PROSITE entry PS51800
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General information about the entry
| Entry name [info] | ZF_CHHC_U11_48K |
| Accession [info] | PS51800 |
| Entry type [info] | MATRIX |
| Date [info] |
01-MAY-2016 CREATED;
01-MAY-2016 DATA UPDATE; 13-SEP-2023 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC51800 |
| Associated ProRule [info] | PRU01141 |
Name and characterization of the entry
| Description [info] | Zinc finger CHHC U11-48K-type profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=28; /DISJOINT: DEFINITION=PROTECT; N1=3; N2=26; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.8021111; R2=0.0078830; TEXT='-LogE'; /CUT_OFF: LEVEL=0; SCORE=1104; N_SCORE=11.5; MODE=1; TEXT='R'; /CUT_OFF: LEVEL=-1; SCORE=470; N_SCORE=6.5; MODE=1; TEXT='R?'; /DEFAULT: M0=-52; D=-100; I=-100; B1=-1000; E1=-1000; MI=-255; MD=-255; IM=-255; DM=-255; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; BI=-255; BD=-255; /M: SY='M'; M=-142, -51, -66, -68, 19,-155, -67, -21, 32, 47, 66, -53, -78, -46, 38, -73, -41, -14, 18, 31; /M: SY='V'; M= 0,-148, -64, 6, -15,-103,-149, 46, -1, -8, 5,-145,-150, 8, -40, -53, -19, 68,-155,-137; /M: SY='Q'; M= -40,-152,-142, -19, -63,-105, -2, 32, -1, -40, 6, -79, 44, 51, 14, -5, 43, 23,-155, -72; /M: SY='C'; M=-139, 161,-159,-159,-149,-154,-159,-156,-154,-146,-147,-145,-169,-162,-161,-141,-139,-143,-179,-160; /M: SY='P'; M=-143,-168, -57,-133,-161,-146,-147, -63, -48, -79,-146,-149, 131,-143, -54,-141, -57, -92,-157,-159; /M: SY='Y'; M= -93, -55,-154,-154, 86,-157, -2, -26,-149, 6,-124, -40,-161,-148,-146,-147,-142, -27,-117, 108; /M: SY='N'; M=-140,-150, 84, -31,-158,-133, -49,-155,-128,-160,-151, 109,-147, -67,-136, -8,-128, -60,-175,-148; /M: SY='P'; M= 38, -60, -45, -21, -63, -52, -20, -90, 26, -89,-143, 16, 77, -16, 6, 30, -30, -99,-155, -41; /M: SY='S'; M= 9, 5, -46, -9, -35, -34, 29, -56, 5, -43, -41, 35,-145, -35, 24, 48, 45, -27,-158, -79; /M: SY='H'; M=-147,-159,-130, -16,-145,-149, 156,-163,-135,-146,-132,-121,-147,-124,-130,-136,-145,-162,-178, -45; /M: SY='R'; M=-104, -69, -63, -54, -49,-152, 22, 19, 19, 4, 15,-138,-149, -3, 50, -2, 32, 27, 18, 20; /M: SY='I'; M=-137, -34, -84,-156, -15,-162,-154, 72,-153, 4, 62,-154, -81,-151,-154,-148, -84, 72,-153, -27; /M: SY='P'; M= -33, -16, 6, -22, -11, -82, -8, -41, 19, 0, -37, -12, 75, -45, 23, 3, 3, -61, 11, 2; /M: SY='K'; M= 23,-153,-135, 35, -76, -42, -37, -36, 46, -41,-139, -50, 42, 12, 36, 10, -66, -18, -8, -45; /M: SY='S'; M= 4, -71, 18, 38, -45, -19, 13, -50, 29, -49,-141, -4, -23, 3, 17, 42, -16, -34, -43, -29; /M: SY='R'; M= -55, -30, 44, 50, -85, -76, 5,-155, 24, -64, -64, 7,-144, 4, 65, 20, -16,-104,-159,-143; /M: SY='M'; M= -96,-149,-160, -87, 52,-160,-141, 6, -93, 64, 91,-155,-157,-146, -84,-151,-140, -30, -1, 28; /M: SY='Q'; M= 12,-152, 17, 33, -6, -51, -6, -44, 8, -67, -7, 18, 8, 58, -1, -5, -5, -18, -19, -36; /M: SY='H'; M= -16, -6, -3, 23, -21, -73, 46, -18, 39, -18, -69, 5, -92, 36, 23, -38, -11, -43, 25, 31; /M: SY='H'; M=-147,-159,-131,-131,-145,-149, 158,-164,-136,-146,-131,-120,-147,-125,-130,-136,-145,-163,-181,-114; /M: SY='L'; M=-140,-149,-155, -23, -59,-160, -25, 53, -34, 60, 59,-151,-154, -88, -59, -50, -39, 33,-152, -61; /M: SY='M'; M= 9, -60, -44, 29, -54, -94,-139, 6, 29, -8, 30, -19,-146, 16, 8, 19, 5, 12, 7, -27; /M: SY='K'; M= -99, -21, -84, -19,-148,-105, -5, -1, 71, -66,-137, 28,-145, 2, 40, 9, 28, 3,-156, -74; /M: SY='C'; M=-139, 160,-158,-158,-149,-154,-157,-156,-152,-147,-147,-144,-169,-160, -41, -78,-139,-144,-178,-159; /M: SY='P'; M= -2, 4, -37, -2, -58, -99, -33, -99, 17, -49, -22, 33, 78, 0, 45, -8, -22, -37, -36,-146; /M: SY='D'; M= -13,-152, 60, -4, -40, -82, -38, -99, 49, -8, 0, 17, -76, -47, 9, 22, -24, -59, 51, -27; /M: SY='R'; M= -13,-152, -36, -46, -57, -62,-133, -35, 51, -28,-139, 49, -77, 7, 74, 4, -21, -59,-155, -71; /M: SY='H'; M= -6, -58, -66, -35, -9, -49, 55, 17, 29, -21, -63, -14, 43, 8, 20, 8, -27, -64, -38, 33; /I: E1=0; IE=-255; DE=-255;» more |
Numerical results [info]
| Total number of hits | 33 in 24 different sequences |
| Number of true positive hits | 33 in 24 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Matrix type [info] | protein_domain |
| Scaling database [info] | reversed |
| Author [info] | CJA_Sigrist |
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 2 |
| Feature key [info] | ZN_FING |
| Feature description [info] | CHHC U11-48K-type |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
24 sequences
ASTRX_DROME (Q8SWX0), D7_XENLA(P13007), GTSF1_BOVIN (Q3SZU0), GTSF1_HUMAN (Q8WW33), GTSF1_MACFA (Q4R8M9), GTSF1_MOUSE (Q9DAN6), GTSFL_BOVIN (Q3T026), GTSFL_HUMAN (Q9H1H1), GTSFL_MOUSE (Q9CWD0), SNR48_HUMAN (Q6IEG0), SNR48_MOUSE (Q9D361), TRM13_ASHGO (Q75AT3), TRM13_DEBHA (Q6BP10), TRM13_DICDI (Q54BD5), TRM13_HUMAN (Q9NUP7), TRM13_KLULA (Q6CP50), TRM13_MOUSE (Q8BYH3), TRM13_ORYSJ (Q10B19), TRM13_PICST (A3LXS6), TRM13_SCHPO (Q9UTH1), TRM13_VANPO (A7TSF4), TRM13_YARLI (Q6C4F8), TRM13_YEAST (Q12383), U1148_ARATH (Q9M8X2)» more
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| PDB [Detailed view] |
3 PDB
2VY4; 2VY5; 6X46 |