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Entry: PS51667

General information about the entry

Entry name [info] WRC
Accession [info] PS51667
Entry type [info] MATRIX
Date [info] 01-MAR-2013 CREATED;
10-MAY-2017 DATA UPDATE;
16-JAN-2019 INFO UPDATE.
PROSITE Doc. [info] PDOC51667
Associated ProRule [info] PRU01002

Name and characterization of the entry

Description [info] WRC domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=45;
/DISJOINT: DEFINITION=PROTECT; N1=5; N2=41;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.1995378; R2=0.0076727; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=5913.7382812; R2=1.0950987; PRIORITY=1; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=1082; H_SCORE=7099; N_SCORE=10.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=561; H_SCORE=6528; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-26; D=-150; I=-150; B1=-1000; E1=-1000; MI=-380; MD=-380; IM=-380; DM=-380;
...
                A    C    D    E    F    G    H    I    K    L    M    N    P    Q    R    S    T    V    W    Y
/I:         B1=0; BI=-380; BD=-380;
/M: SY='D';  M=  13, -75,  55,  41, -71, -21, -62,  -8,  -5,   4, -59, -39,  19,  17, -60, -48, -17,   3, -82, -67;
/M: SY='P';  M=  19, -76, -24,  21,  -4, -17, -19, -61, -18, -26,  24,  11,  79,  15, -63, -17, -29, -33, -76, -66;
/M: SY='E';  M= -26, -77,  47,  67, -76,  17, -20, -41, -26, -34,  -2, -22, -27, -10,   2,   4, -27, -23, -82, -59;
/M: SY='P';  M= -36, -77,  26,  24, -17,  30,  27, -23, -60, -31, -24, -49,  57, -23, -29,  -6,  -4,  13, -79, -40;
/M: SY='W';  M= -32, -75, -69, -51,   8,  32, -48, -36, -11,  21, -21,  10, -36, -18,  -1,   8,   4, -23,  99, -19;
/M: SY='R';  M= -65, -30, -39, -37, -28, -75, -53, -72,  14, -44,  31, -27,  -7,  27,  96, -60, -27, -70, -72,   4;
/M: SY='C';  M= -31, 151, -80, -80, -69, -76, -79, -76, -76, -44, -67, -67, -91, -83, -82, -63, -61, -65, -97, -34;
/M: SY='R';  M= -23, -13, -54, -51, -75, -47,   7, -75,  51, -58, -65,  47, -68,  -6,  61,  40,  -5, -55, -80, -65;
/M: SY='R';  M= -65, -19, -62, -51, -22, -29, -19, -76,  49, -45, -62, -22, -73, -43,  98, -60, -63, -35, -74, -61;
/M: SY='N';  M= -36, -67, -29, -57, -67, -60, -22, -46,  11, -69, -35,  73, -67, -53,  -8,  36,  60, -11,  23,  -4;
/M: SY='D';  M= -31, -78, 104, -17, -79,  -6, -52, -82, -55, -82, -78,  45, -68, -54, -63, -31, -56, -80, -91,   5;
/M: SY='G';  M= -50, -19, -26, -72, -36,  96, -68, -86, -40, -83, -73, -50, -68, -65, -73,   9, -64, -81, -72, -13;
/I:         I=-29; MD=-75;
/M: SY='K';  M= -37, -81, -61, -27, -81, -37, -24, -82,  86, -55, -69, -27, -70, -46,  48,   1, -61, -77, -79, -69; D=-29;
/I:         I=-29; MI=0; MD=-75; IM=0; DM=-75;
/M: SY='K';  M= -42, -77, -59, -37, -79,  56, -60, -79,  63, -59, -66, -19, -67,  42,  37, -41, -11, -57, -74, -68;
/M: SY='W';  M= -75,-101,-102, -79, -41, -74,-102, -74, -70, -71, -74, -95, -79, -71, -34, -82, -88, -88, 178, -27;
/M: SY='R';  M= -66, -82, -61, -51, -36, -74,  82, -67, -20, -46, -60, -38, -18,  23,  95, -35, -50, -63, -78, -26;
/M: SY='C';  M= -61, 153, -81, -81, -69, -77, -80, -78, -77, -69, -69, -67, -92, -84, -83, -64, -61, -66, -98, -25;
/M: SY='S';  M= -37, -10, -58, -51, -54, -55,   7, -74,  50, -74, -18, -11,  37,  21,  21,  60,   5, -70,   6, -64;
/M: SY='R';  M= -15, -76, -16,   8, -45, -21,  -8, -74,  29, -30,  -1,  41, -69,  40,  67, -11, -30, -71, -78, -63;
/M: SY='M';  M= -16, -77,  25,  25, -25, -28, -58,   6,  -2, -26,  39,   2,  25,  22,  39, -41,   7, -60,  -8, -40;
/M: SY='A';  M=  55, -65, -67, -63, -66, -49, -70, -40, -15, -30, -54, -10, -69, -25, -11,   1,  33,  54, -81, -66;
/M: SY='M';  M= -24, -25,  18, -13,  -6, -52, -20,   0,  14,  26,  52, -29, -45,  -1, -14,  12, -56,  23, -76, -29;
/M: SY='P';  M= -10, -24, -25,  36, -77,  12,  12, -49, -23, -57, -64, -24,  77,  22, -15, -21, -40,  14, -80, -71;
/I:         I=-45; MI=0; MD=-115; IM=0; DM=-115;
/M: SY='G';  M=  -5, -49,  38, -47, -63,  75, -36, -81, -64, -66, -72,  11,  54, -63, -72, -51, -21, -78, -79, -68;
/M: SY='H';  M= -41, -76, -10, -18,  -8, -48,  59, -68,  43, -38, -59,  43, -70,  49, -32,  -9, -18, -31, -65,  58;
/M: SY='S';  M=   7, -68, -59, -54, -71, -38, -62, -48,  52, -16, -61, -23,  -9, -20, -23,  63,  36, -33, -79, -66;
/M: SY='Y';  M= -42, -73, -78, -73,  40, -80,  11, -41, -70,  56,  37, -74, -81, -21, -45, -37, -63,  -4,  10,  72;
/M: SY='C';  M= -44, 151, -80, -80, -70, -55, -79, -77, -75, -68, -15, -67, -90, -82, -56, -64, -61, -65, -23, -38;
/M: SY='E';  M= -13, -28,  44,  88, -80, -36, -56, -77,  -2, -41, -69, -40, -44,   0, -16, -30, -37, -37, -82, -71;
/M: SY='H';  M= -19,  -3, -19, -55, -53, -64,  88, -29,  34, -58, -39, -54, -47,   1,  46, -50, -28, -69, -63,  73;
/M: SY='H';  M= -39, -80, -53, -54, -68, -70, 146, -84, -58, -61, -54, -18, -31, -48, -48, -41, -66, -84,-101, -35;
/M: SY='M';  M=  -9, -26, -73, -67,  27, -75,  36,  13, -46,  42,  62, -43, -47,  15, -29,  -6, -39, -38, -65,  34;
/M: SY='H';  M=  20, -73,  44, -26, -21,  -1,  71, -29, -18,  -1, -19,  -4, -12, -37,   0,   4, -38,  -8, -82, -58;
/M: SY='Q';  M= -35,  14, -64, -51, -63, -45, -19, -67,  48,  -7,  22, -57, -71,  59,  55, -15, -61, -49,  48,  28;
/M: SY='G';  M=  15, -71, -62, -45, -49,  50, -64,  -7,  25, -28, -62,  -9, -29,   9, -53,  41, -19, -12, -75, -31;
/M: SY='R';  M= -19, -54, -60,  -7,  -9, -56,  17, -49,  33, -11, -45,  14, -72, -15,  78,  -8, -28, -30, -75, -22;
/I:         I=-33; MI=0; MD=-84; IM=0; DM=-84;
/M: SY='H';  M=  -8, -72, -58, -54, -71, -30,  55, -50,  38, -25,  13,  21,  -8, -14,  40,  50, -36, -45, -80, -48;
/M: SY='R';  M= -25,  -7, -11, -36, -67, -39, -12, -76,  49, -73, -64,  -1,  19, -26,  74,  -8, -25, -60, -70,  36;
/M: SY='S';  M=   8, -69, -46, -56, -40, -30, -43, -66,  11,  -9, -15,  15,  -3,  14,  -1,  68,  12, -63, -75,   3;
/I:         I=-42; MI=0; MD=-106; IM=0; DM=-106;
/M: SY='N';  M=  27, -70, -28, -48, -62,  -5, -19, -55,  11, -53,  19,  45,  15, -39,  35,  27,  -6,  -6, -79, -38;
/M: SY='K';  M= -32, -75, -40, -24, -74, -58, -59, -49,  57, -45, -64,  14,  54,  -8,  26,  36,   6, -25, -78, -38;
/M: SY='K';  M=  -1, -14, -34, -40, -68, -24,   6, -63,  40,  -7, -24,  18,  33, -29,  15,  36, -10,  -9, -76,  -3;
/M: SY='P';  M=  19, -72, -27,  -7,  -3, -25, -35, -44,  25, -29, -44,   6,  51, -21, -33,   7, -33,  38, -76, -26;
/M: SY='E';  M=   9, -74,  20,  48, -58, -50,   3, -48,  32, -40, -38, -27,   3,  16,  13,  -6,   7,  -2, -79, -44;
/M: SY='S';  M=  12, -71, -24,  -5,  -5,  16, -32, -58, -18, -42, -49,  11,  30, -16,  11,  49,   8,  -8, -78, -65;
/I:         E1=0; IE=-380; DE=-380;
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2019_01 which contains 559'077 sequence entries.


Total number of hits 25 in 24 different sequences
Number of true positive hits 25 in 24 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 2
Feature key [info] DOMAIN
Feature description [info] WRC
Version [info] 4

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
24 sequences

GRF10_MAIZE (A5HEG9    ), GRF10_ORYSJ (Q6EPP9    ), GRF11_ORYSJ (Q6AWX8    ), 
GRF12_ORYSJ (Q6AWX7    ), GRF1_ARATH  (O81001    ), GRF1_MAIZE  (A0A060D764), 
GRF1_ORYSI  (A2XA73    ), GRF1_ORYSJ  (Q6AWY8    ), GRF2_ARATH  (Q8L8A8    ), 
GRF2_ORYSJ  (Q6AWY7    ), GRF3_ARATH  (Q9SJR5    ), GRF3_ORYSJ  (Q6AWY6    ), 
GRF4_ARATH  (Q8L8A7    ), GRF4_ORYSJ  (Q6ZIK5    ), GRF5_ARATH  (Q8L8A6    ), 
GRF5_ORYSJ  (Q6AWY4    ), GRF6_ARATH  (Q9ZQ12    ), GRF6_ORYSJ  (Q6AWY3    ), 
GRF7_ARATH  (Q9FJB8    ), GRF7_ORYSJ  (Q6AWY2    ), GRF8_ARATH  (Q9SU44    ), 
GRF8_ORYSJ  (Q6AWY1    ), GRF9_ARATH  (Q8S9M3    ), GRF9_ORYSJ  (Q9FRG8    )
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