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Entry: PS51800

General information about the entry

Entry name [info] ZF_CHHC_U11_48K
Accession [info] PS51800
Entry type [info] MATRIX
Date [info] 01-MAY-2016 CREATED;
01-MAY-2016 DATA UPDATE;
12-AUG-2020 INFO UPDATE.
PROSITE Doc. [info] PDOC51800
Associated ProRule [info] PRU01141

Name and characterization of the entry

Description [info] Zinc finger CHHC U11-48K-type profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=28;
/DISJOINT: DEFINITION=PROTECT; N1=3; N2=26;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.8021111; R2=0.0078830; TEXT='-LogE';
/CUT_OFF: LEVEL=0; SCORE=1104; N_SCORE=11.5; MODE=1; TEXT='R';
/CUT_OFF: LEVEL=-1; SCORE=470; N_SCORE=6.5; MODE=1; TEXT='R?';
/DEFAULT: M0=-52; D=-100; I=-100; B1=-1000; E1=-1000; MI=-255; MD=-255; IM=-255; DM=-255;
...
                A    C    D    E    F    G    H    I    K    L    M    N    P    Q    R    S    T    V    W    Y
/I:         B1=0; BI=-255; BD=-255;
/M: SY='M';  M=-142, -51, -66, -68,  19,-155, -67, -21,  32,  47,  66, -53, -78, -46,  38, -73, -41, -14,  18,  31;
/M: SY='V';  M=   0,-148, -64,   6, -15,-103,-149,  46,  -1,  -8,   5,-145,-150,   8, -40, -53, -19,  68,-155,-137;
/M: SY='Q';  M= -40,-152,-142, -19, -63,-105,  -2,  32,  -1, -40,   6, -79,  44,  51,  14,  -5,  43,  23,-155, -72;
/M: SY='C';  M=-139, 161,-159,-159,-149,-154,-159,-156,-154,-146,-147,-145,-169,-162,-161,-141,-139,-143,-179,-160;
/M: SY='P';  M=-143,-168, -57,-133,-161,-146,-147, -63, -48, -79,-146,-149, 131,-143, -54,-141, -57, -92,-157,-159;
/M: SY='Y';  M= -93, -55,-154,-154,  86,-157,  -2, -26,-149,   6,-124, -40,-161,-148,-146,-147,-142, -27,-117, 108;
/M: SY='N';  M=-140,-150,  84, -31,-158,-133, -49,-155,-128,-160,-151, 109,-147, -67,-136,  -8,-128, -60,-175,-148;
/M: SY='P';  M=  38, -60, -45, -21, -63, -52, -20, -90,  26, -89,-143,  16,  77, -16,   6,  30, -30, -99,-155, -41;
/M: SY='S';  M=   9,   5, -46,  -9, -35, -34,  29, -56,   5, -43, -41,  35,-145, -35,  24,  48,  45, -27,-158, -79;
/M: SY='H';  M=-147,-159,-130, -16,-145,-149, 156,-163,-135,-146,-132,-121,-147,-124,-130,-136,-145,-162,-178, -45;
/M: SY='R';  M=-104, -69, -63, -54, -49,-152,  22,  19,  19,   4,  15,-138,-149,  -3,  50,  -2,  32,  27,  18,  20;
/M: SY='I';  M=-137, -34, -84,-156, -15,-162,-154,  72,-153,   4,  62,-154, -81,-151,-154,-148, -84,  72,-153, -27;
/M: SY='P';  M= -33, -16,   6, -22, -11, -82,  -8, -41,  19,   0, -37, -12,  75, -45,  23,   3,   3, -61,  11,   2;
/M: SY='K';  M=  23,-153,-135,  35, -76, -42, -37, -36,  46, -41,-139, -50,  42,  12,  36,  10, -66, -18,  -8, -45;
/M: SY='S';  M=   4, -71,  18,  38, -45, -19,  13, -50,  29, -49,-141,  -4, -23,   3,  17,  42, -16, -34, -43, -29;
/M: SY='R';  M= -55, -30,  44,  50, -85, -76,   5,-155,  24, -64, -64,   7,-144,   4,  65,  20, -16,-104,-159,-143;
/M: SY='M';  M= -96,-149,-160, -87,  52,-160,-141,   6, -93,  64,  91,-155,-157,-146, -84,-151,-140, -30,  -1,  28;
/M: SY='Q';  M=  12,-152,  17,  33,  -6, -51,  -6, -44,   8, -67,  -7,  18,   8,  58,  -1,  -5,  -5, -18, -19, -36;
/M: SY='H';  M= -16,  -6,  -3,  23, -21, -73,  46, -18,  39, -18, -69,   5, -92,  36,  23, -38, -11, -43,  25,  31;
/M: SY='H';  M=-147,-159,-131,-131,-145,-149, 158,-164,-136,-146,-131,-120,-147,-125,-130,-136,-145,-163,-181,-114;
/M: SY='L';  M=-140,-149,-155, -23, -59,-160, -25,  53, -34,  60,  59,-151,-154, -88, -59, -50, -39,  33,-152, -61;
/M: SY='M';  M=   9, -60, -44,  29, -54, -94,-139,   6,  29,  -8,  30, -19,-146,  16,   8,  19,   5,  12,   7, -27;
/M: SY='K';  M= -99, -21, -84, -19,-148,-105,  -5,  -1,  71, -66,-137,  28,-145,   2,  40,   9,  28,   3,-156, -74;
/M: SY='C';  M=-139, 160,-158,-158,-149,-154,-157,-156,-152,-147,-147,-144,-169,-160, -41, -78,-139,-144,-178,-159;
/M: SY='P';  M=  -2,   4, -37,  -2, -58, -99, -33, -99,  17, -49, -22,  33,  78,   0,  45,  -8, -22, -37, -36,-146;
/M: SY='D';  M= -13,-152,  60,  -4, -40, -82, -38, -99,  49,  -8,   0,  17, -76, -47,   9,  22, -24, -59,  51, -27;
/M: SY='R';  M= -13,-152, -36, -46, -57, -62,-133, -35,  51, -28,-139,  49, -77,   7,  74,   4, -21, -59,-155, -71;
/M: SY='H';  M=  -6, -58, -66, -35,  -9, -49,  55,  17,  29, -21, -63, -14,  43,   8,  20,   8, -27, -64, -38,  33;
/I:         E1=0; IE=-255; DE=-255;
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2020_04 which contains 563'082 sequence entries.


Total number of hits 33 in 24 different sequences
Number of true positive hits 33 in 24 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 2
Feature key [info] ZN_FING
Feature description [info] CHHC U11-48K-type
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
24 sequences

ASTRX_DROME (Q8SWX0    ), D7_XENLA    (P13007    ), GTSF1_BOVIN (Q3SZU0    ), 
GTSF1_HUMAN (Q8WW33    ), GTSF1_MACFA (Q4R8M9    ), GTSF1_MOUSE (Q9DAN6    ), 
GTSFL_BOVIN (Q3T026    ), GTSFL_HUMAN (Q9H1H1    ), GTSFL_MOUSE (Q9CWD0    ), 
SNR48_HUMAN (Q6IEG0    ), SNR48_MOUSE (Q9D361    ), TRM13_ASHGO (Q75AT3    ), 
TRM13_DEBHA (Q6BP10    ), TRM13_DICDI (Q54BD5    ), TRM13_HUMAN (Q9NUP7    ), 
TRM13_KLULA (Q6CP50    ), TRM13_MOUSE (Q8BYH3    ), TRM13_ORYSJ (Q10B19    ), 
TRM13_PICST (A3LXS6    ), TRM13_SCHPO (Q9UTH1    ), TRM13_VANPO (A7TSF4    ), 
TRM13_YARLI (Q6C4F8    ), TRM13_YEAST (Q12383    ), U1148_ARATH (Q9M8X2    )
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PDB
[Detailed view]
2 PDB

2VY4; 2VY5

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