PROSITE entry PS51036
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General information about the entry
| PURL [info] | https://purl.expasy.org/prosite/signature/PS51036 |
| Entry name [info] | ZF_A20 |
| Accession [info] | PS51036 |
| Entry type [info] | MATRIX |
| Date [info] |
01-NOV-2004 CREATED;
01-OCT-2013 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC51036 |
| Associated ProRule [info] | PRU00451 |
Name and characterization of the entry
| Description [info] | Zinc finger A20-type profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=35; /DISJOINT: DEFINITION=PROTECT; N1=4; N2=32; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.1970136; R2=0.0075218; TEXT='NScore'; /CUT_OFF: LEVEL=0; SCORE=838; N_SCORE=7.5; MODE=1; TEXT='R'; /CUT_OFF: LEVEL=-1; SCORE=573; N_SCORE=5.5; MODE=1; TEXT='R?'; /DEFAULT: M0=-6; D=-30; I=-30; B1=-100; E1=-100; MI=-105; MD=-105; IM=-105; DM=-105; ... A B C D E F G H I K L M N P Q R S T V W Y Z /I: B1=0; BI=-105; BD=-105; /M: SY='P'; M= 2, -2,-25, 0, 1,-18, -5, -3,-15, 1,-13,-12, -4, 10, -2, -7, 5, 0,-15,-28,-15, -3; /M: SY='P'; M= 3, -7,-19, -7, 4,-23,-11, -6,-12, -1,-11,-12, -8, 21, 14, -7, 2, 10,-17,-28,-12, 6; /M: SY='A'; M= 4, 1,-18, 0, 4,-23, -3,-10,-10, 2, -9, -5, 2, -2, 0,-11, 3, 4,-13,-27,-16, 2; /M: SY='P'; M= 2, -1,-27, 8, 4,-30,-12, -4,-20, 4,-17,-16, -9, 30, 9, -1, -2, 1,-18,-32,-16, 2; /M: SY='P'; M= 0,-12,-21,-13, -5,-14,-10, -8, -3, 2, -4, 1,-10, 4, 1, 0, -4, 2, -7,-23, -7, -4; /M: SY='M'; M= -5, -8,-17, -7, 2, -1,-15,-11, -6, 9, 3, 13,-12, -3, -4, 5, -9, -7, -8,-19, 6, -1; /M: SY='C'; M=-30,-20,170,-30, 10,-30,-40,-50,-20,-30, 0,-20,-10,-30,-20,-20,-20,-20,-20,-20,-60, 0; /M: SY='R'; M= 5, -9,-19, -6, 0,-14,-15,-12,-10, 3,-10, -1,-11, -7, 14, 19, -2, -6, -3,-20, -9, 3; /I: I=-8; MD=-27; /M: SY='N'; M= 4, 5,-19, -2, -4,-13, -4,-13,-10, 6,-15, 0, 14, -9, 5, 7, 5, 2,-11,-30,-18, -3; D=-8; /I: I=-8; MI=0; MD=-27; IM=0; DM=-27; /M: SY='G'; M= 6, 9,-26, -2, -9,-22, 36,-20, -7, -4,-18,-11, 18,-13,-11,-17, 5, -5,-20,-21,-31,-10; D=-8; /I: I=-8; DM=-27; /M: SY='C'; M=-30,-20,170,-30, 10,-30,-40,-50,-20,-30, 0,-20,-10,-30,-20,-20,-20,-20,-20,-20,-60, 0; /M: SY='G'; M= 1, -1,-33, -3,-11,-25, 43,-22,-10, -4,-15,-15, -5, 2,-15,-15, -1,-12,-22, -6,-21,-13; /M: SY='F'; M=-17,-22,-31,-37,-30, 66,-27,-15, -3, -9, 13,-14, -5,-31,-18, -9, -9,-12, 3, 0, 24,-28; /M: SY='F'; M=-22,-23,-37,-23,-25, 44,-24,-17, -2,-10, 18,-13,-20,-23,-18, -9,-12,-11, 7, 17, 41,-25; /M: SY='G'; M= 0, -3,-32,-11,-18,-20, 53,-24, -2,-10, -9,-10, -4,-16,-20,-18, -3,-13,-18, 1,-19,-18; /M: SY='N'; M= 8, 12,-19, 0, -8,-14, -6, -8, -5, -2,-15, -4, 28,-14, -4,-13, 15, 18, -8,-49,-25, -8; /M: SY='P'; M= 3,-12,-11, -9, -1,-23,-13,-10,-12, -1,-16,-18,-15, 30, -2, -5, 2, 5,-11,-31,-20, -5; /M: SY='Q'; M= 11, -3,-19, -3, 9,-20,-12,-10,-13, 8,-12, 4, -1, -6, 20, 9, 2, 0,-11,-27,-18, 11; /M: SY='T'; M= -5, -4,-11,-16,-16, 1,-16,-16, -6,-10, -4, -7, 8,-15, -8,-20, 6, 15, -3,-19, -7,-13; /M: SY='E'; M= 3, 8, -9, 2, 19,-25,-13, -2,-13, 12,-11, 5, 19,-11, 13, -4, -5, -4,-22,-32,-22, 18; /M: SY='G'; M= -1, 13,-26, 0, -8,-25, 34,-11,-10, -4,-19,-12, 24, -8,-12,-18, -1, -9,-27,-24,-30, -9; /M: SY='Y'; M=-14,-19,-20,-21,-18, 27,-23, -8, 11,-10, 29, 12,-18,-30,-17, -9,-18, -6, 10, -4, 32,-17; /M: SY='C'; M=-30,-20,170,-30, 10,-30,-40,-50,-20,-30, 0,-20,-10,-30,-20,-20,-20,-20,-20,-20,-60, 0; /M: SY='S'; M= 7, -1,-20, -4, 3,-15, -7, 1,-10, 1,-15, -9, 3,-10, 0, -7, 24, 13,-13,-31,-18, -2; /M: SY='K'; M= -1, -4,-12, -4, 13,-13,-17,-13,-12, 16, -7, 9, -2, -5, 2, 1, -4, -6,-11,-20, -7, 9; /M: SY='C'; M=-30,-20,170,-30, 10,-30,-40,-50,-20,-30, 0,-20,-10,-30,-20,-20,-20,-20,-20,-20,-60, 0; /M: SY='F'; M=-25,-27,-40,-27,-21, 44,-25, -4, -9,-10, 13,-13,-24,-24,-10, -3,-12,-15, 0, 28, 44,-20; /M: SY='R'; M= -3, -7,-22, -8, 1,-13,-13, -2,-12, 9,-12, 6, -2, -7, 12, 23, -6,-14,-11,-20, -9, 3; /M: SY='D'; M= 2, 7,-15, 18, 18,-26,-12,-11,-24, 7,-11,-14, -3, 3, 6, -1, 0,-11,-18,-23,-16, 13; /M: SY='M'; M= -2, -7,-22,-10, -2, -3,-17, 0, -7, 2, -2, 4, -1,-11, 0, 0, -2, -3, -5,-24, -3, -2; /M: SY='Q'; M= -2,-11, -7,-12, 0, -6,-21,-10, -5, -7, 2, 0,-12,-13, 24, 8, -9, 1, -8,-15, 4, 9; /M: SY='Q'; M= 3, -4,-19, -6, 4,-11,-14, -2,-11, 7, -8, 9, 1,-10, 10, 10, -5, -7,-11,-27,-12, 5; /M: SY='K'; M= -2, -1,-21, 1, 10,-19,-16, 0,-18, 12,-11, 4, 1, -6, 12, 11, -3, -8,-17,-21, -7, 9; /M: SY='Q'; M= 8, -6,-21, -5, 11,-24, -3,-11,-16, 8,-15, 0, -6, -3, 25, 12, -2, -6,-17,-16,-17, 15; /M: SY='Q'; M= 1, -2,-20, -3, 6,-15,-12, -1,-17, 5,-17,-10, 1, 5, 13, 6, 4, -2,-20,-26,-15, 6; /I: E1=0; IE=-105; DE=-105;» more |
Numerical results [info]
| Total number of hits | 66 in 47 different sequences |
| Number of true positive hits | 66 in 47 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 1 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 98.51 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 7 |
| Matrix type [info] | protein_domain |
| Scaling database [info] | window20 |
| Author [info] | N_Hulo |
| Feature key [info] | ZN_FING |
| Feature description [info] | A20-type |
| Version [info] | 3 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
47 sequences
OTU7A_HUMAN (Q8TE49), OTU7A_MOUSE (Q8R554), OTU7B_HUMAN (Q6GQQ9), OTU7B_MOUSE (B2RUR8), RABX5_BOVIN (O18973), RABX5_HUMAN (Q9UJ41), RABX5_MOUSE (Q9JM13), SAP10_ARATH (Q9STJ9), SAP10_ORYSJ (Q69LE0), SAP11_ORYSJ (Q84PD8), SAP12_ORYSJ (Q6Z541), SAP18_ORYSJ (P0C282), SAP1_ARATH (Q6NNI8), SAP1_ORYSI (A2Z2J6), SAP1_ORYSJ (A3C039), SAP2_ARATH (Q8H0X0), SAP2_ORYSJ (Q942F8), SAP3_ARATH (Q9ZNU9), SAP3_ORYSJ (Q5JN07), SAP4_ARATH (Q9SJM6), SAP4_ORYSJ (Q6H7P8), SAP5_ARATH (Q9LHJ8), SAP5_ORYSJ (Q6H754), SAP6_ARATH (Q94B40), SAP6_ORYSJ (Q852K5), SAP7_ARATH (Q9SZ69), SAP7_ORYSJ (Q852K6), SAP8_ARATH (Q3EA33), SAP8_ORYSI (A2YEZ6), SAP8_ORYSJ (A3BDI8), SAP9_ARATH (O49663), SAP9_ORYSJ (Q7Y1W9), TNAP3_HUMAN (P21580), TNAP3_MACFA (Q4R8W3), TNAP3_MOUSE (Q60769), ZFAN3_HUMAN (Q9H8U3), ZFAN3_MOUSE (Q497H0), ZFAN3_RAT (Q5U2M7), ZFAN3_XENLA (Q66J85), ZFAN5_HUMAN (O76080), ZFAN5_MOUSE (O88878), ZFAN5_RAT (B5DF11), ZFAN6_BOVIN (Q3SZY7), ZFAN6_HUMAN (Q6FIF0), ZFAN6_MOUSE (Q9DCH6), ZFAN6_PONAB (Q5R7S6), ZFAN6_RAT (Q6DGF4)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
1 sequence
RL37B_CANAL (A0A1D8PF45) |
| PDB [Detailed view] |
30 PDB
2C7M; 2C7N; 2EQE; 2EQF; 2EQG; 2FID; 2FIF; 2KZY; 2L00; 3OJ3; 3OJ4; 3VUW; 3VUX; 3VUY; 7PZY; 7Q08; 7Q0F; 7Q0P; 7Q0R; 7QXW; 8C3A; 8CQ7; 8CQW; 8CRE; 8OEQ; 8OGJ; 8OH6; 8OI5; 8OJ3; 8Q5I » more |