PROSITE entry PS51083
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General information about the entry
Entry name [info] | ZF_HIT |
Accession [info] | PS51083 |
Entry type [info] | MATRIX |
Date [info] |
01-FEB-2005 CREATED;
10-MAY-2017 DATA UPDATE; 03-MAY-2023 INFO UPDATE. |
PROSITE Doc. [info] | PDOC51083 |
Associated ProRule [info] | PRU00453 |
Name and characterization of the entry
Description [info] | Zinc finger HIT-type profile. |
Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=34; /DISJOINT: DEFINITION=PROTECT; N1=4; N2=31; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.5706942; R2=0.0090412; TEXT='NScore'; /NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=833.5309448; R2=2.8289084; PRIORITY=1; TEXT='Heuristic 5.0%'; /CUT_OFF: LEVEL=0; SCORE=656; H_SCORE=2689; N_SCORE=8.5; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=435; H_SCORE=2064; N_SCORE=6.5; MODE=1; TEXT='?'; /DEFAULT: M0=-10; D=-30; I=-30; B1=-200; E1=-200; MI=-105; MD=-105; IM=-105; DM=-105; ... A B C D E F G H I K L M N P Q R S T V W Y Z /I: B1=0; BI=-105; BD=-105; /M: SY='C'; M= 0,-30, 90,-30,-40,-20,-30,-30,-10,-30,-10,-10,-30,-30,-30,-30,-10,-10,-10,-20,-20,-30; /M: SY='S'; M= 2, -8,-16, -7, -1,-19, -2,-11,-17, -6,-19,-12, -4,-16, -5,-12, 7, -6,-13,-25,-15, -2; /M: SY='I'; M= -3,-28,-10,-28,-22, -4,-32,-27, 27,-23, 12, 8,-27,-24,-22,-26,-16, -3, 27,-27,-10,-22; /M: SY='C'; M= 0,-30, 90,-30,-40,-20,-30,-30,-10,-30,-10,-10,-30,-30,-30,-30,-10,-10,-10,-20,-20,-30; /I: I=-8; MI=0; MD=-27; IM=0; DM=-27; /M: SY='G'; M= -4, -8,-25,-11, -8,-23, 8, -9,-24, -5,-21,-14, 0,-16, -5, -7, 0, -9,-19,-24,-18, -7; /M: SY='K'; M= -4, -4,-23, -7, 1,-21, -8,-10,-18, 3,-18,-11, 1,-16, 0, -6, 1, -5,-12,-27,-16, 0; /I: I=-9; MD=-32; /M: SY='N'; M= -9, 5,-21, 0, 5,-17, -9, 1,-19, 3,-18,-11, 13,-13, 5, -2, 3, -5,-16,-21, -7, 4; D=-9; /I: I=-9; MI=-32; IM=-32; DM=-32; /M: SY='E'; M= -5, -5,-20, -1, 6,-23,-18,-13,-19, -1,-19,-12, -7, -1, -1, -9, 0, -3,-13,-29,-19, 4; /M: SY='S'; M= 4,-10,-15,-11, -7,-14, -6, -6,-19, -6,-18,-12, -4,-11, -6, -9, 13, -1,-17,-20,-11, -7; /M: SY='K'; M=-11, -6,-24,-13, 0,-23,-21,-10,-19, 21,-13, -7, -3,-14, 3, 7, -4,-10,-14,-27,-15, 1; /I: I=-9; MI=0; MD=-32; IM=0; DM=-32; /M: SY='Y'; M=-15,-27,-18,-27,-18, 23,-26, 16,-11,-28,-11,-10,-17,-27, -9,-19,-13,-16,-11, 13, 58,-18; /M: SY='K'; M= -5, -2,-23,-10, 1,-26,-16, -8,-23, 18,-18,-11, 6,-13, 3, 14, 5, 5,-18,-29,-20, 1; /M: SY='C'; M= -1,-30, 82,-30,-39,-14,-30,-29, -9,-30, -9, -9,-30,-31,-30,-30,-11,-11,-10,-18,-16,-30; /M: SY='P'; M= -6,-19,-20,-13,-12,-31,-21,-21,-18,-11,-20,-13,-17, 38,-11,-19, -7, 2, -8,-34,-25,-11; /M: SY='R'; M= -3, -9,-14,-16, -6,-22,-13, -9,-21, 9,-16,-10, -2,-18, -1, 12, -1, -6,-18,-27,-17, -5; /M: SY='C'; M= 0,-30, 90,-30,-40,-20,-30,-30,-10,-30,-10,-10,-30,-30,-30,-30,-10,-10,-10,-20,-20,-30; /M: SY='G'; M= -8, -2,-26, -3, -3,-20, 5, -8,-25, -8,-23,-15, 4,-16, -4, -9, 2,-10,-21,-23,-15, -4; /M: SY='V'; M= 1,-15,-14,-14, -9,-13,-21,-19, 1,-10, -1, 0,-14,-18,-10,-13, -5, -3, 3,-27,-15,-10; /M: SY='R'; M=-11,-16,-22,-21, -8,-16,-25, -9,-16, 8, -8, -3,-10,-13, 0, 9,-10,-11,-15,-22, -8, -7; /M: SY='Y'; M=-11,-24,-16,-24,-18, 15,-26, 1, -5,-18, -7, -7,-16,-25,-13,-19,-10, -1, -4, 1, 31,-18; /M: SY='C'; M= 0,-30, 90,-30,-40,-20,-30,-30,-10,-30,-10,-10,-30,-30,-30,-30,-10,-10,-10,-20,-20,-30; /M: SY='S'; M= 8, -3, -3, -3, -4,-20, -2,-12,-19, -4,-19,-11, 6,-12, -4,-12, 33, 10,-18,-28,-20, -4; /M: SY='L'; M= -7,-35, -8,-35,-27, -3,-36,-29, 23,-21, 27, 15,-29,-27,-31,-24,-18, -7, 19,-24,-10,-26; /M: SY='K'; M= 3, -8,-22, -9, 4,-26,-12,-12,-19, 5,-19,-12, -7, -6, 0, 2, 0, -6,-12,-31,-20, 2; /M: SY='C'; M= 0,-30, 90,-30,-40,-20,-30,-30,-10,-30,-10,-10,-30,-30,-30,-30,-10,-10,-10,-20,-20,-30; /M: SY='Y'; M=-12,-19,-18,-21,-15, 10,-22, 0, -8,-14, -8, -5,-10,-25, -9,-15, -7, -9, -9, -4, 22,-14; /M: SY='K'; M=-10, 0,-29, -7, 7,-28,-16, -7,-27, 26,-20,-10, 4,-13, 10, 15, -1, -7,-20,-29,-19, 7; /I: I=-7; MI=0; MD=-23; IM=0; DM=-23; I=-7,-7,-7,-7,-7,-7,-7,-7,-7,-7,-7,-7,-7,-7,-7,-7,-7,-7,-7,-40,-7,-7; /M: SY='K'; M= -7,-12,-19,-16, -6,-18,-24,-16, -5, 4, -3, -2, -7,-17, -4, -3, -3, 2, -2,-27,-16, -6; /M: SY='H'; M=-20, 0,-30,-10, 0,-10,-20, 80,-30,-10,-30,-20, 10,-20, 0, 0,-10,-20,-30,-20, 20, 0; /M: SY='K'; M=-10, 5,-27, -2, 8,-27,-14, -6,-25, 22,-21,-11, 10,-13, 9, 7, 4, -6,-19,-31,-19, 8; /I: I=-6; MD=-22; /M: SY='E'; M= -6, 5,-26, 11, 18,-24,-17, -8,-21, 3,-22,-15, -1,-12, 6, -3, 2, -2,-16,-29,-19, 13; D=-6; /I: I=-6; MD=-22; /M: SY='T'; M= -5, -4,-17, -4, 2,-19,-17,-11,-13, -1,-10, -5, -1,-12, 5, -2, 3, 8, -9,-21,-15, 2; D=-6; /I: I=-6; MD=-22; /M: SY='R'; M= -6, -7,-19, -7, 0,-16,-16, -7,-15, 2,-11, -8, -4, -9, 0, 7, -4, -1,-12,-21,-13, -1; D=-6; /I: I=-6; MI=0; MD=-22; IM=0; DM=-22; /M: SY='C'; M= 0,-28, 79,-28,-36,-20,-28, 10,-11,-28,-11,-10,-27,-28,-28,-28, -9, -9,-10,-20,-18,-28; /I: E1=0; IE=-105; DE=-105;» more |
Numerical results [info]
Total number of hits | 22 in 22 different sequences |
Number of true positive hits | 22 in 22 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 0 |
Number of false negative sequences | 7 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 100.00 % |
Recall (true positives / (true positives + false negatives)) | 75.86 % |
Comments [info]
Matrix type [info] | protein_domain |
Scaling database [info] | window20 |
Author [info] | N_Hulo |
Taxonomic range [info] | Eukaryotes |
Maximum number of repetitions [info] | 1 |
Feature key [info] | ZN_FING |
Feature description [info] | HIT-type |
Version [info] | 5 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
22 sequences
BCD1_HUMAN (Q9NWK9 ), BCD1_MOUSE (Q3UFB2 ), BCD1_PONAB (Q5RF97 ), BCD1_SCHPO (O74906 ), BCD1_YEAST (P38772 ), HIT1_YEAST (P46973 ), SWC6_ARATH (Q9FHW2 ), VPS71_SCHPO (O59669 ), VPS71_YEAST (Q03433 ), YEKJ_SCHPO (O36031 ), ZNHI1_BOVIN (Q24JY4 ), ZNHI1_DICDI (Q54NW0 ), ZNHI1_HUMAN (O43257 ), ZNHI1_MOUSE (Q8R331 ), ZNHI2_BOVIN (Q2TBW5 ), ZNHI2_HUMAN (Q9UHR6 ), ZNHI2_MOUSE (Q9QY66 ), ZNHI3_BOVIN (Q2KIH1 ), ZNHI3_HUMAN (Q15649 ), ZNHI3_MACMU (Q6UIM1 ), ZNHI3_MOUSE (Q9CQK1 ), ZNHI3_PANTR (Q6UIM2 )» more
|
UniProtKB/Swiss-Prot False negative sequences |
7 sequences
DDX59_HUMAN (Q5T1V6 ), DDX59_MOUSE (Q9DBN9 ), DDX59_RAT (Q66HG7 ), IN80B_HUMAN (Q9C086 ), IN80B_MOUSE (Q99PT3 ), RH41_ARATH (Q3EBD3 ), RH41_ORYSJ (Q0E2Z7 )» more |
PDB [Detailed view] |
6 PDB
1X4S; 2N94; 2N95; 2YQQ; 6GEJ; 6GEN |