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PROSITE entry PS51927


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PURL: https://purl.expasy.org/prosite/signature/PS51927

Direct ScanProsite submission
General information about the entry

Entry name [info] COV_M
Accession [info] PS51927
Entry type [info] MATRIX
Date [info] 07-OCT-2020 CREATED;
07-APR-2021 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC51927
Associated ProRule [info] PRU01275

Name and characterization of the entry

Description [info] Coronavirus membrane (Cov-M) protein profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=229;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=224;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.6182563; R2=0.0122128; TEXT='-LogE';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=-13625.0214844; R2=35.0829544; TEXT='Heuristic 0.5%';
/CUT_OFF: LEVEL=0; SCORE=769; H_SCORE=13354; N_SCORE=12.0; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=318; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-9; D=-50; I=-50; B1=-500; E1=-500; MI=-105; MD=-105; IM=-105; DM=-105;
...
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.


Total number of hits 55 in 55 different sequences
Number of true positive hits 55 in 55 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Eukaryotic viruses
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
55 sequences

VME1_BC133  (Q0Q4E7), VME1_BC279  (Q0Q472), VME1_BC512  (Q0Q463), 
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PDB
[Detailed view]
10 PDB

3I6G; 7VGR; 7VGS; 7Y96; 7Y9B; 8CTK; 8W2E; 9CTU; 9CTW; 9EXA