PROSITE entry PS51389
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General information about the entry
| Entry name [info] | XIN |
| Accession [info] | PS51389 |
| Entry type [info] | MATRIX |
| Date [info] |
01-JUN-2008 CREATED;
01-OCT-2013 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC51389 |
| Associated ProRule [info] | PRU00721 |
Name and characterization of the entry
| Description [info] | Xin repeat profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=16; /DISJOINT: DEFINITION=PROTECT; N1=2; N2=15; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.2644210; R2=0.0075506; TEXT='NScore'; /CUT_OFF: LEVEL=0; SCORE=826; N_SCORE=8.5; MODE=1; TEXT='R'; /CUT_OFF: LEVEL=-1; SCORE=614; N_SCORE=6.9; MODE=1; TEXT='RR'; /DEFAULT: M0=-45; D=-50; I=-50; B1=-500; E1=-500; MI=-105; MD=-105; IM=-105; DM=-105; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; BI=-105; BD=-105; /M: SY='G'; M= 31, 13, -95, -99,-108, 88,-101,-104, -3,-106, -98, -83, -98, -94, -99, -30, -19, -5,-106,-104; /M: SY='D'; M= -41, 8, 93, 24,-113, 8, -83,-112, -83,-112,-106, 64, -97, 11, -91, -25, -85,-109,-122,-101; /M: SY='V'; M= -84, -97,-111,-105, -22,-113,-112, 16,-102, -35, -73,-105,-107,-105, -30, -94, 6, 99,-114, -90; /M: SY='Q'; M= -89,-108, -5, -26,-111, -96, 31,-107, 58,-104, -93, -7, -96, 96, 19, 23, -16,-105,-107, -92; /M: SY='T'; M= -28,-101, -26, -82,-103, -27, -5, -98, 44, -49, -8, 28, -17, 35, 35, 32, 47, -30,-110, -95; /M: SY='T'; M= 23, 38, -24, -86, -19, -3, -90, -94, 18, -96, -11, 38, -98, 41, -87, 16, 46, -7,-106, 5; /M: SY='R'; M= -90, 25, -92, -83, -99,-102, -90, -37, 65, -12, -89, -84, -98, -78, 70, 0, 49, -24,-108, -94; /M: SY='W'; M= -95,-113, -91, 21, 13,-102, 80,-102, 25, -38, -90, -89,-100, 58, -13, -8, -96,-105, 118, 20; /M: SY='L'; M= -93, -2,-110,-102, -1,-113, -98, 27, 13, 61, 55,-104,-108, -96, -12,-101, -90, 32,-101, -8; /M: SY='F'; M=-105,-101,-118,-113, 126,-113, -98, -78,-109, -26, -80,-107,-116,-119,-106,-104, -97, -83, -71, -50; /M: SY='E'; M= -89,-111, -66, 107,-114, 8, -84,-114, -73,-107,-101, -85, -88, 52, -81, -85, -91,-107,-108,-102; /M: SY='T'; M= 26, -95, -84, -18,-102, -89, 2, -96, -86,-100, -94, 44, 14, -86, -93, 46, 84, -89,-115, -97; /M: SY='Q'; M= -90, 32, 22, 49, -39, -29, -86, -33, -3, -4, -89, -21, -96, 83, -51, -29, 24, -96,-106, -21; /M: SY='P'; M= -29,-105, -9, 5,-109, -42, -89,-103, -85,-108, -98, 43, 83, 29, -93, 51, 28,-101,-113,-102; /M: SY='L'; M= 21, 18, -14,-100, 33, -46, 24, -2,-101, 61, 25, -99,-107, -97,-101, -1, -89, -16,-101, -81; /M: SY='D'; M= -48, 51, 74, 25,-103, 8, -87, -40, -87,-106,-101, 27, -20, -84, -94, 44, -14,-101,-113, 11; /I: E1=0; IE=-105; DE=-105;» more |
Numerical results [info]
| Total number of hits | 171 in 7 different sequences |
| Number of true positive hits | 171 in 7 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 28 |
| Matrix type [info] | protein_domain |
| Scaling database [info] | reversed |
| Author [info] | CJA_Sigrist |
| Feature key [info] | REPEAT |
| Feature description [info] | Xin |
| Version [info] | 3 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
7 sequences
XIRP1_CHICK (Q91957), XIRP1_DANRE (Q5PZ43), XIRP1_HUMAN (Q702N8), XIRP1_MOUSE (O70373), XIRP2_HUMAN (A4UGR9), XIRP2_MOUSE (Q4U4S6), XIRP2_RAT (Q71LX6)» more
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