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| Entry: PS51133 |
General information about the entry
| Entry name [info] | ZF_TFIIS_2 |
| Accession [info] | PS51133 |
| Entry type [info] | MATRIX |
| Date [info] |
01-JUN-2005 CREATED;
10-MAY-2017 DATA UPDATE; 13-NOV-2019 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00383 |
| Associated ProRule [info] | PRU00472 |
Name and characterization of the entry
| Description [info] | Zinc finger TFIIS-type profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=41; /DISJOINT: DEFINITION=PROTECT; N1=5; N2=37; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.4266217; R2=0.0051143; TEXT='NScore'; /NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=4801.4287109; R2=1.2132797; PRIORITY=1; TEXT='Heuristic 5.0%'; /CUT_OFF: LEVEL=0; SCORE=1384; H_SCORE=6481; N_SCORE=8.5; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=992; H_SCORE=6005; N_SCORE=6.5; MODE=1; TEXT='?'; /DEFAULT: M0=-23; D=-20; I=-20; B1=-200; E1=-200; MI=-105; MD=-105; IM=-105; DM=-105; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; BI=-105; BD=-105; /M: SY='T'; M= -17, -49, 11, 4, -34, 0, -14, 14, -6, -25, -36, -22, -30, -19, 5, 33, 36, 3, -54, 6; /M: SY='D'; M= -2, -52, 51, 20, -31, -11, -33, -44, 13, -21, -8, 31, -45, 25, -2, 0, -3, -41, -12, -6; /M: SY='W'; M= 4, -52, -42, 22, 17, -52, 33, 28, 13, -6, -30, -28, -48, -35, -1, -31, -3, 10, 53, 6; /M: SY='K'; M= -26, -54, -32, 29, -52, -41, -38, -9, 46, -35, -39, 11, 35, 26, 8, -15, 17, -3, -56, -45; /M: SY='C'; M= -79, 157, -99, -99, -89, -94, -99, -96, -94, -86, -87, -85,-109,-102,-101, -81, -79, -83,-119,-100; /I: I=-6; MD=-32; /M: SY='P'; M= -33, -63, -34, 3, -43, 6, -43, -51, 2, -48, -46, -42, 95, -1, 2, -16, -23, -34, -54, -11; D=-6; /I: I=-6; MI=-32; IM=-32; DM=-32; /M: SY='K'; M= 3, -52, 4, 12, -35, -22, -34, -47, 61, -42, -42, 31, -44, 11, 25, -6, -30, -20, -54, -27; /I: I=-5; MI=0; MD=-25; IM=0; DM=-25; /M: SY='C'; M= -79, 157, -99, -99, -89, -94, -99, -96, -94, -86, -87, -85,-109,-102,-101, -81, -79, -83,-119,-100; /M: SY='G'; M= -21, -54, 1, -32, -57, 65, 44, -62, 31, -58, -47, 6, -27, 2, -11, 3, -22, -57, -56, -45; /M: SY='H'; M= -30, -32, -28, -16, -4, 4, 87, -55, 16, -51, -41, 54, -47, 16, -30, 31, -28, -54, -61, -24; /M: SY='N'; M= -29, -54, 29, 20, -53, -13, 34, -41, 27, -41, -7, 40, 7, -12, 36, -6, -9, -44, -60, -30; /M: SY='E'; M= -38, -54, 10, 58, -28, 1, -20, -54, 37, -52, -22, 38, -41, -7, 16, -20, -4, -33, -58, -45; /M: SY='A'; M= 57, 40, -47, -44, -43, -18, -47, -16, -43, -12, 39, -19, -47, -41, -47, -20, 30, 16, -57, -28; /M: SY='Y'; M= -6, -49, -48, -34, 16, -51, 24, 1, -41, -11, 1, -42, -52, -11, -12, 5, 19, 41, 23, 53; /I: I=-6; MD=-29; /M: SY='F'; M= -43, -56, -56, -42, 79, -55, -35, -34, -48, -29, -33, -52, 24, -50, -34, -21, -28, -30, 65, 78; D=-6; /I: I=-6; MI=-29; MD=-29; IM=-29; DM=-29; /M: SY='F'; M= -28, -51, -53, -39, 62, -54, 22, -7, -21, 1, 37, -22, -55, -35, -11, -24, 10, -1, 62, 36; D=-6; /I: I=-6; DM=-29; /M: SY='Q'; M= -36, -54, -34, 18, -50, -47, -9, -3, -26, -11, 38, -13, -44, 89, -29, -4, 30, -32, -54, -38; /M: SY='M'; M= 5, -49, -31, -41, -23, -50, -42, 19, 4, 37, 48, -43, -12, 4, 2, 11, -21, -2, -52, -36; /I: I=-6; MD=-32; /M: SY='Q'; M= -26, -62, -34, -15, -65, -46, 23, -53, -19, -48, -10, -29, -1, 113, -2, -28, -40, -55, -52, -38; D=-6; /I: I=-6; MI=-32; IM=-32; DM=-32; /M: SY='T'; M= -27, -45, -39, 0, -41, -16, -44, 24, -37, -1, 9, -32, -42, 16, -43, -7, 78, -19, -59, -41; /M: SY='R'; M= -16, -59, -41, -29, -54, -16, -32, -59, 25, -43, -42, -33, -51, -20, 98, -37, -42, -52, -53, -41; /I: I=-5; MD=-27; /M: SY='S'; M= 19, -19, -22, -14, -52, -16, -39, -17, -9, -50, -44, -29, -45, -28, 27, 73, -23, -26, -59, -45; D=-5; /I: I=-5; MI=-27; MD=-27; IM=-27; DM=-27; /M: SY='A'; M= 71, -2, -43, -16, -54, 18, -46, -33, -18, -39, -41, -37, -45, -36, -32, 18, -23, -28, -55, -49; D=-5; /I: I=-5; DM=-27; /M: SY='D'; M= -45, -59, 101, 25, -59, -44, -31, -62, -32, -60, -58, -17, -44, -30, -41, -20, -23, -59, -71, 0; D=-5; /I: I=-5; DM=-27; /M: SY='E'; M= -37, -56, -2, 93, -58, -51, -32, -55, -10, -52, -48, 9, -35, -15, -30, -32, 12, -27, -60, -50; /M: SY='P'; M= 7, -57, -39, 1, -59, 39, -44, -53, -39, -57, -18, -11, 87, -38, -48, 13, -20, -52, -56, -55; /M: SY='M'; M= -19, -50, -44, 9, -40, -47, -35, -18, -37, 0, 98, -40, 37, 31, -39, 13, -1, -31, -54, -37; /M: SY='T'; M= -11, -42, -39, -39, -43, -45, -45, -4, -35, -11, -34, -29, -41, -38, 0, 20, 87, -12, -62, -42; /M: SY='V'; M= -37, -48, -53, -47, -31, -59, -50, 35, -15, 34, -19, -46, -52, -43, 22, -30, 31, 43, -56, -37; /M: SY='F'; M= -38, -51, -59, -40, 96, -59, -41, 11, -28, -16, -1, -51, -60, -53, 5, -49, -43, -17, -23, 39; /M: SY='Y'; M= -15, 14, -52, -52, 51, -55, 22, -21, -46, -24, -28, -49, -60, -44, -44, -43, -41, 11, -17, 101; /M: SY='V'; M= -14, -11, -33, -2, -14, -52, -44, 4, 30, -10, -15, -24, -47, -22, 12, -16, 36, 40, -55, -9; /M: SY='C'; M= -79, 157, -99, -99, -89, -94, -99, -96, -94, -86, -87, -85,-109,-102,-101, -81, -79, -83,-119,-100; /I: I=-5; MD=-27; /M: SY='C'; M= -5, 56, -26, -19, -43, -49, -28, -13, 14, 2, 3, -8, 1, -19, -9, -8, 43, 8, -60, -23; D=-5; /I: I=-5; MI=0; MD=-27; IM=0; DM=-27; /M: SY='N'; M= -14, -52, 34, 24, -54, -20, 33, -55, 34, -52, -24, 47, -44, -3, 8, 22, -18, -42, -61, -24; /M: SY='C'; M= -79, 157, -99, -99, -89, -94, -99, -96, -94, -86, -87, -85,-109,-102,-101, -81, -79, -83,-119,-100; /I: I=-6; MD=-32; /M: SY='G'; M= -14, -54, -30, -16, -39, 65, -25, -58, 31, -45, -27, 11, -46, 21, -13, -1, -33, -54, -51, -9; D=-6; /I: I=-6; MI=-32; IM=-32; DM=-32; /M: SY='H'; M= -44, -55, -22, -2, 25, -47, 99, -51, 35, -44, -36, 26, -48, -7, -26, -19, -39, -52, -46, 44; /M: SY='R'; M= -24, -55, -29, -15, -34, -49, 22, -14, 28, -20, -36, 8, -48, 32, 62, -24, 10, -14, 40, -14; /M: SY='W'; M= -50, -65, -50, -2, 56, -54, -57, -41, -46, -37, -12, -60, -55, -31, -36, -52, -22, -32, 148, 17; /M: SY='R'; M= -24, -52, -36, -8, -51, -48, -36, -15, 47, -47, -40, -9, -45, -14, 64, 6, 38, -22, -56, -42; /I: E1=0; IE=-105; DE=-105;» more |
Numerical results [info]
| Total number of hits | 62 in 62 different sequences |
| Number of true positive hits | 62 in 62 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Matrix type [info] | protein_domain |
| Scaling database [info] | window20 |
| Author [info] | N_Hulo |
| Taxonomic range [info] | Archaea, Eukaryotes, Eukaryotic viruses |
| Maximum number of repetitions [info] | 1 |
| Feature key [info] | ZN_FING |
| Feature description [info] | TFIIS-type |
| Version [info] | 5 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
62 sequences
081R_FRG3G (Q6GZP4 ), RDO2_ARATH (Q9ZVH8 ), RP30_VACCC (P21082 ), RP30_VACCW (P21603 ), RP30_VAR67 (P33796 ), RPA12_BOVIN (Q1RMP0 ), RPA12_HUMAN (Q9P1U0 ), RPA12_MACMU (Q5TM50 ), RPA12_MOUSE (Q791N7 ), RPA12_PANTR (Q1XHV8 ), RPA12_RAT (Q6MFY5 ), RPA12_SCHPO (O94703 ), RPA12_YEAST (P32529 ), RPB9A_ARATH (Q6NLH0 ), RPB9B_ARATH (Q8L5V0 ), RPB9_ASHGO (Q755B3 ), RPB9_BOVIN (Q32P73 ), RPB9_CANGA (Q6FS48 ), RPB9_DROME (P36958 ), RPB9_ENCCU (Q8SQU1 ), RPB9_HUMAN (P36954 ), RPB9_MOUSE (P60898 ), RPB9_PIG (P60899 ), RPB9_SCHPO (O74635 ), RPB9_YEAST (P27999 ), RPC10_BOVIN (Q2M2S7 ), RPC10_HUMAN (Q9Y2Y1 ), RPC10_MOUSE (Q9CQZ7 ), RPC10_SCHPO (O13896 ), RPC10_YEAST (Q04307 ), RPO5_FOWPN (Q9J5C0 ), RPO5_VACCA (O57187 ), TCEA1_BOVIN (Q29RL9 ), TCEA1_DICDI (Q54YG9 ), TCEA1_HUMAN (P23193 ), TCEA1_MOUSE (P10711 ), TCEA1_RAT (Q4KLL0 ), TCEA2_BOVIN (Q148K0 ), TCEA2_HUMAN (Q15560 ), TCEA2_MOUSE (Q9QVN7 ), TCEA2_RAT (Q63799 ), TCEA3_BOVIN (Q2KI09 ), TCEA3_HUMAN (O75764 ), TCEA3_MOUSE (P23881 ), TFS2_ASFB7 (P27948 ), TFS2_ASFK5 (P0C8F5 ), TFS2_ASFM2 (P0C8F6 ), TFS2_ASFP4 (P0C8F7 ), TFS2_ASFWA (P0C8F8 ), TFS2_CAEEL (P52652 ), TFS2_DROME (P20232 ), TFS2_MIMIV (Q5UQS8 ), TFS2_SCHPO (P49373 ), TFS2_YEAST (P07273 ), TFS_ARCFU (O29033 ), TFS_METJA (Q58548 ), TFS_METTH (O27369 ), TFS_METTL (Q9P9I8 ), TFS_SULAC (Q07271 ), TFS_THECE (Q56254 ), VF349_IIV3 (Q197A5 ), VF349_IIV6 (Q91FH5 )» more
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| PDB [Detailed view] |
167 PDB
1I3Q; 1I50; 1I6H; 1K83; 1NIK; 1NT9; 1PQV; 1QYP; 1R5U; 1R9S; 1R9T; 1SFO; 1TFI; 1TWA; 1TWC; 1TWF; 1TWG; 1TWH; 1WCM; 1Y1V; 1Y1W; 1Y1Y; 1Y77; 2B63; 2B8K; 2E2H; 2E2I; 2E2J; 2JA5; 2JA6; 2JA7; 2JA8; 2NVQ; 2NVT; 2NVX; 2NVY; 2NVZ; 2R7Z; 2R92; 2R93; 2VUM; 2YU9; 3CQZ; 3FKI; 3GTG; 3GTJ; 3GTK; 3GTL; 3GTM; 3GTO; 3GTP; 3GTQ; 3H0G; 3H3V; 3HOU; 3HOV; 3HOW; 3HOX; 3HOY; 3HOZ; 3I4M; 3I4N; 3J0K; 3J1N; 3K1F; 3K7A; 3M3Y; 3M4O; 3PO2; 3PO3; 3RZD; 3RZO; 3S14; 3S15; 3S16; 3S17; 3S1M; 3S1N; 3S1Q; 3S1R; 3S2D; 3S2H; 4A3B; 4A3C; 4A3D; 4A3E; 4A3F; 4A3G; 4A3I; 4A3J; 4A3K; 4A3L; 4A3M; 4A93; 4BBR; 4BBS; 4BXX; 4BXZ; 4BY1; 4BY7; 4C2M; 4C3H; 4C3I; 4C3J; 4V1M; 4V1N; 4V1O; 4X67; 4X6A; 4Y52; 4Y7N; 5C3E; 5C44; 5C4A; 5C4J; 5C4X; 5FJ9; 5FJA; 5FLM; 5FMF; 5FYW; 5FZ5; 5G5L; 5IP7; 5IP9; 5IY6; 5IY7; 5IY8; 5IY9; 5IYA; 5IYB; 5IYC; 5IYD; 5M3M; 5M5W; 5N5Y; 5N5Z; 5N60; 5OA1; 5OIK; 5OQJ; 5OQM; 5OT2; 5SVA; 5U0S; 5U5Q; 5VVR; 5VVS; 5W4U; 5W51; 6BLO; 6BLP; 6BM2; 6BM4; 6BQF; 6DRD; 6EXV; 6GMH; 6GML; 6GYK; 6GYL; 6GYM; 6HLQ; 6HLS; 6I84; 6O6C; 6O9L » more |
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