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PROSITE entry PS50847


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PURL: https://purl.expasy.org/prosite/signature/PS50847

Direct ScanProsite submission
General information about the entry

Entry name [info] GRAM_POS_ANCHORING
Accession [info] PS50847
Entry type [info] MATRIX
Date [info] 01-MAY-2002 CREATED;
26-FEB-2020 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00373
Associated ProRule [info] PRU00477

Name and characterization of the entry

Description [info] Gram-positive cocci surface proteins LPxTG motif profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=39;
/DISJOINT: DEFINITION=PROTECT; N1=4; N2=36;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.9159126; R2=0.0060830; TEXT='-LogE';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=3385.1904297; R2=0.9610918; PRIORITY=1; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=918; H_SCORE=4267; N_SCORE=8.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=590; H_SCORE=3952; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-49; D=-100; I=-100; B1=-1000; E1=-1000; MI=-255; MD=-255; IM=-255; DM=-255;
...
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.


Total number of hits 205 in 205 different sequences
Number of true positive hits 205 in 205 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 2
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Feature key [info] MOTIF
Feature description [info] LPXTG sorting signal
Version [info] 8

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
205 sequences

ARP4_STRPY  (P13050), ASA1_ENTFA  (P17953), BAG_STRAG   (P27951), 
» more

UniProtKB/Swiss-Prot
'Partial' sequences
2 sequences

M32_STRTR   (P83330), PAM_STRPY   (P49054)