PROSITE logo

PROSITE entry PS51849


View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission
General information about the entry

Entry name [info] RSGI_N
Accession [info] PS51849
Entry type [info] MATRIX
Date [info] 31-JAN-2018 CREATED;
26-FEB-2020 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC51849
Associated ProRule [info] PRU01196

Name and characterization of the entry

Description [info] RsgI N-terminal anti-sigma domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=48;
/DISJOINT: DEFINITION=PROTECT; N1=5; N2=44;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.1056739; R2=0.0090989; TEXT='-LogE';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=4674.6215820; R2=3.0675676; PRIORITY=1; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=978; H_SCORE=7675; N_SCORE=10.0; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=593; H_SCORE=6494; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-9; D=-100; I=-100; B1=-1000; E1=-1000; MI=-255; MD=-255; IM=-255; DM=-255;
...
                A   C   D   E   F   G   H   I   K   L   M   N   P   Q   R   S   T   V   W   Y
/I:         B1=0; BI=-255; BD=-255;
/M: SY='M';  M=-25,-22,-16, -6,-10,-10,  7,  0, 26,-15, 37, 30,-26, 12,  4, -8,-15, -9,-30, 33;
/M: SY='K';  M=-25,-39,-20,  0,-30,-34, -5,-29, 62,-25,-26, -2,-30, -4, 46, -9,  9,-24,-38,-17;
/M: SY='G';  M= 17,-37,-28,-36,-44, 80,-34,-46,-29,-44,-35,-15,-31,-29,-38, -9,-24,-28,-38,-40;
/M: SY='I';  M=-23, -2,-45,-41,-14,-48,-43, 60,-32, 15, 24,-37,-39,-36,-27,-29, -1, 43,-41,-21;
/M: SY='V';  M=-14,  0,-47,-42,-16,-48,-48, 49,-39,  4, -4,-41,-41,-40,-41,-31,-17, 65,-46,-24;
/M: SY='M';  M=-22,-14,-47,-40, -1,-46,-32, 31,-37, 36, 69,-40,-40,-32,-36,-35,-19, 34,-37,-10;
/M: SY='E';  M=-15,-41, 24, 63,-44,-32,-18,-43, 32,-34,-33,  2,-24, 16,  3,  5,-20,-38,-43,-33;
/M: SY='I';  M=-20,-25,-36,-23, -7,-42,-12, 43, 15, 13,  3,-25,-36, -7,-12,-10,  1, 32,-39,-18;
/M: SY='K';  M=-17,-39, 18, 27,-27, -8, 24,-35, 39,-31,-24, 25,-29, 15, 11, -1, -2,-28,-42,-14;
/M: SY='K';  M=-18,-40, 18, 22,-37, 30,-11,-44, 41,-41,-33, 22,-17, -6, 19, -5,-12,-40,-42,-32;
/M: SY='K';  M=-25,-40, 28,  6,-35, -2,  9,-42, 39,-37,-20, 37,-18,  3, 35, -3,-12,-39,-44,-18;
/M: SY='Y';  M=-21,-20,-14, -8, 13,-22, 36,-30, 20,-20, -6,  9,-35,  4, 15, 13,  0,-28,  6, 52;
/M: SY='A';  M= 40, 23,-36,-32,-23,-18,-34, 19,-31,  2, 22,-25,-35,-28,-34,  0,  5, 21,  7,-11;
/M: SY='I';  M=-14,-35,-41,-40,-10,-37,-26, 57,-36,  6,  3,-29,-37,-35,-39,-25, 16, 38,-14, 18;
/M: SY='V';  M=-10,-20,-47,-41, -1,-47,-43, 42,-39, 20,  8,-41,-41,-38,-40,-32,-18, 59,-41,-10;
/M: SY='M';  M=-17,-33,-46,-38,  9,-44,-27,  8,-36, 52, 68,-40,-42,-30,-28,-35,-21,  7,-32,  3;
/M: SY='T';  M= -9,  2, -9,-22,-31,-28,-29,-22, -8,-14, -7,  2,-25,-12,-23, 11, 77,-13,-49,-29;
/M: SY='P';  M=  1,-21, 27, 29,-43, -9,-17,-40,  9,-38,-32,  5, 40, 10,  7, 21,-12,-33,-44,-29;
/M: SY='D';  M=-25,-28, 71, 25,-39, -4, -2,-44,  7,-42,-26, 14,-29,  4, -9,  6, -3,-37,-53,-31;
/M: SY='G';  M= -8, 30,-28,-37,-17, 76,-32,-42,-30,-36,-27, -1,-33,-29,-16, -3,-25,-40,-38,-36;
/M: SY='E';  M= -6,-39, 23, 51,-42,-24,-18,-30,  0,-33,-30, -3,-26, 36, 16, 12,  8,-28,-44,-31;
/M: SY='F';  M=-36,-21,-49,-45, 92,-46,-28,  2,-40,  3, -2,-40,-48,-47,-38,-36,-29, -6,  5, 37;
/M: SY='I';  M=-20,-12,-32,-19, -4,-43,  3, 32, 12, 26, 10,-23,-38, -7, 17,-28,-20, 19,-35,  1;
/M: SY='K';  M=-13,-12,-16, 17,-32,-32, -6,-35, 55,-34,-23, 14,-29,  2, 41, -6, -1,-29,-38,-13;
/M: SY='I';  M= -4,-25,-44,-41, -1,-10,-43, 55,-38, 12,  4,-36,-38,-36,-41,-20,-13, 43,-40,-21;
/M: SY='K';  M=-22,-42,-15,-10,-31,-33, -7,-26, 55,-32,-13,  3, 42, -2, 34,-14,-11,-23,-36,  1;
/M: SY='R';  M=-11, -3,-17,-20,-28,-28, -9,-13, 30,  3, -3, 21,  8,-16, 34, -7, 11, -7,-19, -8;
/I:         I=-24; MI=0; MD=-61; IM=0; DM=-61;
/M: SY='K';  M=-16,-31, -6,  1,-20, -5, -6,-17, 30,-26,-21, 12,-26,  8, 24, -1,  7,-17,-43,-19; D=-24;
/I:         I=-24; DM=-61;
/M: SY='P';  M= -7,-30, 18, 22,-36,  8, -1,-27, 23,-34,-30, 15, 27, 13, 12, -2, -4,-29,-42,-19;
/M: SY='N';  M=-11,-38, 24,  9,-35, 26,  4,-18,  0,-20,-24, 34, 19,  1, -8,  7, -8,-27,-45,-31;
/M: SY='P';  M=  3, 11,-31,-22,-14,-29, -9,  4,-29,  8, 41,-19, 42,-17,-23,-17,-11, 13, 10, 30;
/M: SY='E';  M= -6,-38,  7, 31,-15,-29,-10,-15, 16,-13,  5,  2,-21, 29, 15,  6, -7,-11,-37,  5;
/M: SY='I';  M=-21,-36,-40,-12,-16,-47,-41, 51,-15, 17, -1,-37, -4,-32,-26,-31,-13, 47,-42,-23;
/M: SY='G';  M=-12,-40,-27,-39,-46, 87,-34,-54,-33,-49,-38, -8,-31,-30,-40, -9,-31,-47,-37,-41;
/M: SY='Q';  M=-15,-42, 31, 52,-43,-33, -7,-37,  6,-31, 10,-11,-26, 58, -3, -5,-15,-30,-42,-20;
/M: SY='E';  M=-17,-41,  2, 71,-38,-38,-12,-16,  8,-24,-24,-16,-23, 20, -8,-15, -4,-10,-42,-19;
/M: SY='I';  M=-13,-19,-45,-42, -1,-41,-39, 61,-35,  5,  4,-38,-28,-36,-40,-29,-11, 40,-33, 21;
/M: SY='E';  M=-18, -8,  7, 31, -4,-32, -1, -4, -7, -6, -8,-18, -1,  5, -7, 11, 14, -4,  8, 18;
/M: SY='F';  M=-20,-29,-43,-41, 64,  6,-32, 23,-34, 10,  0,-32,-30,-39,-32,-26,-20, 17, -6, 26;
/M: SY='P';  M= -7,-38, 18, 22,-14,-21,-11,-17, 14,-16,-25,  8, 29,  2,  0,  4, 20,-23,-40, -7;
/M: SY='P';  M= -8,-40, 20, 36,-31,-31,-16,-22,  2,-11,-21,  4, 43,  2, -4,  5, -6, -6,-43,-15;
/M: SY='K';  M=-13,-38, -8, 20, -7,-19,-18, -8, 28, -5,-11,  4,-13,  8, 11,  8, -6, -1, 10, -1;
/M: SY='D';  M=-11,-38, 41, 18,-26,-17,-21,-28, 28,-26,-13,  9,  2, -1, 11,  6,  2,-10,-44,-18;
/M: SY='I';  M=-10,-37,-26, -3,  0, -9,  9, 27, 10,  5, -6,-13,-14,-14, 18,  2,-10,  9,-15,-18;
/M: SY='R';  M= -9,  4,-17,-19, -3,-21, -3, 15,  2,  1,-10,  9,  3,  3, 23,  3,-10, -3, -2, 18;
/M: SY='K';  M=-14,-26,-19,  1,  9,-22, -4,-11, 25,-17,-16, 19,  3, 10, 24, 13, -1,-11,  3, -8;
/M: SY='R';  M= -5,-38, -5,  3, 11,-10, 15,-20, 19,  2,-20,  8,  7, -6, 20, -5, -7,-11, -1, -1;
/M: SY='R';  M=-13,-38,-21, -1,  4,  1, -9, -8, 18, -8, -6,  4,  3, -3, 19,  9,  0,-13, 19, 17;
/I:         E1=0; IE=-255; DE=-255;
» more

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_05 which contains 572'214 sequence entries.


Total number of hits 11 in 11 different sequences
Number of true positive hits 11 in 11 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Feature key [info] DOMAIN
Feature description [info] RsgI N-terminal anti-sigma
Version [info] 3

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
11 sequences

RSGI1_ACET2 (A3DBH1), RSGI2_ACET2 (A3DC27), RSGI3_ACET2 (A3DC75), 
RSGI4_ACET2 (A3DCG3), RSGI5_ACET2 (A3DEX6), RSGI6_ACET2 (A3DH97), 
RSGI7_ACET2 (A3DIE5), RSGI8_ACET2 (A3DJP2), RSGI9_ACET2 (A3DC20), 
RSGI_BACAN  (P0DO99), RSGI_BACSU  (O31655)
» more

PDB
[Detailed view]
2 PDB

6IVS; 6IVU