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| Entry: PS51017 |
General information about the entry
| Entry name [info] | CCT |
| Accession [info] | PS51017 |
| Entry type [info] | MATRIX |
| Date [info] |
01-SEP-2004 CREATED;
10-MAY-2017 DATA UPDATE; 22-FEB-2023 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC51017 |
| Associated ProRule [info] | PRU00357 |
Name and characterization of the entry
| Description [info] | CCT domain profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=43; /DISJOINT: DEFINITION=PROTECT; N1=5; N2=39; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.1719618; R2=0.0099220; TEXT='NScore'; /NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=2482.7265625; R2=2.9572649; PRIORITY=1; TEXT='Heuristic 5.0%'; /CUT_OFF: LEVEL=0; SCORE=638; H_SCORE=4369; N_SCORE=8.5; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=437; H_SCORE=3775; N_SCORE=6.5; MODE=1; TEXT='?'; /DEFAULT: M0=-7; D=-50; I=-50; B1=-500; E1=-500; MI=-105; MD=-105; IM=-105; DM=-105; ... A B C D E F G H I K L M N P Q R S T V W Y Z /I: B1=0; BI=-105; BD=-105; /M: SY='R'; M=-19, -8,-30, -7, 3,-21,-19, 10,-30, 25,-20,-10, 1,-19, 10, 58, -9,-11,-22,-22, -7, 2; /M: SY='E'; M= 1, 0,-24, 1, 16,-22,-15, -8,-19, 8,-13,-10, -2,-11, 4, 4, -4, -8,-15,-25,-15, 9; /M: SY='A'; M= 18, 2,-18, -2, 10,-24, -8, -9,-18, 0,-17,-13, 1, -9, 4, -7, 7, -2,-13,-26,-18, 7; /M: SY='R'; M= 5, -8,-20,-11, -2,-16,-13,-11,-18, 10,-16, -9, -4,-14, 1, 13, 3, -2,-10,-22,-12, -1; /M: SY='I'; M= -6,-26,-18,-28,-22, 1,-29,-23, 23,-20, 22, 14,-24,-26,-20,-18,-17, -5, 23,-24, -5,-22; /M: SY='M'; M= -8, -9,-22,-12, -5,-13,-20, 0, -3, -5, 1, 12, -8,-17, 5, -3, -6, -2, -6,-24, -5, -1; /M: SY='R'; M=-16, -4,-29, -3, 3,-23,-18, -3,-30, 31,-23,-12, 2,-17, 9, 53, -7, -9,-20,-22,-11, 3; /M: SY='Y'; M=-19,-18,-28,-19,-18, 31,-29, 8, -1,-13, 0, -1,-17,-27,-12,-12,-18,-10, -8, 18, 57,-18; /M: SY='R'; M=-15, -9,-28,-10, 0,-16,-21, -7,-23, 27,-16, -7, -3,-17, 4, 42,-10, -7,-16,-19, -7, 0; /M: SY='E'; M= -9, 5,-28, 11, 33,-26,-19, -4,-23, 8,-17,-14, -1, -2, 12, 2, -3, -8,-21,-29,-17, 22; /M: SY='K'; M= -9, -3,-28, -4, 5,-22,-16,-11,-26, 36,-24, -9, -2,-12, 4, 21, -8, -9,-17,-20, -9, 5; /M: SY='R'; M=-15, -9,-28,-10, -1,-16,-21, -6,-23, 29,-18, -5, -4,-18, 5, 44,-11,-10,-14,-19, -7, 0; /M: SY='K'; M= -9, 0,-26, -2, 6,-24,-14, -7,-22, 23,-21, -9, 3,-14, 8, 18, -5, -7,-17,-24,-12, 6; /M: SY='T'; M= -3, 1,-20, -3, 1,-17,-10, -8,-14, -2,-11, -6, 4,-15, 1, -1, 2, 5,-13,-28,-13, 1; /M: SY='R'; M=-19,-10,-29,-10, -2,-17,-21, 5,-27, 24,-18, -9, -1,-20, 8, 58, -9, -7,-19,-18, -4, -2; /M: SY='R'; M=-11, -2, -5, -7, -5,-17,-18, -4,-18, 7,-12, -7, 4,-21, -3, 8, -7, -7,-15,-29,-12, -5; /M: SY='F'; M=-19,-22,-23,-31,-25, 57,-26,-13, -2,-24, 5, -2,-13,-29,-30,-17,-18,-10, -5, 13, 29,-25; /M: SY='D'; M= -7, 9,-25, 14, 12,-26, 1, -6,-26, -4,-20,-17, 5,-13, 0, -5, 2, -7,-21,-30,-19, 5; /M: SY='K'; M=-10, -5,-22, -6, 4,-25,-22,-12,-23, 37,-22, -7, -4,-14, 5, 23,-12,-10,-15,-21,-10, 4; /M: SY='K'; M= -8, -3,-25, -6, 3,-23,-20, -6,-21, 21,-18, -7, -2,-13, 11, 19, -2, 3,-15,-22, -9, 7; /M: SY='I'; M= -8,-27,-20,-33,-27, -5,-30,-25, 32,-26, 10, 11,-20,-17,-21,-26,-16, -9, 24,-24, -6,-27; /M: SY='R'; M=-14,-11,-27,-12, -2,-18,-20, -5,-23, 24,-15, -7, -4,-19, 5, 51,-10, -8,-14,-21,-10, -2; /M: SY='Y'; M=-20,-20,-30,-20,-20, 30,-30, 20, 0,-10, 0, 0,-20,-30,-10,-10,-20,-10,-10, 30, 80,-20; /M: SY='A'; M= 15, -3,-20, -5, 13,-25,-10, -8,-16, -2,-14,-10, -6, -9, 9, -9, 4, -3,-12,-24,-17, 11; /M: SY='C'; M= 2,-11, 17,-14,-14,-14,-15,-19, -9,-17,-15,-11, -6,-22,-14,-17, 14, 8, 4,-39,-19,-14; /M: SY='R'; M=-20,-10,-30,-10, 0,-20,-20, 0,-30, 30,-20,-10, 0,-20, 10, 70,-10,-10,-20,-20,-10, 0; /M: SY='K'; M= -9, -1,-29, -1, 9,-29,-19, -9,-29, 45,-28,-10, 0,-11, 11, 31, -9,-10,-20,-20,-10, 9; /M: SY='A'; M= 7, -7,-19,-10, 2,-17,-16,-14,-12, 2, -7, -6, -7,-12, -1, -2, 1, 5, -6,-24,-13, 0; /M: SY='L'; M=-11,-15,-21,-18,-16, 2,-24,-10, 6,-13, 14, 5,-10,-26,-13, -5,-15, -4, 3,-18, 5,-16; /M: SY='A'; M= 50,-10,-10,-20,-10,-20, 0,-20,-10,-10,-10,-10,-10,-10,-10,-20, 10, 0, 0,-20,-20,-10; /M: SY='D'; M=-12, 20,-21, 31, 26,-29,-17, -5,-27, -1,-17,-19, 4,-10, 4, -9, -3, -9,-22,-34,-18, 15; /M: SY='Q'; M= -4, -2,-18, -3, 1,-23,-14, -7,-19, 6,-19, -9, 1,-14, 9, 9, 7, 4,-13,-28,-13, 4; /M: SY='R'; M=-18,-10,-29,-11, -1,-19,-20, 0,-24, 26,-16, -2, -2,-19, 11, 58,-11,-10,-17,-20, -9, 1; /M: SY='P'; M= -8,-17,-35,-10, 0,-27,-20,-16,-18, -3,-23,-14,-16, 57, -3,-10, -9, -9,-24,-27,-24, -5; /M: SY='R'; M=-20,-10,-30,-10, 0,-20,-20, 1,-30, 29,-20,-10, 0,-20, 10, 68,-10,-10,-20,-19, -9, 0; /M: SY='V'; M= -2,-22,-16,-26,-23, -3,-26,-22, 23,-16, 8, 12,-18,-24,-19,-16,-10, -3, 29,-27, -8,-22; /M: SY='K'; M=-13, -2,-30, -3, 5,-27,-15, -6,-30, 38,-27,-11, 3,-14, 9, 38, -9,-10,-21,-21,-11, 6; /M: SY='G'; M= 1,-12,-28,-12,-20,-27, 61,-21,-34,-20,-26,-17, -3,-21,-20,-20, -1,-18,-24,-21,-28,-20; /M: SY='R'; M=-15, -7,-27, -7, 5,-25,-19, 1,-26, 21,-20, -8, 0,-17, 22, 47, -5, -7,-22,-21,-11, 10; /M: SY='F'; M=-19,-26,-20,-36,-28, 72,-28,-19, -1,-28, 8, -1,-16,-29,-37,-19,-18, -8, -1, 6, 26,-28; /M: SY='V'; M= 18,-18,-13,-23,-18,-10,-17,-23, 9,-14, 0, 0,-16,-17,-18,-17, 0, 3, 19,-25,-14,-18; /M: SY='R'; M=-11, -4,-27, -4, 4,-25,-16, -7,-28, 32,-26,-12, 1,-14, 8, 38, -2, -5,-18,-23,-12, 4; /M: SY='N'; M= 0, 6,-19, -1, 0,-21,-11, -5,-17, 3,-20,-11, 13,-15, 6, 5, 8, 4,-14,-29,-15, 2; /I: E1=0; IE=-105; DE=-105;» more |
Numerical results [info]
| Total number of hits | 41 in 41 different sequences |
| Number of true positive hits | 41 in 41 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Matrix type [info] | protein_domain |
| Scaling database [info] | reversed |
| Author [info] | CJA_Sigrist |
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 1 |
| Feature key [info] | DOMAIN |
| Feature description [info] | CCT |
| Version [info] | 5 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
41 sequences
APRR1_ARATH (Q9LKL2 ), APRR3_ARATH (Q9LVG4 ), APRR5_ARATH (Q6LA42 ), APRR7_ARATH (Q93WK5 ), APRR9_ARATH (Q8L500 ), CIA2_ARATH (Q9LU68 ), CO3_ORYSJ (O82117 ), COL10_ARATH (Q9LUA9 ), COL11_ARATH (O23379 ), COL12_ARATH (Q9LJ44 ), COL13_ARATH (O82256 ), COL14_ARATH (O22800 ), COL15_ARATH (Q9C7E8 ), COL16_ARATH (Q8RWD0 ), COL1_ARATH (O50055 ), COL2_ARATH (Q96502 ), COL3_ARATH (Q9SK53 ), COL4_ARATH (Q940T9 ), COL5_ARATH (Q9FHH8 ), COL6_ARATH (Q8LG76 ), COL7_ARATH (Q9C9A9 ), COL8_ARATH (Q9M9B3 ), COL9_ARATH (Q9SSE5 ), CONS_ARATH (Q39057 ), GAT17_ORYSJ (Q6Z433 ), GAT18_ORYSI (A2XKR7 ), GAT18_ORYSJ (Q10F25 ), GAT19_ORYSI (B8AR30 ), GAT19_ORYSJ (Q0DNU1 ), GAT20_ORYSJ (Q5Z4U5 ), GAT24_ARATH (Q8GXL7 ), GAT25_ARATH (Q9LRH6 ), GAT28_ARATH (Q8H1G0 ), GHD7_ORYSJ (E5RQA1 ), HD1_ORYSJ (Q9FDX8 ), PRR1_ORYSJ (Q689G9 ), PRR37_ORYSI (A2YQ93 ), PRR37_ORYSJ (Q0D3B6 ), PRR73_ORYSI (A2XFB7 ), PRR73_ORYSJ (Q10N34 ), PRR95_ORYSJ (Q689G6 )» more
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| PDB [Detailed view] |
3 PDB
7C9O; 7CVO; 7CVQ |
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