PROSITE entry PS51888
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General information about the entry
| Entry name [info] | CLIP |
| Accession [info] | PS51888 |
| Entry type [info] | MATRIX |
| Date [info] |
08-MAY-2019 CREATED;
08-MAY-2019 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC51888 |
| Associated ProRule [info] | PRU01236 |
Name and characterization of the entry
| Description [info] | Clip domain profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=53; /DISJOINT: DEFINITION=PROTECT; N1=1; N2=53; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=3.0961080; R2=0.0063122; TEXT='-LogE'; /CUT_OFF: LEVEL=0; SCORE=1094; N_SCORE=10.0; MODE=1; TEXT='R'; /CUT_OFF: LEVEL=-1; SCORE=540; N_SCORE=6.5; MODE=1; TEXT='R?'; /DEFAULT: M0=-41; D=-150; I=-150; B1=-1000; E1=-1000; MI=-380; MD=-380; IM=-380; DM=-380; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; BI=-380; BD=-380; /M: SY='P'; M= -11, -76, 2, 21, 7, -16, -59, -70, -2, -20, -64, -57, 61, -52, 34, 40, -55, -68, -71, 10; /M: SY='C'; M=-109, 159,-129,-129,-119,-124,-129,-126,-124,-116,-117,-115,-139,-132,-131,-111,-109,-113,-149,-130; /M: SY='T'; M= -57, -72, -56, -54, -74, 9, -58, -18, 1, -70, -62, 33, -67, 40, 56, 0, 66, -63, -80, -65; /I: I=-33; MD=-84; /M: SY='T'; M= 13, -67, -60, -63, -71, -67, -67, -58, -58, -66, -62, 33, 4, -62, 2, -45, 87, 15, -88, -69; D=-33; /I: I=-33; MD=-84; /M: SY='P'; M= -14, -84, -66, -58, -84, 9, -66, -78, -54, -81, -70, -64, 95, 8, 43, -2, 0, -76, -80, -77; D=-33; /I: I=-33; MI=0; MD=-84; IM=0; DM=-84; /M: SY='N'; M= -62, -75, 76, -49, 3, -4, -54, -80, -57, -81, -76, 77, -72, -56, -64, 33, -53, -79, -91, -68; D=-33; /I: I=-33; DM=-84; /M: SY='G'; M= -57, -79, 26, -7, -84, 71, -63, -84, -58, -81, -72, 2, -69, 51, -10, -51, 24, -79, -81, -74; D=-33; /I: I=-33; DM=-84; /M: SY='E'; M= -59, -75, 4, 53, -70, 25, -59, -6, 16, -1, 26, 4, -65, 13, 5, -55, 22, -62, -78, -66; /M: SY='Q'; M= 21, -74, -55, 1, -79, -9, -58, -75, 35, -75, -65, 22, 36, 54, 19, 19, 5, -70, -78, -68; /M: SY='G'; M= 34, -73, -64, -68, -81, 89, -69, -83, 15, -81, -71, -52, -67, -62, -66, -48, -63, -75, -74, -75; /M: SY='Q'; M= -58, -71, -59, -57, -62, -69, -58, 20, -9, -24, -54, 43, -69, 52, 20, 2, 52, 11, -75, 18; /M: SY='C'; M=-109, 159,-129,-129,-119,-124,-129,-126,-124,-116,-117,-115,-139,-132,-131,-111,-109,-113,-149,-130; /M: SY='I'; M= -61, -73, -74, -4, -53, -83, -72, 59, 22, 31, 27, -71, -74, -62, 1, -68, -58, 44, -76, -59; /M: SY='P'; M= -57, -74, -58, -59, -71, -17, 46, -62, -57, -18, -61, 47, 71, -57, -4, 43, 3, 9, -84, -66; /M: SY='I'; M= -9, -71, -78, -75, 8, -77, -70, 59, -73, 30, -41, -72, -76, -69, -74, 18, -55, 38, -66, 38; /M: SY='Y'; M= -60, -75, -53, 35, -58, -68, 51, -3, -1, -18, -58, 29, -69, -48, 35, 34, -3, -63, -69, 53; /M: SY='D'; M= -10, -74, 64, 42, -79, -62, -54, -74, -48, -76, -70, 32, -65, 18, 22, 44, -51, -21, -86, -68; /M: SY='C'; M=-109, 159,-129,-129,-119,-124,-129,-126,-124,-116,-117,-115,-139,-132,-131,-111,-109,-113,-149,-130; /M: SY='P'; M= -60, -79, 25, 24, -77, 8, -59, -74, 41, -19, -65, -53, 51, 30, 27, -3, 1, -72, -78, -69; /I: I=-31; MI=0; MD=-79; IM=0; DM=-79; /M: SY='Y'; M= -26, -73, 2, -65, -45, -70, -56, 34, -64, -14, -51, 9, -1, -62, -67, 21, 37, -3, -58, 81; /M: SY='L'; M= -63, -72, -83, -76, 11, -84, -75, 48, -76, 56, -37, -79, 30, -74, -77, -72, -59, 42, -73, -55; /M: SY='W'; M= -18, -76, 2, 33, 29, -77, -60, -53, -55, 47, -48, -68, -75, -56, 42, -66, -64, -57, 59, 34; /M: SY='E'; M= 6, -77, 43, 61, -83, 26, -56, -81, 0, -77, -70, 6, -63, 55, -54, -3, -58, -75, -80, -70; /M: SY='Y'; M= -62, -73, -72, -67, -43, -78, -58, 14, -4, 33, 19, -68, -76, 13, 0, -11, 5, 27, -59, 72; /I: I=-17; MD=-44; /M: SY='L'; M= -67, -74, -85, -78, -47, -89, -74, 45, -74, 70, -35, -82, -83, -72, 1, -77, -63, 18, -76, -58; D=-17; /I: I=-17; MD=-44; /M: SY='K'; M= -62, -75, -59, -52, -73, -71, -59, -60, 64, -24, 20, 40, -70, 50, 2, -56, 19, 16, -81, -66; D=-17; /I: I=-17; MD=-44; /M: SY='T'; M= -63, -77, 8, -3, -81, -72, 30, -73, -8, -76, -70, 24, -72, 38, -63, 17, 62, -17, -94, -71; D=-17; /I: I=-17; MD=-44; /M: SY='P'; M= -16, -91, -3, 14, -97, 13, -77, -94, -72, -94, -86, -68, 33, 23, -78, 31, -12, -88, -97, -88; D=-17; /I: I=-17; MD=-44; /M: SY='N'; M= -86,-102, 0, -12, -91, 8, -78, -95, -78, -31, -87, 30, 24, 9, -22, -79, -83, -97, -96, 10; D=-17; /I: I=-17; MI=0; MD=-44; IM=0; DM=-44; /M: SY='T'; M= -20, -88, 25, -73, -95, -81, -82, -90, -75, -93, -87, -67, 5, -76, -15, 33, 52, -83,-106, -88; D=-17; /I: I=-17; DM=-44; /M: SY='P'; M= -17, -97, -9, 16, -95, 7, 66, -94, -72, -92, -81, -70, 70, -7, -78, -71, -76, -92, -97, -80; D=-17; /I: I=-17; DM=-44; /M: SY='E'; M= 19, -78, 4, 55, -78, -67, -59, -79, -55, -78, -71, 9, -69, 48, -61, 33, -9, -74, -80, 14; D=-17; /I: I=-17; DM=-44; /M: SY='D'; M= -21, -82, 72, -56, -74, 38, -64, -5, -66, -21, -69, 7, -76, 7, -72, -61, -65, -18, -84, 13; D=-17; /I: I=-17; DM=-44; /M: SY='T'; M= 5, -76, -69, -21, -65, -77, -68, 28, -57, -19, -58, 10, -75, -62, 46, -58, 50, -7, -79, 15; D=-17; /I: I=-17; DM=-44; /M: SY='R'; M= -66, -76, -7, -66, 26, -75, -66, -10, -19, 15, -58, 32, -78, -63, 36, 19, 24, -13, -80, -60; D=-17; /I: I=-17; DM=-44; /M: SY='F'; M= -73, -79, 22, -71, 68, -81, 23, -58, -74, 18, -55, -69, -84, -72, -73, -7, -1, -62, -56, 67; D=-17; /I: I=-17; DM=-44; /M: SY='L'; M= -67, -71, -83, -78, -47, -87, -73, 19, -78, 76, -35, -79, -82, -73, -77, -71, 26, -4, -77, -58; D=-17; /I: I=-17; DM=-44; /M: SY='R'; M= -59, -77, 5, -3, -78, -66, -53, -80, 5, -76, -66, 10, -69, 38, 86, 43, -55, -74, -79, -64; /I: I=-42; MI=0; MD=-106; IM=0; DM=-106; /M: SY='A'; M= 42, -71, -13, -1, -73, 27, -65, -3, 17, -66, -61, 7, 14, 5, -8, -51, 2, 15, -79, -69; /M: SY='S'; M= -9, -68, 6, -58, -67, -58, -61, -59, -60, 16, -59, 30, 35, -55, -65, 77, -45, -5, -82, -66; /M: SY='Q'; M= -58, -75, -60, 19, -66, -72, 28, 22, -2, 6, -50, -58, -69, 82, -54, 19, -56, 28, -77, -60; /M: SY='C'; M=-109, 159,-129,-129,-119,-124,-129,-126,-124,-116,-117,-115,-139,-132,-131,-111,-109,-113,-149,-130; /M: SY='G'; M= -52, -75, -59, 17, -78, 80, -65, -79, -11, -24, -68, -52, -67, 11, 3, 2, 2, -75, -75, -72; /I: I=-17; MD=-42; /M: SY='Y'; M= -66, -77, 27, -5, 48, -14, 31, -63, -66, 2, -58, -61, -76, -64, -69, 14, 13, -65, 61, 61; D=-17; /I: I=-17; MD=-42; /M: SY='R'; M= -73, -89, -3, 33, 0, 27, -71, -85, -19, -24, -76, 12, -81, -63, 38, -68, -13, -83, -88, -75; D=-17; /I: I=-17; MI=0; MD=-42; IM=0; DM=-42; /M: SY='N'; M= 11, -74, 1, -60, -80, 31, -58, -77, -3, -23, -70, 82, -74, 17, -62, -4, -57, -75, -87, -74; D=-17; /I: I=-17; DM=-42; /M: SY='W'; M= -63, -82, -62, -6, -78, 51, -65, -10, -53, -80, -72, 47, 8, -58, 52, -20, -65, -77, 54, -71; D=-17; /I: I=-17; MI=0; MD=-42; IM=0; DM=-42; /M: SY='Q'; M= -57, -74, -56, 0, -63, 11, -55, -4, -10, -63, -58, 46, -70, 66, -2, -3, 2, 24, -71, 37; /M: SY='P'; M= -17, -82, -63, 22, -66, -72, -64, -9, -58, 0, -57, -69, 94, 11, -2, -62, -59, 6, -73, 18; /M: SY='I'; M= -26, -74, 23, -61, -54, -76, 26, 46, 19, 34, -44, -62, -73, 8, -61, -8, -57, 20, -73, 15; /M: SY='V'; M= -58, -70, -85, -80, 31, -86, -82, 61, -77, -7, -40, -78, -78, -78, -78, -70, -55, 78, -75, -53; /M: SY='C'; M=-109, 159,-129,-129,-119,-124,-129,-126,-124,-116,-117,-115,-139,-132,-131,-111,-109,-113,-149,-130; /M: SY='C'; M=-109, 159,-129,-129,-119,-124,-129,-126,-124,-116,-117,-115,-139,-132,-131,-111,-109,-113,-149,-130; /I: E1=0; IE=-380; DE=-380;» more |
Post-processing [info]
| PROMOTED_BY | PS50240 |
Numerical results [info]
| Total number of hits | 24 in 23 different sequences |
| Number of true positive hits | 24 in 23 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 4 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 85.71 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 2 |
| Matrix type [info] | protein_domain |
| Scaling database [info] | reversed |
| Author [info] | CJA_Sigrist |
| Feature key [info] | DOMAIN |
| Feature description [info] | Clip |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
23 sequences
CFB_TACTR (Q27081), CLB10_ANOGA (Q7QBP4), CLB14_ANOGA (Q9NAS8), CLB15_ANOGA (Q9NAS9), CLB4_ANOGA (Q7PEV7), CLB9_ANOGA (F5HKX0), CLC9_ANOGA (A0A1S4GMJ4), EAST_DROME (P13582), GRASS_DROME (Q9VB68), HAYAN_DROME (A8JUP7), HP8_BOMMO (Q2VG86), MP1_DROME (A0A126GUP6), PCE_TACTR (P21902), PPAE1_SPOLT (Q49QW1), PPAE_BOMMO (Q9XXV0), PPAF1_HOLDI (O97366), PPAF2_HOLDI (Q9GRW0), PPAF3_HOLDI (Q8I6K0), PSH_DROME (Q9VWU1), SER7_DROME (Q9V3Z2), SNAK_DROME (P05049), SPE_DROME (Q9VCJ8), VSP_BOMIG (B5U2W0)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
4 sequences
CLA28_ANOGA (A0A1S4H5M5), CLA30_ANOGA (A0A1S4HE51), CLA8_ANOGA (A0A1S4H5S2), CLB8_ANOGA (Q8MZM7)» more |
| PDB [Detailed view] |
2 PDB
2B9L; 2XXL |