PROSITE entry PS51930
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General information about the entry
Entry name [info] | BMC_2 |
Accession [info] | PS51930 |
Entry type [info] | MATRIX |
Date [info] |
07-OCT-2020 CREATED;
07-OCT-2020 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00876 |
Associated ProRule [info] | PRU01278 |
Name and characterization of the entry
Description [info] | Bacterial microcompartment (BMC) domain profile. |
Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=85; /DISJOINT: DEFINITION=PROTECT; N1=6; N2=80; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=3.0050390; R2=0.0082418; TEXT='-LogE'; /CUT_OFF: LEVEL=0; SCORE=861; N_SCORE=10.1; MODE=1; TEXT='R'; /CUT_OFF: LEVEL=-1; SCORE=425; N_SCORE=6.5; MODE=1; TEXT='RR'; /DEFAULT: M0=-43; D=-150; I=-150; B1=-1000; E1=-1000; MI=-380; MD=-380; IM=-380; DM=-380; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; BI=-380; BD=-380; /M: SY='A'; M= 87, -68, -72, -66, -82, -55, -74, -72, -68, -74, -68, -65, -72, -64, -72, 24, -55, -60, -83, -77; /M: SY='V'; M= -67, -76, -91, -85, -53, -93, -84, 45, -83, 51, -40, -86, -86, -80, -83, -78, -63, 55, -83, -63; /M: SY='G'; M= -56, -83, -72, -83, -85, 94, -78, -6, -76, -85, -77, -58, -75, -74, -84, -57, -74, -80, -80, -82; /M: SY='M'; M= -66, -77, -87, -82, -56, -85, -75, 52, -78, 29, 82, -78, -81, -73, -79, 6, -62, 22, -82, -62; /M: SY='I'; M= -67, -78, -91, -86, -54, -94, -86, 67, -84, 37, -41, -85, -84, -81, -85, -78, -63, 50, -83, -63; /M: SY='E'; M= -65, 6, -39, 101, -89, -81, -60, -90, -48, -82, -78, -62, -63, 2, -58, -31, -66, -82, -87, -79; /M: SY='T'; M= -60, -69, -69, -71, -66, -78, -76, -53, -68, 13, -57, -60, -70, -71, -74, -49, 95, 13, -91, -69; /M: SY='W'; M= -10, -80, -6, -61, -16, -76, -67, -22, 38, -6, -64, 6, -76, -58, 51, -62, 28, -67, 60, -63; /M: SY='G'; M= -52, -76, -66, -73, -84, 72, -72, -87, -70, -87, -78, -54, -72, -65, -76, 62, 6, -80, -84, -78; /M: SY='F'; M= -72, -78, -91, -87, 72, -91, -78, 44, -83, 21, 19, -84, -87, -84, -82, -79, -67, 26, -65, -4; /M: SY='P'; M= 46, 37, -77, -69, -78, -70, -80, -58, -72, -69, -65, -74, 73, -73, -79, -60, 0, 36, -88, -79; /M: SY='A'; M= 71, -73, -71, -65, -83, 11, -72, -77, -14, -78, -70, -65, 13, -62, 19, 2, -60, -66, -82, -77; /M: SY='C'; M= 40, 59, -81, -78, -70, 30, -80, 8, -77, -10, 21, -72, -80, -75, -80, -62, -64, 28, -85, -73; /M: SY='I'; M= -68, -79, -91, -86, -55, -93, -85, 75, -83, 17, 43, -83, -82, -79, -84, -78, -63, 42, -82, -63; /M: SY='E'; M= 19, -24, 28, 70, -85, 6, -66, -80, -58, -80, -76, -59, -68, -53, -66, 2, 2, -31, -88, -78; /M: SY='A'; M= 80, -68, -74, -68, -76, -60, -75, -63, -70, -16, -63, -68, -74, -66, -74, 3, -1, -6, -83, -75; /M: SY='A'; M= 88, -69, -73, -67, -82, 5, -75, -73, -69, -75, -68, -67, -73, -66, -74, -24, -59, -61, -82, -78; /M: SY='D'; M= -74, -87, 113, -37, -94, -70, -59, -92, -61, -91, -90, -41, -73, -60, -70, -62, -63, -89,-110, -77; /M: SY='A'; M= 83, -69, -74, -66, -78, -59, -73, -68, -65, -40, 22, -68, -73, -64, -2, -24, -17, -58, -82, -74; /M: SY='M'; M= 38, -73, -85, -75, -62, -73, -63, -47, -71, -42, 127, -74, -75, -64, -71, -67, -64, -51, -81, -61; /M: SY='V'; M= -29, 9, -88, -81, -55, -88, -81, -34, -81, 54, -43, -84, -86, -79, -81, -74, -11, 62, -86, -65; /M: SY='K'; M= -16, -82, -43, -48, -85, -74, -65, -84, 101, -84, -72, -54, -69, -47, -32, -62, -63, -79, -79, -72; /M: SY='A'; M= 57, -71, -68, -66, -81, 11, -71, -76, -63, -78, -71, -59, -71, -62, 1, 49, 28, -65, -85, -75; /M: SY='A'; M= 79, -70, -72, -68, -83, 25, -74, -76, -69, -77, -70, -64, -72, -65, -74, 17, -58, -64, -82, -78; /M: SY='N'; M= -70, -83, 4, -11, -86, -68, -56, -84, -19, -86, -74, 80, 39, 31, 50, -58, -61, -84, -91, -76; /M: SY='V'; M= -58, -73, -87, -82, -61, -87, -89, 8, -80, -47, -49, -81, -84, -81, -82, -5, -56, 91, -93, -68; /M: SY='T'; M= -64, -76, 34, -1, -74, -77, -67, -63, -14, -17, 25, -23, -71, 0, 14, -55, 69, -5, -90, -70; /M: SY='L'; M= -73, -76, -91, -83, -47, -93, -76, 14, -84, 82, -35, -89, -89, -77, -82, -83, -69, -43, -77, -60; /M: SY='V'; M= -36, -75, -87, -80, -58, -89, -83, 27, -75, 31, -45, -82, -84, -77, 3, -73, -22, 68, -86, -65; /M: SY='G'; M= -60, -11, 20, 1, -77, 60, -69, -74, -64, -75, 27, -59, -75, -64, 11, 11, -65, 0, -82, -5; /M: SY='Y'; M= -27, -81, -74, -73, -44, -77, 20, -21, -50, -60, 31, -69, -82, -63, 5, 27, -62, 10, -55, 95; /M: SY='E'; M= -69, -86, -10, 65, -82, -80, 42, -8, 30, -75, -6, -60, -70, 19, 39, -50, -67, -75, -85, -69; /M: SY='K'; M= -69, -81, -71, -62, -8, -79, -67, -7, 48, 0, 39, -12, 28, 13, 16, -65, 13, -17, -80, -65; /M: SY='I'; M= 42, -74, -82, -78, -64, -31, -84, 55, -76, -19, -52, -74, -78, -75, -80, -62, 10, 38, -84, -69; /M: SY='G'; M= -59, 41, -7, -22, 8, 70, -74, -5, -72, -75, 2, -60, -76, -70, -43, 17, -67, -73, -80, -71; /M: SY='S'; M= -56, -59, -2, -65, -85, 48, -50, -85, -64, -81, -78, -56, 45, -53, -3, 62, -16, -80, -86, -78; /I: I=-42; MI=0; MD=-106; IM=0; DM=-106; /M: SY='G'; M= 2, -81, -71, -80, -88, 93, -77, -94, -75, -90, -80, -57, -74, -73, -82, -54, -73, -86, -80, -83; /M: SY='K'; M= -72, -82, -69, -60, -14, -81, -62, -68, 65, 22, -59, -10, -79, -54, 50, -68, -67, -69, -71, 32; /M: SY='C'; M= -9, 82, -84, -81, 53, -82, 29, -49, -79, -21, -57, -76, -87, -80, -80, -26, -64, 47, -75, 2; /M: SY='T'; M= -16, -72, -73, -73, 25, -79, -71, -17, -71, 13, -56, -65, -74, -72, -75, -54, 81, -20, -74, 29; /M: SY='V'; M= 26, -73, -87, -79, 11, -81, -79, -16, -79, 31, 40, -81, -83, -76, -79, -69, -62, 57, -81, -61; /M: SY='M'; M= -27, -76, -81, -79, -60, -83, -75, 51, -75, -6, 80, 8, -79, -72, -77, -68, 19, 32, -85, -64; /M: SY='V'; M= -64, -75, -90, -84, -56, -91, -85, 41, -82, 24, 31, -85, -84, -80, -82, -76, -61, 71, -86, -64; /M: SY='R'; M= -2, 12, -67, -10, -82, 1, -64, -83, -12, -79, -71, -61, -76, -18, 84, -59, 27, -75, -84, -72; /M: SY='G'; M= -55, -83, -70, -82, -89, 97, -77, -97, -76, -92, -81, -56, -74, -73, -83, -55, -74, -90, -80, -84; /M: SY='D'; M= -70, -86, 95, 30, -92, -30, -61, -89, -28, -87, -83, -47, -9, 16, -65, -60, -10, -85, -99, -77; /M: SY='V'; M= -61, -73, -88, -82, -57, -90, -86, 9, -80, 7, -47, -83, -84, -81, -82, -72, -10, 84, -87, -6; /M: SY='A'; M= 55, -73, -69, -68, -82, 45, -72, -78, -68, -45, -71, -60, -73, -3, -73, 47, -57, -69, -83, -77; /M: SY='A'; M= 57, -76, 50, 52, -86, -52, -65, -81, -59, -80, -75, -1, -69, -55, -67, -19, -61, -71, -89, -78; /M: SY='V'; M= -60, 37, -89, -84, -61, -90, -91, 20, -81, -46, -49, -83, -85, -84, -83, -73, -58, 89, -93, -68; /M: SY='Q'; M= -1, -82, -54, 35, -87, -71, -59, -83, 55, -81, -71, 34, -71, 61, 10, -57, -32, -79, -83, -73; /M: SY='A'; M= 62, -72, -68, -1, -74, -65, -70, -64, -65, 5, -5, -24, -73, 27, -69, 2, 14, -36, -83, -72; /M: SY='A'; M= 80, -68, -70, -65, -81, -55, -73, -73, -67, -76, -69, -63, -72, -62, -72, 48, -53, -61, -83, -76; /M: SY='M'; M= -8, -73, -83, -79, -60, -83, -78, 21, -76, -4, 72, -75, -79, -74, -78, -66, 32, 57, -87, -65; /M: SY='E'; M= 12, -80, 54, 57, -83, -73, -65, -7, -17, -77, -73, -56, -69, -54, -10, -7, 21, -69, -90, -75; /M: SY='A'; M= 73, -69, -73, -32, -76, -63, -76, -58, -69, -65, 7, -68, -73, -67, -74, -17, 24, 23, -85, -74; /M: SY='G'; M= 19, -79, -72, -79, -85, 86, -78, -81, -75, -83, -76, -60, -75, -73, -81, -55, -70, -9, -81, -82; /M: SY='R'; M= 26, -5, -74, -68, -71, -73, -72, 17, -18, -27, 15, -65, -76, -13, 29, 18, 27, 12, -85, -69; /M: SY='E'; M= 32, -78, 21, 58, -80, -69, -3, -77, -56, -43, 2, -60, -69, -12, -5, 21, -14, -71, -85, -24; /M: SY='A'; M= 58, -73, -70, -29, -76, -65, -69, -5, -62, -23, 9, -21, -73, 18, 5, 19, 12, -59, -83, -72; /M: SY='A'; M= 79, 57, -78, -71, -77, -62, -79, -10, -72, -67, -64, -71, -76, -70, -77, -53, -59, 11, -85, -76; /M: SY='G'; M= -25, -82, -21, 29, -86, 50, -64, -86, 12, -83, -11, 21, -72, 14, 21, 3, -65, -82, -84, -76; /M: SY='R'; M= 28, -82, -27, 28, -84, -72, 11, -83, -19, -79, -70, 20, -75, 27, 70, -59, -65, -61, -85, -71; /I: I=-33; MD=-84; /M: SY='V'; M= -39, -86, -88, -85, 1, -13, -87, 13, -16, -66, -66, -79, -88, -82, -23, -24, 20, 42, -88, -4; D=-33; /I: I=-33; MI=0; MD=-84; IM=0; DM=-84; /M: SY='G'; M= -11, -88, -11, -27, -92, 79, -80, -93, -79, -88, 25, -64, -80, -76, -86, -63, -78, -88, -88, -86; D=-33; /I: I=-33; DM=-84; /M: SY='E'; M= 0, -81, -10, 53, -77, -23, -62, -71, -28, 1, 34, -63, -72, 40, 30, -19, -26, -70, -83, -70; /M: SY='L'; M= -62, -71, -84, -79, -48, -2, -75, -7, -78, 64, -38, -80, -83, -75, -78, -73, -61, 55, -76, -4; /M: SY='V'; M= -61, -72, -74, -10, -57, -83, -6, 2, 29, 33, -45, -30, -78, -66, -63, -68, -58, 69, -82, -62; /M: SY='S'; M= 40, -71, 53, 4, -71, -59, -60, -73, -59, -74, -70, -51, -67, -55, -65, 55, 21, -66, -78, 28; /M: SY='W'; M= 7, -37, -13, -1, -64, -70, 12, -29, -6, -13, -58, -35, -73, -60, 5, 28, 2, 43, 71, -61; /M: SY='H'; M= -8, -74, -67, -64, -9, -73, 101, -55, -13, 21, 16, -59, -75, -59, -30, 6, -18, 15, -81, 1; /M: SY='V'; M= -60, 37, -77, 16, -57, -87, -82, 64, -74, -20, -45, -77, -77, -72, -78, -70, -58, 68, -84, -64; /M: SY='I'; M= -67, -78, -88, -85, -49, -92, -84, 94, -81, 31, -36, -80, -78, -77, -83, -77, -61, -5, -76, -58; /M: SY='P'; M= 44, -83, -69, -60, -85, -17, -72, -74, -65, -81, -70, -71, 109, -67, -75, -58, -60, -72, -80, -82; /M: SY='R'; M= -68, -82, -60, -56, -72, -73, -52, -82, -31, -77, -66, 45, -77, -45, 102, -22, -63, -77, -75, 17; /M: SY='P'; M= -12, -88, -72, -61, -79, -72, -74, 7, -67, -44, -64, -76, 114, -70, -78, -65, -60, -10, -81, -80; /M: SY='H'; M= -69, -82, -23, -26, -69, -74, 135, -73, -61, -27, -5, -49, -10, -5, -57, -62, -67, -9, -99, -44; /M: SY='E'; M= -38, -79, 37, 69, -54, -14, -61, -73, -53, -76, -71, -9, 39, -50, -31, -4, 23, -10, -86, -73; /M: SY='N'; M= -7, -76, 61, 31, -83, -61, 8, -81, -52, -81, -73, 74, -69, 34, -59, 15, -54, -78, -92, -71; /M: SY='V'; M= -61, -70, -84, -78, -51, -86, -77, -6, -77, 51, 42, -80, -81, -74, -77, -71, -7, 70, -82, -60; /M: SY='W'; M= -65, -82, 11, 68, -66, -36, -63, -67, -18, 14, -12, -64, -69, 21, 6, -43, -66, -25, 93, -60; /M: SY='W'; M= 40, -2, -31, -29, -69, -6, -4, -57, 28, -74, -66, -32, 31, -55, 42, -56, -14, -69, 45, 25; /M: SY='V'; M= 31, 9, -76, -68, 8, -74, -2, 37, -65, -19, -50, -69, -76, 25, 4, -34, -24, 48, -78, -60; /M: SY='L'; M= -42, -72, -87, -80, 26, -87, -72, 31, -79, 71, 42, -82, -83, -74, -77, -77, -64, -13, -70, -51; /M: SY='P'; M= -43, 7, 4, -62, 8, 21, -70, -68, -67, -75, -69, -63, 90, -67, -75, 28, -25, 0, -80, -71; /I: E1=0; IE=-380; DE=-380;» more |
Post-processing [info]
COMPETES_HIT_WITH | PS51931 |
Numerical results [info]
Total number of hits | 50 in 44 different sequences |
Number of true positive hits | 50 in 44 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 0 |
Number of false negative sequences | 0 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 100.00 % |
Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
Taxonomic range [info] | Prokaryotes (Bacteria) |
Maximum number of repetitions [info] | 2 |
Matrix type [info] | protein_domain |
Scaling database [info] | reversed |
Author [info] | CJA_Sigrist |
Feature key [info] | DOMAIN |
Feature description [info] | BMC |
Version [info] | 1 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
44 sequences
BMCH_HALO1 (D0LID5), BMCT1_HALO1 (D0LHE3), CCMK1_SYNY3 (P72760), CCMK1_THEVB (Q8DKB3), CCMK2_SYNE7 (Q03511), CCMK2_SYNY3 (P72761), CCMK2_THEVB (Q8DKB2), CCMK3_HALP7 (K9Y7V9), CCMK3_SYNE7 (Q31RK3), CCMK3_SYNY3 (P73406), CCMK4_HALP7 (K9Y6N7), CCMK4_SYNE7 (Q31RK2), CCMK4_SYNY3 (P73407), CCMK_PICP2 (O30709), CCMO_SYNE7 (P46205), CCMO_SYNP6 (P23656), CCMO_SYNY3 (Q55121), CSOS1_PARMW (P0A329), CSOS1_PROMA (P0A328), CSOS1_PROMM (Q7V6F7), CSOS1_PROMP (Q7V2D1), CSOS1_SYNPW (P0A330), CSOSA_HALNC (P45689), CSOSA_HYDCU (Q31HD3), CSOSB_HALNC (P45690), CSOSB_HYDCU (Q31HD2), CSOSC_HALNC (P45688), CSOSC_HYDCU (Q31HD1), CSOSE_PROMM (Q7V6G4), EUTK_ECOLI (P76540), EUTK_SALTY (Q9ZFU8), EUTM_CLOD6 (Q187N0), EUTM_ECOL6 (P0ABF5), EUTM_ECOLI (P0ABF4), EUTM_SALTY (P41791), PDUA_CITFR (P0DUM6), PDUA_SALTI (P0A1C8), PDUA_SALTY (P0A1C7), PDUJ_CITFR (P0DUV5), PDUJ_SALTY (H9L478), PDUK_CITFR (B1VB70), PDUK_SALTY (Q9XDN6), PDUT_CITFR (P0DUV7), PDUT_SALTY (Q9XDM8)» more
|
PDB [Detailed view] |
60 PDB
2A10; 2A18; 2A1B; 2EWH; 2G13; 3BN4; 3CIM; 3DN9; 3DNC; 3GV2; 3H8Y; 3I6P; 3MPW; 3MPY; 3N79; 3NGK; 3PAC; 3SSQ; 3SSR; 3SSS; 3VCD; 4AXJ; 4DDF; 4LIW; 4OX6; 4OX7; 4OX8; 4P7T; 4P7V; 4PPD; 4QIE; 4QIF; 4QIG; 4RBT; 4RBU; 4RBV; 5D6V; 5DIH; 5DII; 5DJB; 5V74; 5VGU; 6MZU; 6MZV; 6MZX; 6MZY; 6N06; 6N07; 6N09; 6N0F; 6N0G; 6NER; 6NLU; 6SCR; 7CKB; 7CKC; 8B0Y; 8B11; 8B12; 8WXB » more |