PROSITE entry PS51849
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General information about the entry
| PURL [info] | https://purl.expasy.org/prosite/signature/PS51849 |
| Entry name [info] | RSGI_N |
| Accession [info] | PS51849 |
| Entry type [info] | MATRIX |
| Date [info] |
31-JAN-2018 CREATED;
26-FEB-2020 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC51849 |
| Associated ProRule [info] | PRU01196 |
Name and characterization of the entry
| Description [info] | RsgI N-terminal anti-sigma domain profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=48; /DISJOINT: DEFINITION=PROTECT; N1=5; N2=44; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.1056739; R2=0.0090989; TEXT='-LogE'; /NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=4674.6215820; R2=3.0675676; PRIORITY=1; TEXT='Heuristic 5.0%'; /CUT_OFF: LEVEL=0; SCORE=978; H_SCORE=7675; N_SCORE=10.0; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=593; H_SCORE=6494; N_SCORE=6.5; MODE=1; TEXT='?'; /DEFAULT: M0=-9; D=-100; I=-100; B1=-1000; E1=-1000; MI=-255; MD=-255; IM=-255; DM=-255; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; BI=-255; BD=-255; /M: SY='M'; M=-25,-22,-16, -6,-10,-10, 7, 0, 26,-15, 37, 30,-26, 12, 4, -8,-15, -9,-30, 33; /M: SY='K'; M=-25,-39,-20, 0,-30,-34, -5,-29, 62,-25,-26, -2,-30, -4, 46, -9, 9,-24,-38,-17; /M: SY='G'; M= 17,-37,-28,-36,-44, 80,-34,-46,-29,-44,-35,-15,-31,-29,-38, -9,-24,-28,-38,-40; /M: SY='I'; M=-23, -2,-45,-41,-14,-48,-43, 60,-32, 15, 24,-37,-39,-36,-27,-29, -1, 43,-41,-21; /M: SY='V'; M=-14, 0,-47,-42,-16,-48,-48, 49,-39, 4, -4,-41,-41,-40,-41,-31,-17, 65,-46,-24; /M: SY='M'; M=-22,-14,-47,-40, -1,-46,-32, 31,-37, 36, 69,-40,-40,-32,-36,-35,-19, 34,-37,-10; /M: SY='E'; M=-15,-41, 24, 63,-44,-32,-18,-43, 32,-34,-33, 2,-24, 16, 3, 5,-20,-38,-43,-33; /M: SY='I'; M=-20,-25,-36,-23, -7,-42,-12, 43, 15, 13, 3,-25,-36, -7,-12,-10, 1, 32,-39,-18; /M: SY='K'; M=-17,-39, 18, 27,-27, -8, 24,-35, 39,-31,-24, 25,-29, 15, 11, -1, -2,-28,-42,-14; /M: SY='K'; M=-18,-40, 18, 22,-37, 30,-11,-44, 41,-41,-33, 22,-17, -6, 19, -5,-12,-40,-42,-32; /M: SY='K'; M=-25,-40, 28, 6,-35, -2, 9,-42, 39,-37,-20, 37,-18, 3, 35, -3,-12,-39,-44,-18; /M: SY='Y'; M=-21,-20,-14, -8, 13,-22, 36,-30, 20,-20, -6, 9,-35, 4, 15, 13, 0,-28, 6, 52; /M: SY='A'; M= 40, 23,-36,-32,-23,-18,-34, 19,-31, 2, 22,-25,-35,-28,-34, 0, 5, 21, 7,-11; /M: SY='I'; M=-14,-35,-41,-40,-10,-37,-26, 57,-36, 6, 3,-29,-37,-35,-39,-25, 16, 38,-14, 18; /M: SY='V'; M=-10,-20,-47,-41, -1,-47,-43, 42,-39, 20, 8,-41,-41,-38,-40,-32,-18, 59,-41,-10; /M: SY='M'; M=-17,-33,-46,-38, 9,-44,-27, 8,-36, 52, 68,-40,-42,-30,-28,-35,-21, 7,-32, 3; /M: SY='T'; M= -9, 2, -9,-22,-31,-28,-29,-22, -8,-14, -7, 2,-25,-12,-23, 11, 77,-13,-49,-29; /M: SY='P'; M= 1,-21, 27, 29,-43, -9,-17,-40, 9,-38,-32, 5, 40, 10, 7, 21,-12,-33,-44,-29; /M: SY='D'; M=-25,-28, 71, 25,-39, -4, -2,-44, 7,-42,-26, 14,-29, 4, -9, 6, -3,-37,-53,-31; /M: SY='G'; M= -8, 30,-28,-37,-17, 76,-32,-42,-30,-36,-27, -1,-33,-29,-16, -3,-25,-40,-38,-36; /M: SY='E'; M= -6,-39, 23, 51,-42,-24,-18,-30, 0,-33,-30, -3,-26, 36, 16, 12, 8,-28,-44,-31; /M: SY='F'; M=-36,-21,-49,-45, 92,-46,-28, 2,-40, 3, -2,-40,-48,-47,-38,-36,-29, -6, 5, 37; /M: SY='I'; M=-20,-12,-32,-19, -4,-43, 3, 32, 12, 26, 10,-23,-38, -7, 17,-28,-20, 19,-35, 1; /M: SY='K'; M=-13,-12,-16, 17,-32,-32, -6,-35, 55,-34,-23, 14,-29, 2, 41, -6, -1,-29,-38,-13; /M: SY='I'; M= -4,-25,-44,-41, -1,-10,-43, 55,-38, 12, 4,-36,-38,-36,-41,-20,-13, 43,-40,-21; /M: SY='K'; M=-22,-42,-15,-10,-31,-33, -7,-26, 55,-32,-13, 3, 42, -2, 34,-14,-11,-23,-36, 1; /M: SY='R'; M=-11, -3,-17,-20,-28,-28, -9,-13, 30, 3, -3, 21, 8,-16, 34, -7, 11, -7,-19, -8; /I: I=-24; MI=0; MD=-61; IM=0; DM=-61; /M: SY='K'; M=-16,-31, -6, 1,-20, -5, -6,-17, 30,-26,-21, 12,-26, 8, 24, -1, 7,-17,-43,-19; D=-24; /I: I=-24; DM=-61; /M: SY='P'; M= -7,-30, 18, 22,-36, 8, -1,-27, 23,-34,-30, 15, 27, 13, 12, -2, -4,-29,-42,-19; /M: SY='N'; M=-11,-38, 24, 9,-35, 26, 4,-18, 0,-20,-24, 34, 19, 1, -8, 7, -8,-27,-45,-31; /M: SY='P'; M= 3, 11,-31,-22,-14,-29, -9, 4,-29, 8, 41,-19, 42,-17,-23,-17,-11, 13, 10, 30; /M: SY='E'; M= -6,-38, 7, 31,-15,-29,-10,-15, 16,-13, 5, 2,-21, 29, 15, 6, -7,-11,-37, 5; /M: SY='I'; M=-21,-36,-40,-12,-16,-47,-41, 51,-15, 17, -1,-37, -4,-32,-26,-31,-13, 47,-42,-23; /M: SY='G'; M=-12,-40,-27,-39,-46, 87,-34,-54,-33,-49,-38, -8,-31,-30,-40, -9,-31,-47,-37,-41; /M: SY='Q'; M=-15,-42, 31, 52,-43,-33, -7,-37, 6,-31, 10,-11,-26, 58, -3, -5,-15,-30,-42,-20; /M: SY='E'; M=-17,-41, 2, 71,-38,-38,-12,-16, 8,-24,-24,-16,-23, 20, -8,-15, -4,-10,-42,-19; /M: SY='I'; M=-13,-19,-45,-42, -1,-41,-39, 61,-35, 5, 4,-38,-28,-36,-40,-29,-11, 40,-33, 21; /M: SY='E'; M=-18, -8, 7, 31, -4,-32, -1, -4, -7, -6, -8,-18, -1, 5, -7, 11, 14, -4, 8, 18; /M: SY='F'; M=-20,-29,-43,-41, 64, 6,-32, 23,-34, 10, 0,-32,-30,-39,-32,-26,-20, 17, -6, 26; /M: SY='P'; M= -7,-38, 18, 22,-14,-21,-11,-17, 14,-16,-25, 8, 29, 2, 0, 4, 20,-23,-40, -7; /M: SY='P'; M= -8,-40, 20, 36,-31,-31,-16,-22, 2,-11,-21, 4, 43, 2, -4, 5, -6, -6,-43,-15; /M: SY='K'; M=-13,-38, -8, 20, -7,-19,-18, -8, 28, -5,-11, 4,-13, 8, 11, 8, -6, -1, 10, -1; /M: SY='D'; M=-11,-38, 41, 18,-26,-17,-21,-28, 28,-26,-13, 9, 2, -1, 11, 6, 2,-10,-44,-18; /M: SY='I'; M=-10,-37,-26, -3, 0, -9, 9, 27, 10, 5, -6,-13,-14,-14, 18, 2,-10, 9,-15,-18; /M: SY='R'; M= -9, 4,-17,-19, -3,-21, -3, 15, 2, 1,-10, 9, 3, 3, 23, 3,-10, -3, -2, 18; /M: SY='K'; M=-14,-26,-19, 1, 9,-22, -4,-11, 25,-17,-16, 19, 3, 10, 24, 13, -1,-11, 3, -8; /M: SY='R'; M= -5,-38, -5, 3, 11,-10, 15,-20, 19, 2,-20, 8, 7, -6, 20, -5, -7,-11, -1, -1; /M: SY='R'; M=-13,-38,-21, -1, 4, 1, -9, -8, 18, -8, -6, 4, 3, -3, 19, 9, 0,-13, 19, 17; /I: E1=0; IE=-255; DE=-255;» more |
Numerical results [info]
| Total number of hits | 11 in 11 different sequences |
| Number of true positive hits | 11 in 11 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Taxonomic range [info] | Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Matrix type [info] | protein_domain |
| Scaling database [info] | reversed |
| Author [info] | CJA_Sigrist |
| Feature key [info] | DOMAIN |
| Feature description [info] | RsgI N-terminal anti-sigma |
| Version [info] | 3 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
11 sequences
RSGI1_ACET2 (A3DBH1), RSGI2_ACET2 (A3DC27), RSGI3_ACET2 (A3DC75), RSGI4_ACET2 (A3DCG3), RSGI5_ACET2 (A3DEX6), RSGI6_ACET2 (A3DH97), RSGI7_ACET2 (A3DIE5), RSGI8_ACET2 (A3DJP2), RSGI9_ACET2 (A3DC20), RSGI_BACAN (P0DO99), RSGI_BACSU (O31655)» more
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| PDB [Detailed view] |
2 PDB
6IVS; 6IVU |