PROSITE entry PS51808
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PURL: https://purl.expasy.org/prosite/signature/PS51808
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General information about the entry
Entry name [info] | CHCH |
Accession [info] | PS51808 |
Entry type [info] | MATRIX |
Date [info] |
01-AUG-2016 CREATED;
01-AUG-2016 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
PROSITE Doc. [info] | PDOC51808 |
Associated ProRule [info] | PRU01150 |
Name and characterization of the entry
Description [info] | Coiled coil-helix-coiled coil-helix (CHCH) domain profile. |
Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=43; /DISJOINT: DEFINITION=PROTECT; N1=1; N2=43; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.5089412; R2=0.0082775; TEXT='-LogE'; /CUT_OFF: LEVEL=0; SCORE=966; N_SCORE=10.5; MODE=1; TEXT='R'; /CUT_OFF: LEVEL=-1; SCORE=483; N_SCORE=6.5; MODE=1; TEXT='R?'; /DEFAULT: M0=-49; D=-150; I=-150; B1=-1000; E1=-1000; MI=-380; MD=-380; IM=-380; DM=-380; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; BI=-380; BD=-380; /M: SY='H'; M= -2, 19, -4, -19, -4, 14, 40, -72, 5, -56, 7, -30,-105, 26, 35, 2, 35, -54, -1, 10; /M: SY='D'; M= 4, 19, 33, -6,-195, 30, -13, -55, 24,-192, -18, 18, 26, 32, 16, 13, -26,-106,-198,-186; /M: SY='P'; M= 1,-196, 3, 35,-188, -31, 28,-185, -23, -80, -68, 3, 76, 20, 21, -38, -47, -3,-192, 22; /M: SY='C'; M=-178, 162,-198,-198,-189,-194,-198,-195,-194,-186,-186,-184,-209,-202,-201,-181,-178,-183,-218,-199; /I: I=-45; MI=0; MD=-115; IM=0; DM=-115; /M: SY='W'; M= 29,-190, 6, -31, -8, 14, 5, -76, 5, 0, 29, -7, 0, 26, -87, 1, -16, -33, 61, 0; /M: SY='E'; M= -10,-194, 31, 60, -17, -50, 38, -63, 27,-101, -25, -28, 14, 39, -32, -20, -38, -11,-193, -1; /M: SY='E'; M= -15,-192,-169, 74, 19, -78, 7, -85, -82, 18, -37, -10, 31, 23, -46, -9, -16, -44,-189, -3; /M: SY='M'; M= 0, -26,-183, -37, 53, -25, -3, 21, 15, -14, 55, 33,-191, 9, 6, -47, -83, -35, 19, 8; /M: SY='K'; M= -9, 31, 25, 16, -69,-186, -25, -7, 60, -15, 11, -11,-185, 19, 21, -12, -7, -34,-196,-181; /M: SY='A'; M= 54,-189, 23, 44, -51,-179,-176, -37, 10, -30, -20, 6, -59, 48, -6, 8,-115, -81,-195,-183; /M: SY='Y'; M= -2,-191,-193,-188, 70,-192, -25, 15,-184, 21, -16,-188, 11, -43, -15, 5,-178, -84, 26, 79; /M: SY='M'; M= -56,-192, 22, -8, 27, -25, 38, -6, -18, 32, 56, -23,-190, 43, -48, -47, -27, -25, 47, -55; /M: SY='Q'; M= -33,-193, 30, 44,-192, -39, -81,-191, 53, -21,-181, 0,-182, 54, 30, 3, -1,-187,-195, -41; /M: SY='C'; M=-178, 162,-198,-198,-189,-194,-198,-195,-194,-186,-186,-184,-209,-202,-201,-181,-178,-183,-218,-199; /M: SY='M'; M= -6, -38,-191, -87, 31,-193, 43, 16, -9, 41, 49,-184,-193, -1, 11, -28, -83, -13, 46, 23; /M: SY='W'; M= -12,-192, 17, -8, -73,-185, 25, -65, 59, -44, -18, -5,-185, 34, 27, -3, 7, -3, 64, -42; /I: I=-18; MD=-45; /M: SY='E'; M= 3,-195, 32, 61, -47, -35, -26,-192, -8, -45, -71, 20,-185, 24, 10, 3, -28,-113,-192, 35; D=-18; /I: I=-18; MD=-45; /M: SY='N'; M= -65, -49, -24, -2, -24, -21, 48, -40, 24,-188, -1, 87, -48,-169, -49, 21, 4, -67, 29, -2; D=-18; /I: I=-18; MD=-45; /M: SY='Q'; M= -41,-195, -24, 19, -4, 45,-177,-193, 2, -85, -63, 36, 26, 50, -21, -28, 18,-190,-191, 8; D=-18; /I: I=-18; MD=-45; /M: SY='Y'; M= -1,-195, 26, 38, -15, -1, 30, -2, -63, -71, -16, 17, -19, 26, -42, 5, -79, -65,-187, 55; D=-18; /I: I=-18; MD=-45; /M: SY='D'; M= -44,-196, 61, 39, -23, -34,-176, -64, -4, -14, 7, 26, 29, 22, -26, -2, -49, -91, 22,-183; D=-18; /I: I=-18; MD=-45; /M: SY='W'; M= -31,-196, -2, 14, 10, -28,-182, -37, 28, -30, -40, 10, 28, -55, 43, -28, -18, 6, 46,-179; D=-18; /I: I=-18; MD=-45; /M: SY='W'; M= 11,-198, 5, -1, 15, 9, -28, -15, 16, -22, -25, -40, -18, -49, -42, 15, -38, -39, 26, -64; D=-18; /I: I=-18; MI=0; MD=-45; IM=0; DM=-45; /M: SY='K'; M= 1,-192, 27, 25, -66,-185, 33,-181, 48, 12, -3, 21, 5, 19, 11, -50, -51, -45,-194, -10; /M: SY='C'; M=-178, 162,-198,-198,-189,-194,-198,-195,-194,-186,-186,-184,-209,-202,-201,-181,-178,-183,-218,-199; /M: SY='R'; M= 2,-190, -10, 26, -52, -44, 7, -16, 24, 4, -36, 19,-185, 3, 42, 18, 17, -42,-196,-180; /M: SY='E'; M= 1,-193, 45, 48,-188, 0, 13, -33, 45, -51,-182, 3, -20, -21, -14, -26, -32, -57, 4, 9; /M: SY='E'; M= -54, -79,-177, 60, 42,-106, 1, -47, 5, 44, -17,-112,-189, 31,-176,-181,-180, -33, 34, 37; /M: SY='F'; M= 1,-191, -14, -60, 54, 2, -26, 24, 2, -65, 40, 11,-189, 34, 15, 2,-175, -17, 19, -27; /M: SY='K'; M= -31,-194, 40, 39,-189, -72, 7,-118, 50, -88, 24, -40,-183, 32, 41, -17, -2, -31, 2, -4; /M: SY='A'; M= 53, -35, 35, 32, -97, -70, -63, -43, 6, -9,-176, -50,-184, 13, -9, 10, -22, 0,-196, -40; /M: SY='Y'; M=-185,-191,-197,-193, 71,-198, 11, -39,-189, 30, 58,-192,-199,-187,-187,-188,-180, 24, 32, 89; /M: SY='K'; M= -50,-193, -7, 0, 0, -96, -27, -38, 52, 5, 17, 27,-188, 29, 47, -96, -11, -58, 3, 15; /I: I=-45; MI=0; MD=-115; IM=0; DM=-115; /M: SY='Q'; M= -47,-194, 27, 51,-190, -51, -2, -33, 46, -10, -83, 13,-183, 54, 16, -7, -63, -69,-195, -38; /M: SY='C'; M=-179, 161,-199,-199,-189,-194,-199,-196,-195,-187,-187,-185,-210,-202,-201,-182,-179,-184,-219,-200; /M: SY='C'; M= 9, 41,-187, -25, -4,-190,-185, -72, 34, 17, 25,-182, 27, -77, 24, -52, 7, 31, 31,-177; /M: SY='R'; M= -22,-191, -89, 15, -51, -78, 15, -55, 32, 20, 34, -15,-187, 17, 40, 27, -2, -51,-190, 10; /M: SY='K'; M= 0,-193, 39, 36, -26, -20, -4,-194, 48, -87, -81, -29,-183, 37, 22, 35, -67,-189,-194, -26; /M: SY='W'; M= 6,-194, -8, 2, 31,-188, 48, -29, -19, -25, -3, 14,-191, 0, -15, -37, -34, -17, 104, 46; /M: SY='Y'; M= -27,-193,-186,-180, 8, 12, 23, -5, 2, 20, -12, -16, 26, 39, -16, -95, -41, 15,-184, 46; /M: SY='K'; M= -30, -23, 34, 17, -16, -18,-179, -8, 36, 9, -15, 9, -18, -4, 10, -19, 10, -46,-196, -76; /M: SY='M'; M= -22,-193, 32, 10, -25, -17, -29, -13, 10, -55, 65, -2, -1, 21, -4, 4, 1, -66, 33, 6; /M: SY='W'; M= -53,-196, -56, -14, -19, -60,-180, 12, 25, -20, 8, 8, -62, -8, 60, -19, -15, -12, 61, 13; /I: E1=0; IE=-380; DE=-380;» more |
Numerical results [info]
Total number of hits | 221 in 207 different sequences |
Number of true positive hits | 221 in 207 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 0 |
Number of false negative sequences | 3 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 100.00 % |
Recall (true positives / (true positives + false negatives)) | 98.66 % |
Comments [info]
Taxonomic range [info] | Eukaryotes |
Maximum number of repetitions [info] | 2 |
Matrix type [info] | protein_domain |
Scaling database [info] | reversed |
Author [info] | CJA_Sigrist |
Feature key [info] | DOMAIN |
Feature description [info] | CHCH |
Version [info] | 1 |
Cross-references [info]