PROSITE entry PS51804
View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission
General information about the entry
| Entry name [info] | ZF_C2HC_LYAR |
| Accession [info] | PS51804 |
| Entry type [info] | MATRIX |
| Date [info] |
01-JUN-2016 CREATED;
01-JUN-2016 DATA UPDATE; 08-NOV-2023 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC51804 |
| Associated ProRule [info] | PRU01145 |
Name and characterization of the entry
| Description [info] | Zinc finger C2HC LYAR-type profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=26; /DISJOINT: DEFINITION=PROTECT; N1=1; N2=26; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.9176445; R2=0.0071149; TEXT='-LogE'; /CUT_OFF: LEVEL=0; SCORE=1066; N_SCORE=9.5; MODE=1; TEXT='R'; /CUT_OFF: LEVEL=-1; SCORE=645; N_SCORE=6.5; MODE=1; TEXT='R?'; /DEFAULT: M0=-22; D=-100; I=-100; B1=-1000; E1=-1000; MI=-255; MD=-255; IM=-255; DM=-255; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; BI=-255; BD=-255; /M: SY='M'; M= 18, 54,-24,-39,-19, 8,-38,-27,-52,-31, 98, -2,-13,-28,-50,-10,-30,-30,-53,-29; /M: SY='V'; M= 23,-25,-38,-16,-39,-55,-14,-24,-23,-35,-34,-16, 8, -8,-43, -1, 16, 57, 21, -1; /M: SY='W'; M=-18, 11,-46,-40, 32,-39,-17,-42, 10,-36,-18, -3,-39,-31,-14, 42, 26, 7, 45, 21; /M: SY='F'; M=-59,-55,-40,-67, 97,-63,-42,-23,-58, 18,-25,-63,-72,-68,-62,-34,-37, 3,-36, 32; /M: SY='S'; M=-23,-12,-36,-34,-54,-46,-17,-14,-46,-46,-40, 0,-53, 16,-45, 67, 58, -2,-72,-44; /M: SY='C'; M=-50,146,-69,-69,-59,-59,-37,-43,-65,-41,-56,-56,-56,-71,-63,-40,-40,-53,-88,-69; /M: SY='I'; M=-41,-39, 22, 24,-49,-40,-27, 56,-27,-10, 30, 26,-56,-33,-49,-14,-36, 18,-69,-36; /M: SY='D'; M= -4,-59, 91,-22,-52, 0, -1,-54,-12,-59,-60, 4,-56,-16,-29,-13,-20, -9,-79,-35; /M: SY='C'; M=-49,149,-68,-68,-59,-65,-69,-66,-64,-57,-57,-55,-79,-52,-71,-51,-36,-54,-89,-70; /M: SY='G'; M=-29,-50,-32,-51,-24, 66, -4,-60,-41,-23, 34, 45,-57, 26,-48, 17,-38,-59,-64,-40; /I: I=-28; MI=0; MD=-71; IM=0; DM=-71; /M: SY='D'; M=-14,-63, 56, 44,-55,-53,-38,-53, 39,-44,-46, 14,-52, 18,-15,-30, 5, -1,-71,-52; /M: SY='T'; M=-22, -8, 38,-16,-45,-49, 9,-11,-46,-40, 28, -9,-56,-45,-43, 28, 50, 35,-68,-25; /I: I=-28; MI=0; MD=-71; IM=0; DM=-71; /M: SY='F'; M=-53,-45,-43,-55, 89,-71,-41, 4,-52, 34,-10,-59,-70,-66,-62,-60,-50, 28,-33, -6; /M: SY='K'; M=-35,-59, 15,-14,-52, -1,-17,-33, 59,-44,-46,-26, 14, 6, 2,-11, 32,-42, 46, -7; /M: SY='K'; M=-40,-33,-26,-26,-66, 42,-36,-52, 74,-33,-50,-13,-37, 28, 10,-31,-48,-59,-62,-48; /M: SY='P'; M=-19,-64, 22, 9,-33,-22,-21,-39, 32,-53,-38, 28, 53, 17,-25,-22, 8, 3,-56,-23; /M: SY='K'; M=-10,-61, 26, 22,-64,-38,-31,-63, 54,-60,-55, 6,-51, 38,-24, 31, 21,-54,-26,-54; /M: SY='Y'; M=-30,-60,-65,-55, -2,-68,-26, -3,-59, 26,-30,-62,-50,-57,-58,-50, -9, 55,-32, 82; /M: SY='D'; M= -4,-65, 51, 34,-62,-49, 29,-41, 32,-43,-40, -1,-23, 31, 22,-20,-30,-28,-70,-40; /M: SY='K'; M= 16,-33,-13,-12,-52, 9,-37,-50, 37,-51,-45, 19, 10, 33,-12, 23, -2,-34,-32, 11; /M: SY='H'; M=-45,-39,-41,-42,-56,-59,143,-74,-46,-56,-42,-31,-58,-35,-40,-46,-45,-73,-91,-25; /M: SY='T'; M= -8, 2,-51,-51, 6,-41,-21, -3,-18,-20, -9, 22,-58,-21, 19, -9, 57, 10,-14, 27; /M: SY='Q'; M=-25, -2,-44,-19,-25,-23,-32,-49, 33,-45,-24, 30,-38, 60, 8, 41,-12,-43,-20, 15; /I: I=-11; MD=-29; /M: SY='R'; M=-64,-58,-62,-70,-53,-59,-45,-54,-17,-81,-22,-24,-67, 17, 38,-15,-15,-58,-68,-64; D=-11; /I: I=-11; MI=0; MD=-29; IM=0; DM=-29; /M: SY='C'; M=-45,148,-68,-68,-60,-57,-34,-66,-53,-57,-57,-54,-79,-63,-70,-42,-49,-54,-89,-69; /M: SY='I'; M=-47,-65,-60,-46,-42,-34, 18, 62,-26,-31, 25,-41, 2,-39, 48,-10,-25, 13, 14, -8; /I: E1=0; IE=-255; DE=-255;» more |
Numerical results [info]
| Total number of hits | 14 in 7 different sequences |
| Number of true positive hits | 14 in 7 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Matrix type [info] | protein_domain |
| Scaling database [info] | reversed |
| Author [info] | CJA_Sigrist |
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 2 |
| Feature key [info] | ZN_FING |
| Feature description [info] | C2HC LYAR-type |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
7 sequences
LYAR_HUMAN (Q9NX58), LYAR_MOUSE (Q08288), LYAR_RAT(Q6AYK5), UBA1C_ARATH (O64571), YC16_YEAST (P37263), YH56_SCHPO (O94311), YQ58_CAEEL (Q09464)» more
|
| PDB [Detailed view] |
3 PDB
1WJV; 6ZMI; 6ZMO |