P16947), M5_STRP5(P02977), M6A_STRP6 (Q5X9Q9), M6B_STRPY (P08089), MANA_BIFAA (A1A278), MRP4_STRPY (P30141), MRP_STRSU (P32653), MX_STRP9(P16946), NANA_STREE (P62575), NANA_STRR6 (P62576), NISP_LACLL (Q07596), NTPES_BACSU (O34313), P1P_LACLC (P16271), P2P_LACLC (P15293), P2P_LACPA (Q02470), P3P_LACLS (P15292), PAA_STRCG (Q9LBG3), PAB_FINMA (Q51911), PAC_STRMG (P11657), PADA_STRGC (A8AZP4), PAS_STRIT (Q9KW51), PFBA_STRR6 (Q8CYC9), PLS_STAAC (Q5HJU7), PLS_STAAM (Q931E9), PLS_STAAN (P61598), PLS_STAAU (P80544), PLS_STAAW (Q8NUV0), PLS_STAES (Q8CQD9), PSRP_STRPN (A0A0H2URK1), PULA_STREE (Q9F930), PULA_STRP2 (A0A0H2ZL64), PULA_STRPN (A0A0H2UNG0), SASG_STAA8 (Q2G2B2), SDRC_STAA3 (Q2FJ79), SDRC_STAA8 (Q2G0L5), SDRC_STAAC (Q5HIB4), SDRC_STAAE (O86487), SDRC_STAAM (Q99W48), SDRC_STAAN (Q7A781), SDRC_STAAR (Q6GJA7), SDRC_STAAS (Q6GBS6), SDRC_STAAW (Q8NXX7), SDRD_STAA3 (Q2FJ78), SDRD_STAA8 (Q2G0L4), SDRD_STAAC (Q5HIB3), SDRD_STAAE (O86488), SDRD_STAAM (Q99W47), SDRD_STAAN (Q7A780), SDRD_STAAS (Q6GBS5), SDRD_STAAW (Q8NXX6), SDRE_STAA3 (Q2FJ77), SDRE_STAAC (Q5HIB2), SDRE_STAAE (O86489), SDRE_STAAM (Q932F7), SDRE_STAAN (Q99W46), SDRE_STAAS (Q6GBS4), SDRE_STAAW (Q8NXX5), SDRF_STAEP (Q9KI14), SDRF_STAES (Q8CMP4), SDRG_STAEP (Q9KI13), SDRI_STASA (Q8KWM1), SPAA_STRDO (P21979), SPAP_STRMU (P23504), SPA_STAA8 (P02976), SPA_STAAE (A0A0H3K686), SPA_STAAM (P0A015), SPA_STAAN (P99134), SPA_STAAU (P38507), SPG1_STRSG (P06654), SPG2_STRSG (P19909), SPH_STRP1 (P50470), SRAP_STAA3 (Q2FDK5), SRAP_STAA8 (Q2FUW1), SRAP_STAAC (Q5HCP3), SRAP_STAAM (Q99QY4), SRAP_STAAN (Q7A362), SRAP_STAAR (Q6GDE9), SRAP_STAAS (Q6G620), SRAP_STAAU (Q8VQ99), SRAP_STAAW (Q8NUJ3), SRAP_STAHJ (Q4L9P0), SSPA_STRGC (A8AUS0), SSPB_STRGC (A8AUS1), SSPB_STRGN (P16952), STRH_STRPN (P49610), TEE6_STRP6 (P18481), UAFA_STAS1 (Q4A0V8), WAPA_STRMU (P11000), Y2714_LISMO (Q8Y3W5), YHCR_BACSU (P54602), ZMPB_STRPN (Q9L7Q2), ZMPB_STRR6 (Q8DQN5), ZMPC_STRPN (Q97T80)» more
|
| UniProtKB/Swiss-Prot 'Partial' sequences |
2 sequences
M32_STRTR (P83330), PAM_STRPY (P49054) |