PROSITE entry PS51300
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General information about the entry
| Entry name [info] | NIRD |
| Accession [info] | PS51300 |
| Entry type [info] | MATRIX |
| Date [info] |
01-MAR-2007 CREATED;
01-OCT-2013 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC51300 |
| Associated ProRule [info] | PRU00633 |
Name and characterization of the entry
| Description [info] | NADH-nitrite reductase subunit D family profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=108; /DISJOINT: DEFINITION=PROTECT; N1=6; N2=103; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.9302852; R2=0.0101442; TEXT='NScore'; /CUT_OFF: LEVEL=0; SCORE=648; N_SCORE=8.5; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=451; N_SCORE=6.5; MODE=1; TEXT='?'; /DEFAULT: M0=-17; D=-120; I=-120; B1=-800; E1=-800; MI=-355; MD=-355; IM=-355; DM=-355; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; BI=-355; BD=-355; /M: SY='M'; M= 15, -37, 2, 7, -33, -19, 24, -5, -23, -20, 62, -9, 2, 8, -2, -20, 23, -1, -47, -27; /M: SY='S'; M= -6, -37, -12, 2, -33, 6, -26, -26, -10, 14, -1, -11, -35, 32, 13, 33, 11, -16, -44, -30; /M: SY='T'; M= -17, 7, 3, 24, -41, -3, 23, -21, -8, -36, -29, 33, -32, 34, 6, -2, 35, -14, -50, -31; /M: SY='W'; M= -41, -62, -63, -43, 21, -41, -59, -37, -8, -34, -37, -56, -45, -36, -36, -46, -49, -49, 159, 17; /M: SY='T'; M= -24, -36, -25, 8, 13, -39, -1, 0, 11, -13, -21, -20, -31, 42, -21, -15, 58, -2, -42, -23; /M: SY='T'; M= 18, -36, 9, -19, -17, -29, -1, -33, 15, -36, -29, 7, 13, 13, 18, 11, 39, -16, -46, -30; /M: SY='V'; M= 26, -35, -46, -41, -21, -42, -46, 48, -40, 12, -8, -41, -41, -38, -42, -28, -20, 52, -45, -27; /M: SY='C'; M= -27, 141, -47, -47, -38, -43, -47, -45, -43, -35, -35, -34, -58, -51, -50, -30, -28, -32, -68, -48; /M: SY='Q'; M= 28, -40, 1, -1, -45, -5, 30, -41, 13, -39, -30, -19, 6, 43, 29, 7, -3, -35, -45, -31; /M: SY='Y'; M= -3, -38, -44, -38, -8, -46, -29, 18, -33, 43, -5, -41, -46, -17, 3, -34, -26, 25, -28, 47; /M: SY='D'; M= 2, -42, 76, 14, -49, 3, -21, -48, -9, -47, -42, 20, -33, -1, -9, 12, -21, -43, -57, -36; /M: SY='D'; M= -9, -45, 82, 27, 5, -33, 15, -42, -21, -40, -38, -9, -33, 6, -27, -22, -25, -27, -50, -4; /M: SY='L'; M= -32, -38, -51, -45, -10, -54, -41, 51, -45, 59, 3, -47, -47, -39, -44, -42, -27, 13, -39, -21; /M: SY='V'; M= -18, -38, -43, -7, -18, -48, -40, 36, -21, 33, 22, -42, 8, -34, -38, -35, -24, 41, 14, -25; /M: SY='P'; M= 10, -48, -11, 3, -47, -32, -35, -31, -28, -41, -33, -35, 97, -29, -38, -13, -23, -1, -47, -44; /M: SY='N'; M= -14, 5, 27, 13, -17, 51, 5, -47, -23, -45, -37, 51, -35, 1, -30, -17, -25, -44, -46, -12; /M: SY='T'; M= -7, -34, -26, -25, -36, -17, 2, -8, -14, -25, -27, -16, -32, -19, 42, 39, 54, -24, -48, -30; /M: SY='G'; M= -16, -44, -31, -41, -49, 88, -37, -56, -36, -52, -41, -17, -2, -34, -43, -16, -34, -50, -40, -44; /M: SY='V'; M= 5, -33, -46, -40, -22, -46, -6, 20, -36, -4, -10, -41, -44, -39, -14, -30, -18, 74, -52, -27; /M: SY='C'; M= 30, 102, -38, -36, -38, 13, -40, -31, -34, -33, -30, -28, -13, -36, -21, -5, 3, 5, -53, -41; /M: SY='A'; M= 66, -29, -38, -31, -34, -14, -40, -12, -32, -23, -21, -33, -36, -30, -36, -13, -18, 40, -45, -35; /M: SY='W'; M= -35, -41, -52, -41, -8, -49, -39, -6, -39, 64, -2, -50, -49, -15, -20, -43, -34, -14, 98, -13; /M: SY='L'; M= -27, -35, -49, -43, 7, -51, -41, 22, -43, 52, -1, -46, -47, -40, -42, -37, -9, 46, -41, -21; /M: SY='D'; M= -9, -45, 61, 33, -49, 18, 8, -49, 0, -47, -40, 17, 17, -1, -3, -20, -25, -45, -52, -37; /I: I=-33; MI=0; MD=-99; IM=0; DM=-99; /M: SY='G'; M= -21, -44, 48, 8, -50, 65, -28, -53, -14, -49, -41, -12, -32, 12, -32, -8, -15, -47, -47, -40; /M: SY='Q'; M= 10, -42, -5, 39, -46, 19, -24, -39, 1, -38, -31, -20, -31, 51, 23, -10, -3, -14, -43, -34; /M: SY='Q'; M= 4, -47, -22, -5, -51, -31, 26, -42, -9, -37, -25, -17, -6, 96, 9, 1, -26, -41, -41, -27; /M: SY='V'; M= 2, -35, -46, -38, -21, -46, -45, 35, -37, 6, -8, -41, -43, 10, -39, -30, -20, 67, -48, -27; /M: SY='A'; M= 80, -27, -34, -26, -42, -15, -36, -31, -29, -33, -27, -29, -33, -25, -33, -7, -18, -18, -42, -38; /M: SY='I'; M= -2, -36, -49, -43, -15, -48, -42, 46, -42, 39, 24, -44, -44, -38, -42, -36, -23, 42, -43, -24; /M: SY='F'; M= -40, -37, -54, -49, 99, -50, -35, -12, -45, 12, -14, -44, -52, -53, -42, -40, -33, -5, -10, 12; /M: SY='R'; M= -35, -47, -32, -24, 22, -44, 31, -36, 5, -23, -24, -26, -44, -14, 75, -30, -32, -36, -22, 58; /M: SY='L'; M= -28, 28, -23, -35, -21, -46, -38, 12, -20, 39, 6, -38, 37, -35, -21, -32, 9, 28, -45, -28; /I: I=-25; MD=-74; /M: SY='P'; M= -19, -49, 13, 0, -34, 3, 16, -36, -10, -12, -29, -27, 50, 8, 23, -28, -17, -19, -40, 21; D=-25; /I: I=-25; MD=-74; /M: SY='H'; M= -23, -64, 26, 9, -66, 4, 32, -67, -9, -62, -53, -17, -21, 3, -14, -38, -46, -63, -69, -49; D=-25; /I: I=-25; MI=0; MD=-74; IM=0; DM=-74; /M: SY='D'; M= -6, -51, 60, -9, -57, 14, -35, -54, -35, -37, -49, 9, -25, -33, -42, -9, -8, -50, -66, -48; D=-25; /I: I=-25; DM=-74; /M: SY='G'; M= -23, -44, 43, 32, -49, 46, -25, -46, -21, -46, -39, 3, 10, 22, -18, 3, -26, -27, -48, -39; /M: SY='R'; M= -1, -40, -1, 21, -43, 6, 6, -40, 13, -40, -32, 8, -7, 22, 34, 15, 16, -25, -46, -33; /M: SY='V'; M= -19, -35, -51, -44, 28, -50, -44, 13, -42, 38, -5, -46, -47, -42, -42, -37, -23, 58, 17, -17; /M: SY='Y'; M= -39, -44, -39, -38, 65, -45, 52, -23, -32, -10, -17, -34, -48, -31, -6, -34, -33, -28, -5, 86; /M: SY='A'; M= 80, -27, -34, -26, -42, -15, -36, -31, -29, -33, -27, -29, -33, -25, -33, -7, -18, -18, -42, -38; /M: SY='I'; M= -27, -39, -51, -47, -15, -54, -48, 66, -44, 27, -2, -45, -43, -41, -46, -38, -23, 46, -43, -24; /M: SY='D'; M= -19, -40, 62, -13, -48, 38, -24, -48, -24, -48, -42, 3, -33, 10, -30, 44, -18, -43, -52, -36; /M: SY='N'; M= -6, -34, 8, -22, -43, -17, 13, -42, -15, -48, -35, 99, -39, -17, -23, -11, -14, -43, -61, -37; /M: SY='W'; M= -31, -44, -41, -35, 9, -46, 31, 38, -9, -14, 16, -34, -41, -28, 23, -32, -3, 20, 73, 29; /M: SY='D'; M= -34,-1500, 102, 3, -54, -31, -19, -53, -21, -51, -50, -1, -33, -21, -30, -22, -24, -49, -70, -37; /M: SY='P'; M= -33, -58, -33, -22, -52, -34, -36, -40, -29, -51, -37, -40, 114, -33, -42, -30, -25, -45, -46, -50; /M: SY='F'; M= -36, 0, -45, -40, 79, -47, -28, 28, -6, -2, -15, -14, -46, -39, 4, -36, -30, -2, -21, 1; /M: SY='S'; M= 16, 15, -28, -29, 5, 31, -31, -38, -28, -38, -33, -16, -33, -24, -33, 59, 20, -30, -43, -30; /M: SY='G'; M= -23, -44, -3, -11, -48, 55, 3, -50, 12, -46, -35, 31, -35, 40, 27, -17, -28, -46, -44, -35; /M: SY='A'; M= 73, -28, -33, -27, -40, -17, -35, -27, -29, -32, -27, -27, -33, -25, -33, 20, -16, 1, -43, -36; /M: SY='N'; M= 39, -32, -16, -24, -16, -17, -20, -37, -21, -40, -32, 68, -36, -7, -27, 32, -13, -31, -46, -7; /M: SY='V'; M= -19, -33, -49, -44, -20, -51, -52, 25, -41, -5, -8, -45, -45, -44, -43, -33, -17, 81, -54, -28; /M: SY='M'; M= -32, -37, -48, -43, -11, -49, -32, 34, -40, 57, 64, -14, -45, -34, -39, -40, -27, -3, -39, -20; /M: SY='S'; M= 30, -31, -25, -26, -38, 16, -27, -39, -26, -41, -34, -15, -31, -19, -30, 71, -8, -30, -43, -7; /M: SY='R'; M= -33, -50, -30, -18, -42, -43, -18, -49, 10, -41, -30, -23, -42, -6, 98, -27, -32, -43, -42, -29; /M: SY='G'; M= -15, -43, -31, -42, -49, 90, -37, -57, -36, -52, -42, -16, -34, -34, -43, -16, -35, -50, -40, -44; /M: SY='I'; M= -32, -40, -52, -47, -11, -54, -42, 65, -44, 49, 19, -45, -44, -39, -45, -42, -27, 6, -39, -21; /M: SY='V'; M= -22, -35, -44, -41, -20, -49, -47, 47, -38, 5, -8, -36, -40, -40, -42, -27, 33, 58, -49, -27; /M: SY='G'; M= 7, 19, -32, -41, -48, 84, -38, -54, -36, -50, -40, -18, -35, -33, -43, -15, -33, -46, -41, -44; /M: SY='D'; M= -24, -6, 66, 28, -45, -27, 4, -43, -19, -29, -38, 29, -32, -16, -27, 34, 2, -39, -58, -34; /M: SY='H'; M= -20, 12, -37, -31, -24, -45, 58, 26, -18, 24, -11, -29, -42, -23, 48, -31, -15, 6, -46, -21; /M: SY='G'; M= 5, -42, 22, -19, -49, 57, -26, -48, 8, -46, -36, 19, -34, 46, -23, -15, -27, -44, -44, -37; /M: SY='G'; M= -20, -44, 38, 17, -50, 73, -29, -55, -27, -51, -42, 9, -33, -25, -36, -17, -30, -49, -46, -42; /M: SY='E'; M= -16, 20, -3, 62, -41, -42, 3, -14, 7, -33, -30, -24, -31, 4, 36, -24, -13, 4, -47, -34; /M: SY='P'; M= -4, -40, -11, -30, -25, -40, -35, 11, -33, 35, 8, -36, 62, -32, -20, -28, 15, -6, -43, -30; /M: SY='W'; M= -24, 26, -48, -41, 9, -46, -46, 8, -22, -12, 18, -40, -43, -39, -39, -31, 11, 59, 85, -2; /M: SY='V'; M= -20, -33, -50, -44, -19, -51, -51, 31, -42, 3, -7, -45, -45, -43, -43, -34, -18, 78, -52, -27; /M: SY='A'; M= 71, -31, -34, -24, -40, -20, -34, 5, -27, -29, -24, -28, -33, 29, -30, -10, -20, -16, -41, -35; /M: SY='S'; M= 4,-1500, -22, -23, -41, -15, -26, -40, -23, -43, -36, -11, -30, -15, -28, 85, -2, -32, -48, -33; /M: SY='P'; M= -33, -58, -33, -22, -52, -34, -36, -40, -29, -51, -37, -40, 114, -33, -42, -30, -25, -45, -46, -50; /M: SY='L'; M= -31, -37, -50, -43, -10, -51, -36, 36, -42, 60, 41, -45, -46, -36, -41, -40, -11, 5, -39, -20; /M: SY='Y'; M= -34, -45, -32, -27, -2, -42, 31, -24, 33, 12, -15, -29, -42, 1, -16, -30, -30, -28, -11, 86; /M: SY='K'; M= -29, -43, -21, -7, -45, -36, -24, -45, 90, -44, -32, -14, -29, -6, 10, -23, -23, -41, -38, -32; /M: SY='Q'; M= -27, -50, -19, 5, -52, -34, 55, -43, -8, -37, -24, -1, -33, 101, -8, -16, -29, -45, -42, -23; /M: SY='H'; M= 30, -41, -26, -21, -37, -32, 101, -43, -15, -35, -24, -17, -37, -15, 42, -20, -29, -27, -54, -16; /M: SY='F'; M= -41, -39, -51, -48, 99, -48, -28, -16, -43, -8, -17, -42, -52, -50, -40, -39, -33, -21, -4, 51; /M: SY='D'; M= 20, 26, 53, -14, -45, -24, -22, -43, -16, -43, -37, 37, -36, -4, 24, 27, -18, -37, -54, -36; /M: SY='L'; M= -34, -35, -51, -43, 7, -52, -35, 1, -44, 74, 5, -50, -51, -37, -41, -44, -30, -6, -36, -18; /M: SY='R'; M= -8, -40, 18, 15, -37, -35, 3, -33, 21, -16, -28, 11, -34, -3, 47, 1, 13, -7, -46, -12; /M: SY='D'; M= -20, -35, 63, -13, -42, -28, -26, -37, -23, -40, -36, -8, -29, -22, -30, 38, 58, -30, -58, -34; /M: SY='G'; M= -15, -43, -31, -42, -49, 90, -37, -57, -36, -52, -42, -16, -34, -34, -43, -16, -35, -50, -40, -44; /M: SY='R'; M= 3, -41, -23, 24, -9, -16, 0, -19, 11, -15, -25, -22, -34, 35, 37, 11, -3, -2, -42, -27; /M: SY='C'; M= -27, 141, -47, -47, -38, -43, -47, -45, -43, -35, -35, -34, -58, -51, -50, -30, -28, -32, -68, -48; /M: SY='L'; M= -31, -36, -51, -43, 4, -51, -35, 20, -43, 63, 47, -47, -47, -36, -40, -42, -28, 11, -38, -18; /M: SY='E'; M= -29, -47, 69, 72, -52, -37, -19, -51, -13, -46, -43, -13, -26, 3, -22, -22, -25, -46, -55, -38; /M: SY='D'; M= 8, -43, 90, -3, -46, -28, -21, -45, -23, -33, -42, 4, -34, -22, -30, -11, -6, -40, -59, -12; /M: SY='P'; M= 18, -47, 9, 50, -50, -5, -29, -43, -21, -45, -37, -28, 76, -18, -31, -22, -25, -39, -46, -43; /M: SY='S'; M= 32, -36, 18, 36, -44, -3, 7, -42, -18, -41, -34, -17, -30, -2, 4, 40, -6, -33, -47, -34; /M: SY='H'; M= -17, -38, -37, -31, 10, -43, 54, 5, -20, -5, 3, -19, -42, 17, -3, -28, -12, 50, -40, 21; /M: SY='S'; M= -3, 6, -24, -20, -41, -25, 5, -27, 13, -40, -32, 5, -34, 12, 43, 57, -6, -33, -47, -31; /M: SY='V'; M= -24, -34, -50, -44, -14, -52, -45, 25, -43, 43, -2, -47, -47, -41, -43, -37, -22, 61, -46, -24; /M: SY='P'; M= 0, -44, -25, 1, -45, -32, -28, -41, 40, -44, -33, -7, 67, -16, 27, 7, 6, -37, -44, -37; /M: SY='T'; M= 24, 15, -35, -32, -30, -35, 6, -8, -30, -20, -19, -26, -35, -32, -17, -6, 50, 47, -52, -30; /M: SY='Y'; M= -39, -51, -41, -40, 26, -43, 28, -26, -33, -22, -20, -40, -48, -29, -31, -35, -36, -33, 98, 100; /M: SY='P'; M= 9, -47, 37, 35, -49, -33, -26, -44, 0, -45, -36, -22, 67, -2, 24, -23, -25, -40, -48, -39; /M: SY='V'; M= 12, -32, -42, -38, -24, -42, -46, 20, -36, -11, -13, -36, -40, -38, -40, -11, 23, 68, -52, -29; /M: SY='R'; M= -31, -47, -28, -7, -39, -42, -20, -40, 21, -14, 5, -23, -39, 27, 84, -26, -14, -37, -42, -28; /M: SY='V'; M= -15, -36, -45, -24, -18, -50, 3, 41, -37, 13, -7, -41, -43, -37, -18, -33, -21, 62, -46, -9; /M: SY='E'; M= -7, -39, 24, 40, -38, -33, -25, -20, 9, -27, -31, 7, -30, -14, 18, 13, 27, -11, 8, -19; /I: I=-36; MI=0; MD=-108; IM=0; DM=-108; /M: SY='D'; M= 16, -40, 61, 7, -49, 35, -23, -47, -22, -47, -40, 39, -14, -21, -16, -16, -23, -42, -53, -39; /M: SY='G'; M= -13, -44, 52, 5, -50, 66, -28, -53, -26, -50, -42, 14, -33, -2, -34, -17, -29, -48, -48, -41; /M: SY='W'; M= 0, -41, 10, 14, -22, 6, 26, -16, 9, -30, -8, -10, -35, 10, 20, -8, -12, 13, 32, 0; /M: SY='V'; M= -21, -35, -49, -43, -4, -50, -48, 30, -39, -6, -9, -44, -18, -42, -26, -33, -19, 75, -48, -7; /M: SY='W'; M= -19, 3, -29, 27, -26, -39, 0, -17, -20, -2, 1, -31, -37, 56, -7, -17, -30, -2, 100, 1; /M: SY='V'; M= -26, -38, -43, -8, -16, -51, -40, 42, -38, 32, -5, -42, -43, -3, -39, -35, -23, 50, -42, -2; /M: SY='A'; M= 37, -36, -28, 0, -36, 5, -6, -5, 2, -3, -23, 0, -35, 15, 17, 8, -22, -8, -43, -32; /M: SY='A'; M= 40, -33, -32, -14, -31, 9, 3, -9, -30, 6, -19, -11, -36, -3, -34, 14, -7, 25, -45, -31; /I: E1=0; IE=-355; DE=-355;» more |
Post-processing [info]
| COMPETES_HIT_WITH | PS51296 |
Numerical results [info]
| Total number of hits | 5 in 5 different sequences |
| Number of true positive hits | 5 in 5 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Taxonomic range [info] | Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Matrix type [info] | protein_domain |
| Scaling database [info] | reversed |
| Author [info] | N_Hulo |
| Version [info] | 3 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
5 sequences
NIRB_KLEOX (Q06458), NIRD_ECO57 (P0A9I9), NIRD_ECOLI (P0A9I8), NIRD_SALTI (P0A230), NIRD_SALTY (P0A229)» more
|
| PDB [Detailed view] |
1 PDB
2JO6 |