PROSITE entry PS51930

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General information about the entry

Entry name [info]	BMC_2
Accession [info]	PS51930
Entry type [info]	MATRIX
Date [info]	07-OCT-2020 CREATED; 07-OCT-2020 DATA UPDATE; 27-MAR-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00876
Associated ProRule [info]	PRU01278

Name and characterization of the entry

Description [info]

Bacterial microcompartment (BMC) domain profile.

Matrix / Profile [info]

/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=85;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=80;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=3.0050390; R2=0.0082418; TEXT='-LogE';
/CUT_OFF: LEVEL=0; SCORE=861; N_SCORE=10.1; MODE=1; TEXT='R';
/CUT_OFF: LEVEL=-1; SCORE=425; N_SCORE=6.5; MODE=1; TEXT='RR';
/DEFAULT: M0=-43; D=-150; I=-150; B1=-1000; E1=-1000; MI=-380; MD=-380; IM=-380; DM=-380;

...

                A    C    D    E    F    G    H    I    K    L    M    N    P    Q    R    S    T    V    W    Y
/I:         B1=0; BI=-380; BD=-380;
/M: SY='A';  M=  87, -68, -72, -66, -82, -55, -74, -72, -68, -74, -68, -65, -72, -64, -72,  24, -55, -60, -83, -77;
/M: SY='V';  M= -67, -76, -91, -85, -53, -93, -84,  45, -83,  51, -40, -86, -86, -80, -83, -78, -63,  55, -83, -63;
/M: SY='G';  M= -56, -83, -72, -83, -85,  94, -78,  -6, -76, -85, -77, -58, -75, -74, -84, -57, -74, -80, -80, -82;
/M: SY='M';  M= -66, -77, -87, -82, -56, -85, -75,  52, -78,  29,  82, -78, -81, -73, -79,   6, -62,  22, -82, -62;
/M: SY='I';  M= -67, -78, -91, -86, -54, -94, -86,  67, -84,  37, -41, -85, -84, -81, -85, -78, -63,  50, -83, -63;
/M: SY='E';  M= -65,   6, -39, 101, -89, -81, -60, -90, -48, -82, -78, -62, -63,   2, -58, -31, -66, -82, -87, -79;
/M: SY='T';  M= -60, -69, -69, -71, -66, -78, -76, -53, -68,  13, -57, -60, -70, -71, -74, -49,  95,  13, -91, -69;
/M: SY='W';  M= -10, -80,  -6, -61, -16, -76, -67, -22,  38,  -6, -64,   6, -76, -58,  51, -62,  28, -67,  60, -63;
/M: SY='G';  M= -52, -76, -66, -73, -84,  72, -72, -87, -70, -87, -78, -54, -72, -65, -76,  62,   6, -80, -84, -78;
/M: SY='F';  M= -72, -78, -91, -87,  72, -91, -78,  44, -83,  21,  19, -84, -87, -84, -82, -79, -67,  26, -65,  -4;
/M: SY='P';  M=  46,  37, -77, -69, -78, -70, -80, -58, -72, -69, -65, -74,  73, -73, -79, -60,   0,  36, -88, -79;
/M: SY='A';  M=  71, -73, -71, -65, -83,  11, -72, -77, -14, -78, -70, -65,  13, -62,  19,   2, -60, -66, -82, -77;
/M: SY='C';  M=  40,  59, -81, -78, -70,  30, -80,   8, -77, -10,  21, -72, -80, -75, -80, -62, -64,  28, -85, -73;
/M: SY='I';  M= -68, -79, -91, -86, -55, -93, -85,  75, -83,  17,  43, -83, -82, -79, -84, -78, -63,  42, -82, -63;
/M: SY='E';  M=  19, -24,  28,  70, -85,   6, -66, -80, -58, -80, -76, -59, -68, -53, -66,   2,   2, -31, -88, -78;
/M: SY='A';  M=  80, -68, -74, -68, -76, -60, -75, -63, -70, -16, -63, -68, -74, -66, -74,   3,  -1,  -6, -83, -75;
/M: SY='A';  M=  88, -69, -73, -67, -82,   5, -75, -73, -69, -75, -68, -67, -73, -66, -74, -24, -59, -61, -82, -78;
/M: SY='D';  M= -74, -87, 113, -37, -94, -70, -59, -92, -61, -91, -90, -41, -73, -60, -70, -62, -63, -89,-110, -77;
/M: SY='A';  M=  83, -69, -74, -66, -78, -59, -73, -68, -65, -40,  22, -68, -73, -64,  -2, -24, -17, -58, -82, -74;
/M: SY='M';  M=  38, -73, -85, -75, -62, -73, -63, -47, -71, -42, 127, -74, -75, -64, -71, -67, -64, -51, -81, -61;
/M: SY='V';  M= -29,   9, -88, -81, -55, -88, -81, -34, -81,  54, -43, -84, -86, -79, -81, -74, -11,  62, -86, -65;
/M: SY='K';  M= -16, -82, -43, -48, -85, -74, -65, -84, 101, -84, -72, -54, -69, -47, -32, -62, -63, -79, -79, -72;
/M: SY='A';  M=  57, -71, -68, -66, -81,  11, -71, -76, -63, -78, -71, -59, -71, -62,   1,  49,  28, -65, -85, -75;
/M: SY='A';  M=  79, -70, -72, -68, -83,  25, -74, -76, -69, -77, -70, -64, -72, -65, -74,  17, -58, -64, -82, -78;
/M: SY='N';  M= -70, -83,   4, -11, -86, -68, -56, -84, -19, -86, -74,  80,  39,  31,  50, -58, -61, -84, -91, -76;
/M: SY='V';  M= -58, -73, -87, -82, -61, -87, -89,   8, -80, -47, -49, -81, -84, -81, -82,  -5, -56,  91, -93, -68;
/M: SY='T';  M= -64, -76,  34,  -1, -74, -77, -67, -63, -14, -17,  25, -23, -71,   0,  14, -55,  69,  -5, -90, -70;
/M: SY='L';  M= -73, -76, -91, -83, -47, -93, -76,  14, -84,  82, -35, -89, -89, -77, -82, -83, -69, -43, -77, -60;
/M: SY='V';  M= -36, -75, -87, -80, -58, -89, -83,  27, -75,  31, -45, -82, -84, -77,   3, -73, -22,  68, -86, -65;
/M: SY='G';  M= -60, -11,  20,   1, -77,  60, -69, -74, -64, -75,  27, -59, -75, -64,  11,  11, -65,   0, -82,  -5;
/M: SY='Y';  M= -27, -81, -74, -73, -44, -77,  20, -21, -50, -60,  31, -69, -82, -63,   5,  27, -62,  10, -55,  95;
/M: SY='E';  M= -69, -86, -10,  65, -82, -80,  42,  -8,  30, -75,  -6, -60, -70,  19,  39, -50, -67, -75, -85, -69;
/M: SY='K';  M= -69, -81, -71, -62,  -8, -79, -67,  -7,  48,   0,  39, -12,  28,  13,  16, -65,  13, -17, -80, -65;
/M: SY='I';  M=  42, -74, -82, -78, -64, -31, -84,  55, -76, -19, -52, -74, -78, -75, -80, -62,  10,  38, -84, -69;
/M: SY='G';  M= -59,  41,  -7, -22,   8,  70, -74,  -5, -72, -75,   2, -60, -76, -70, -43,  17, -67, -73, -80, -71;
/M: SY='S';  M= -56, -59,  -2, -65, -85,  48, -50, -85, -64, -81, -78, -56,  45, -53,  -3,  62, -16, -80, -86, -78;
/I:         I=-42; MI=0; MD=-106; IM=0; DM=-106;
/M: SY='G';  M=   2, -81, -71, -80, -88,  93, -77, -94, -75, -90, -80, -57, -74, -73, -82, -54, -73, -86, -80, -83;
/M: SY='K';  M= -72, -82, -69, -60, -14, -81, -62, -68,  65,  22, -59, -10, -79, -54,  50, -68, -67, -69, -71,  32;
/M: SY='C';  M=  -9,  82, -84, -81,  53, -82,  29, -49, -79, -21, -57, -76, -87, -80, -80, -26, -64,  47, -75,   2;
/M: SY='T';  M= -16, -72, -73, -73,  25, -79, -71, -17, -71,  13, -56, -65, -74, -72, -75, -54,  81, -20, -74,  29;
/M: SY='V';  M=  26, -73, -87, -79,  11, -81, -79, -16, -79,  31,  40, -81, -83, -76, -79, -69, -62,  57, -81, -61;
/M: SY='M';  M= -27, -76, -81, -79, -60, -83, -75,  51, -75,  -6,  80,   8, -79, -72, -77, -68,  19,  32, -85, -64;
/M: SY='V';  M= -64, -75, -90, -84, -56, -91, -85,  41, -82,  24,  31, -85, -84, -80, -82, -76, -61,  71, -86, -64;
/M: SY='R';  M=  -2,  12, -67, -10, -82,   1, -64, -83, -12, -79, -71, -61, -76, -18,  84, -59,  27, -75, -84, -72;
/M: SY='G';  M= -55, -83, -70, -82, -89,  97, -77, -97, -76, -92, -81, -56, -74, -73, -83, -55, -74, -90, -80, -84;
/M: SY='D';  M= -70, -86,  95,  30, -92, -30, -61, -89, -28, -87, -83, -47,  -9,  16, -65, -60, -10, -85, -99, -77;
/M: SY='V';  M= -61, -73, -88, -82, -57, -90, -86,   9, -80,   7, -47, -83, -84, -81, -82, -72, -10,  84, -87,  -6;
/M: SY='A';  M=  55, -73, -69, -68, -82,  45, -72, -78, -68, -45, -71, -60, -73,  -3, -73,  47, -57, -69, -83, -77;
/M: SY='A';  M=  57, -76,  50,  52, -86, -52, -65, -81, -59, -80, -75,  -1, -69, -55, -67, -19, -61, -71, -89, -78;
/M: SY='V';  M= -60,  37, -89, -84, -61, -90, -91,  20, -81, -46, -49, -83, -85, -84, -83, -73, -58,  89, -93, -68;
/M: SY='Q';  M=  -1, -82, -54,  35, -87, -71, -59, -83,  55, -81, -71,  34, -71,  61,  10, -57, -32, -79, -83, -73;
/M: SY='A';  M=  62, -72, -68,  -1, -74, -65, -70, -64, -65,   5,  -5, -24, -73,  27, -69,   2,  14, -36, -83, -72;
/M: SY='A';  M=  80, -68, -70, -65, -81, -55, -73, -73, -67, -76, -69, -63, -72, -62, -72,  48, -53, -61, -83, -76;
/M: SY='M';  M=  -8, -73, -83, -79, -60, -83, -78,  21, -76,  -4,  72, -75, -79, -74, -78, -66,  32,  57, -87, -65;
/M: SY='E';  M=  12, -80,  54,  57, -83, -73, -65,  -7, -17, -77, -73, -56, -69, -54, -10,  -7,  21, -69, -90, -75;
/M: SY='A';  M=  73, -69, -73, -32, -76, -63, -76, -58, -69, -65,   7, -68, -73, -67, -74, -17,  24,  23, -85, -74;
/M: SY='G';  M=  19, -79, -72, -79, -85,  86, -78, -81, -75, -83, -76, -60, -75, -73, -81, -55, -70,  -9, -81, -82;
/M: SY='R';  M=  26,  -5, -74, -68, -71, -73, -72,  17, -18, -27,  15, -65, -76, -13,  29,  18,  27,  12, -85, -69;
/M: SY='E';  M=  32, -78,  21,  58, -80, -69,  -3, -77, -56, -43,   2, -60, -69, -12,  -5,  21, -14, -71, -85, -24;
/M: SY='A';  M=  58, -73, -70, -29, -76, -65, -69,  -5, -62, -23,   9, -21, -73,  18,   5,  19,  12, -59, -83, -72;
/M: SY='A';  M=  79,  57, -78, -71, -77, -62, -79, -10, -72, -67, -64, -71, -76, -70, -77, -53, -59,  11, -85, -76;
/M: SY='G';  M= -25, -82, -21,  29, -86,  50, -64, -86,  12, -83, -11,  21, -72,  14,  21,   3, -65, -82, -84, -76;
/M: SY='R';  M=  28, -82, -27,  28, -84, -72,  11, -83, -19, -79, -70,  20, -75,  27,  70, -59, -65, -61, -85, -71;
/I:         I=-33; MD=-84;
/M: SY='V';  M= -39, -86, -88, -85,   1, -13, -87,  13, -16, -66, -66, -79, -88, -82, -23, -24,  20,  42, -88,  -4; D=-33;
/I:         I=-33; MI=0; MD=-84; IM=0; DM=-84;
/M: SY='G';  M= -11, -88, -11, -27, -92,  79, -80, -93, -79, -88,  25, -64, -80, -76, -86, -63, -78, -88, -88, -86; D=-33;
/I:         I=-33; DM=-84;
/M: SY='E';  M=   0, -81, -10,  53, -77, -23, -62, -71, -28,   1,  34, -63, -72,  40,  30, -19, -26, -70, -83, -70;
/M: SY='L';  M= -62, -71, -84, -79, -48,  -2, -75,  -7, -78,  64, -38, -80, -83, -75, -78, -73, -61,  55, -76,  -4;
/M: SY='V';  M= -61, -72, -74, -10, -57, -83,  -6,   2,  29,  33, -45, -30, -78, -66, -63, -68, -58,  69, -82, -62;
/M: SY='S';  M=  40, -71,  53,   4, -71, -59, -60, -73, -59, -74, -70, -51, -67, -55, -65,  55,  21, -66, -78,  28;
/M: SY='W';  M=   7, -37, -13,  -1, -64, -70,  12, -29,  -6, -13, -58, -35, -73, -60,   5,  28,   2,  43,  71, -61;
/M: SY='H';  M=  -8, -74, -67, -64,  -9, -73, 101, -55, -13,  21,  16, -59, -75, -59, -30,   6, -18,  15, -81,   1;
/M: SY='V';  M= -60,  37, -77,  16, -57, -87, -82,  64, -74, -20, -45, -77, -77, -72, -78, -70, -58,  68, -84, -64;
/M: SY='I';  M= -67, -78, -88, -85, -49, -92, -84,  94, -81,  31, -36, -80, -78, -77, -83, -77, -61,  -5, -76, -58;
/M: SY='P';  M=  44, -83, -69, -60, -85, -17, -72, -74, -65, -81, -70, -71, 109, -67, -75, -58, -60, -72, -80, -82;
/M: SY='R';  M= -68, -82, -60, -56, -72, -73, -52, -82, -31, -77, -66,  45, -77, -45, 102, -22, -63, -77, -75,  17;
/M: SY='P';  M= -12, -88, -72, -61, -79, -72, -74,   7, -67, -44, -64, -76, 114, -70, -78, -65, -60, -10, -81, -80;
/M: SY='H';  M= -69, -82, -23, -26, -69, -74, 135, -73, -61, -27,  -5, -49, -10,  -5, -57, -62, -67,  -9, -99, -44;
/M: SY='E';  M= -38, -79,  37,  69, -54, -14, -61, -73, -53, -76, -71,  -9,  39, -50, -31,  -4,  23, -10, -86, -73;
/M: SY='N';  M=  -7, -76,  61,  31, -83, -61,   8, -81, -52, -81, -73,  74, -69,  34, -59,  15, -54, -78, -92, -71;
/M: SY='V';  M= -61, -70, -84, -78, -51, -86, -77,  -6, -77,  51,  42, -80, -81, -74, -77, -71,  -7,  70, -82, -60;
/M: SY='W';  M= -65, -82,  11,  68, -66, -36, -63, -67, -18,  14, -12, -64, -69,  21,   6, -43, -66, -25,  93, -60;
/M: SY='W';  M=  40,  -2, -31, -29, -69,  -6,  -4, -57,  28, -74, -66, -32,  31, -55,  42, -56, -14, -69,  45,  25;
/M: SY='V';  M=  31,   9, -76, -68,   8, -74,  -2,  37, -65, -19, -50, -69, -76,  25,   4, -34, -24,  48, -78, -60;
/M: SY='L';  M= -42, -72, -87, -80,  26, -87, -72,  31, -79,  71,  42, -82, -83, -74, -77, -77, -64, -13, -70, -51;
/M: SY='P';  M= -43,   7,   4, -62,   8,  21, -70, -68, -67, -75, -69, -63,  90, -67, -75,  28, -25,   0, -80, -71;
/I:         E1=0; IE=-380; DE=-380;

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Post-processing [info]

COMPETES_HIT_WITH

PS51931

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_02 which contains 571'282 sequence entries.

Total number of hits	50 in 44 different sequences
Number of true positive hits	50 in 44 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	0
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	100.00 %

Comments [info]

Matrix type [info]	protein_domain
Scaling database [info]	reversed
Author [info]	CJA_Sigrist
Taxonomic range [info]	Prokaryotes (Bacteria)
Maximum number of repetitions [info]	2
Feature key [info]	DOMAIN
Feature description [info]	BMC
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

44 sequences

BMCH_HALO1  (D0LID5), BMCT1_HALO1 (D0LHE3), CCMK1_SYNY3 (P72760),

CCMK1_THEVB (Q8DKB3), CCMK2_SYNE7 (Q03511), CCMK2_SYNY3 (P72761), 
CCMK2_THEVB (Q8DKB2), CCMK3_HALP7 (K9Y7V9), CCMK3_SYNE7 (Q31RK3), 
CCMK3_SYNY3 (P73406), CCMK4_HALP7 (K9Y6N7), CCMK4_SYNE7 (Q31RK2), 
CCMK4_SYNY3 (P73407), CCMK_PICP2  (O30709), CCMO_SYNE7  (P46205), 
CCMO_SYNP6  (P23656), CCMO_SYNY3  (Q55121), CSOS1_PARMW (P0A329), 
CSOS1_PROMA (P0A328), CSOS1_PROMM (Q7V6F7), CSOS1_PROMP (Q7V2D1), 
CSOS1_SYNPW (P0A330), CSOSA_HALNC (P45689), CSOSA_HYDCU (Q31HD3), 
CSOSB_HALNC (P45690), CSOSB_HYDCU (Q31HD2), CSOSC_HALNC (P45688), 
CSOSC_HYDCU (Q31HD1), CSOSE_PROMM (Q7V6G4), EUTK_ECOLI  (P76540), 
EUTK_SALTY  (Q9ZFU8), EUTM_CLOD6  (Q187N0), EUTM_ECOL6  (P0ABF5), 
EUTM_ECOLI  (P0ABF4), EUTM_SALTY  (P41791), PDUA_CITFR  (P0DUM6), 
PDUA_SALTI  (P0A1C8), PDUA_SALTY  (P0A1C7), PDUJ_CITFR  (P0DUV5), 
PDUJ_SALTY  (H9L478), PDUK_CITFR  (B1VB70), PDUK_SALTY  (Q9XDN6), 
PDUT_CITFR  (P0DUV7), PDUT_SALTY  (Q9XDM8)

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Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

PDB
[Detailed view]

59 PDB

2A10; 2A18; 2A1B; 2EWH; 2G13; 3BN4; 3CIM; 3DN9; 3DNC; 3GV2; 3H8Y; 3I6P; 3MPW; 3MPY; 3N79; 3NGK; 3PAC; 3SSQ; 3SSR; 3SSS; 3VCD; 4AXJ; 4DDF; 4LIW; 4OX6; 4OX7; 4OX8; 4P7T; 4P7V; 4PPD; 4QIE; 4QIF; 4QIG; 4RBT; 4RBU; 4RBV; 5D6V; 5DIH; 5DII; 5DJB; 5V74; 5VGU; 6MZU; 6MZV; 6MZX; 6MZY; 6N06; 6N07; 6N09; 6N0F; 6N0G; 6NER; 6NLU; 6SCR; 7CKB; 7CKC; 8B0Y; 8B11; 8B12
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