PROSITE entry PS51931
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General information about the entry
| Entry name [info] | BMC_CP |
| Accession [info] | PS51931 |
| Entry type [info] | MATRIX |
| Date [info] |
07-OCT-2020 CREATED;
07-OCT-2020 DATA UPDATE; 27-MAR-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00876 |
| Associated ProRule [info] | PRU01279 |
Name and characterization of the entry
| Description [info] | Bacterial microcompartment (BMC) circularly permuted domain profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=107; /DISJOINT: DEFINITION=PROTECT; N1=1; N2=107; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.4706056; R2=0.0089325; TEXT='-LogE'; /CUT_OFF: LEVEL=0; SCORE=1235; N_SCORE=13.5; MODE=1; TEXT='R'; /CUT_OFF: LEVEL=-1; SCORE=452; N_SCORE=6.5; MODE=1; TEXT='R?'; /DEFAULT: M0=-35; D=-150; I=-150; B1=-1000; E1=-1000; MI=-380; MD=-380; IM=-380; DM=-380; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; BI=-380; BD=-380; /M: SY='E'; M= -15, -75, -1, 47, 9, -68, -53, -70, 15, -66, 31, 4, -66, 40, 39, 12, -3, -67, -70, 19; /M: SY='W'; M= 1, -72, -81, -75, 9, -79, -76, 52, -73, 31, 24, -75, 14, -71, -75, -67, -7, 38, 62, -53; /M: SY='R'; M= 17, -73, -69, -66, -56, 10, -62, 32, -7, 5, 17, 1, -73, -59, 38, -12, -58, 15, -69, 35; /M: SY='W'; M= 11, -70, -58, -8, -67, 25, 14, -61, -3, 4, -58, 36, -68, 7, -61, 16, 36, -7, 44, -63; /M: SY='D'; M= -13, 25, 57, 21, 0, -64, 18, -69, -57, -30, -64, 4, -68, -54, -63, 45, 22, -66, -73, 40; /M: SY='E'; M= 14, -77, 41, 43, -3, -71, -61, 13, -52, -13, -58, -58, 34, 32, 20, -58, -59, -7, -77, -63; /M: SY='I'; M= 5, -70, -73, -22, 44, -11, -72, 53, -69, 17, -45, -67, -73, -5, -72, -10, 24, 11, -69, -52; /M: SY='I'; M= -61, -78, -14, -61, -63, 38, -65, 53, -7, 18, -49, -9, 1, 52, 6, -60, -61, -48, -74, -63; /M: SY='D'; M= -15, 50, 64, -2, -10, 10, 48, -78, -52, -74, -69, -49, 14, -55, 37, -8, 7, -73, -85, -63; /I: I=-36; MD=-90; /M: SY='S'; M= 31, -86, -74, -73, -95, -74, -77, -90, -13, -92, -84, 28, -86, 14, -7, 34, -13, -83, -99, -87; D=-36; /I: I=-36; MD=-90; /M: SY='I'; M= -89, -98,-108,-100, 6,-111,-101, 27, -99, 15, -64,-102,-105, 0, -99, -96, -85, 26, -98, -78; D=-36; /I: I=-36; MI=0; MD=-90; IM=0; DM=-90; /M: SY='T'; M= 7, -70, -5, -56, 12, -69, 24, -11, -57, 1, -53, -55, -68, 63, -60, -49, 69, -55, -69, 34; /M: SY='H'; M= 27, -72, -65, 15, -56, -72, 46, 23, -60, 38, -45, -64, -72, 32, -11, -59, -5, -4, -73, 10; /M: SY='A'; M= 69, -66, 2, -63, -63, 18, -65, -54, -65, -21, 53, -61, -69, -62, -68, -49, -7, 11, -72, 18; /M: SY='Q'; M= 6, -74, -66, -55, -1, -70, 56, -3, -52, 8, 55, -58, -71, 69, 27, -9, -4, -14, -75, -54; /M: SY='Y'; M= -62, 24, -79, -77, 6, 7, -64, -5, -74, 47, -41, -74, -81, -71, -73, -68, -60, 46, -60, 65; /M: SY='I'; M= -22, 31, -77, -74, -54, -81, -77, 79, -9, -12, 30, -68, -72, -69, -72, -62, 37, 21, -78, -60; /M: SY='N'; M= 48, -71, -58, -59, -78, 27, -61, -74, -54, -77, -67, 53, 53, -56, 24, 21, -53, -68, -80, -72; /M: SY='R'; M= -62, -75, -57, -53, -74, -69, 45, -77, 1, -73, -63, 33, -70, -45, 91, 2, 40, -71, -81, -61; /I: I=-45; MI=0; MD=-115; IM=0; DM=-115; /M: SY='V'; M= 5, -69, -64, -62, -63, -69, -65, -45, -3, -24, 24, 40, 1, 9, 4, -54, 40, 51, 47, -62; /M: SY='G'; M= 11, -73, 45, -55, -78, 46, -61, -15, -8, -76, -69, 16, 7, -55, 19, 40, -54, -69, -81, -70; /M: SY='S'; M= -5, -72, -60, -7, -66, -63, -57, -13, -5, -5, -59, -54, -69, 38, 52, 66, -50, -62, -73, 8; /M: SY='G'; M= -16, -77, 29, 17, -65, 72, -60, -13, -62, -19, -64, -53, -69, 18, -67, -54, -64, -69, -68, 42; /M: SY='F'; M= 1, -70, -75, -68, 58, -71, -62, -47, -68, 45, 46, -69, 8, 8, -68, 27, -58, -51, -61, 21; /I: I=-28; MD=-70; /M: SY='M'; M= 24, -72, -66, 14, -62, -68, 29, -55, -61, 29, 73, -63, 11, -56, -2, 34, -56, -56, -79, -61; D=-28; /I: I=-28; MD=-70; /M: SY='K'; M= -64, -79, 8, -53, -74, -71, -64, 8, 64, -23, -62, 6, 61, -53, 9, 1, -57, -15, -79, -69; D=-28; /I: I=-28; MD=-70; /M: SY='H'; M= 1, -94, -74, 21, -96, -88, 27, -94, 18, -93, -84, -74, 7, -67, 20, -71, 23, -88,-100, -85; D=-28; /I: I=-28; MD=-70; /M: SY='L'; M= 7, -93,-105, -99, 23,-100, -95, 14, -99, 39, -61,-100,-102, -95, -98, -90, -84, -63, -89, -72; D=-28; /I: I=-28; MD=-70; /M: SY='G'; M= -77,-101, -82, -11,-104, 64, 31,-112, -4,-106, -95, -73, -90, -81, -86, -75, -90,-106,-100, -93; D=-28; /I: I=-28; MD=-70; /M: SY='M'; M= 0, -97,-109,-102, -78,-104,-101, 19,-101, 19, 22,-103,-104, -97,-102, -93, -85, 13,-104, -86; D=-28; /I: I=-28; MI=0; MD=-70; IM=0; DM=-70; /M: SY='P'; M= -29, -80, -69, -65, -64, -76, -67, -2, 0, 11, -56, 31, 59, 3, -6, -64, -15, 22, -78, 17; D=-28; /I: I=-28; DM=-70; /M: SY='P'; M= 6, -77, -1, 44, -74, -67, 34, -14, -52, -14, -61, -57, 58, 43, -1, 13, 2, -64, -80, -66; /M: SY='G'; M= 9, 32, -65, -73, -68, 80, 23, 18, -68, -70, -64, 4, -71, -65, -73, -52, -63, -64, -72, 19; /M: SY='D'; M= -63, -80, 58, 53, -79, -18, -53, -76, 20, -70, 44, -50, -65, 36, 52, -57, -61, -74, -81, -66; /M: SY='S'; M= 63, -65, -61, -58, -74, -53, 30, -69, -60, -71, -64, -53, 16, -55, -64, 66, 28, -59, -81, -67; /M: SY='C'; M= 9, 56, -81, -76, 23, -77, -71, 53, -74, 45, 54, -73, -77, -70, -75, -11, -59, -38, -71, -53; /M: SY='G'; M= 12, -73, -70, -72, 37, 75, -66, -64, -69, 18, -57, -59, -73, 6, -72, -55, -65, -64, -64, 12; /M: SY='W'; M= -66, -77, -85, -80, -42, -86, -75, 79, -76, 31, -38, -79, -78, -72, -77, -74, -62, 16, 82, 44; /M: SY='M'; M= -64, -72, -85, -79, -46, -86, -73, 66, -76, 55, 67, -78, -78, -71, -76, -74, -59, 20, -74, -55; /M: SY='E'; M= -54, 17, -48, 72, -72, -69, 23, -59, -52, -63, 23, -55, -63, 16, -58, 39, 20, 27, -83, -65; /M: SY='A'; M= 53, -67, 6, -65, -64, 22, -72, -4, -67, 1, -52, -62, -71, -66, -72, -52, 16, 47, -80, -66; /I: I=-42; MI=0; MD=-106; IM=0; DM=-106; /M: SY='A'; M= 38, 16, 28, -11, -86, -70, -73, -75, -67, -79, -74, -62, -76, 31, -72, 22, 24, -11, -93, -79; D=-42; /I: I=-42; DM=-106; /M: SY='P'; M= -62, 25, -66, -58, -83, 17, -68, -76, -60, -83, -71, -66, 113, -64, -1, 0, -58, -78, -79, -80; /M: SY='A'; M= 65, -69, 29, -59, -76, 37, -67, -65, -63, -68, 25, -57, 36, -61, -69, -11, -56, -11, -79, -71; /M: SY='G'; M= -14, -74, 29, -9, -64, 42, -66, 17, -66, 29, 29, -59, 34, -62, -71, 12, -58, -55, -77, -66; /M: SY='Y'; M= 37, -72, 24, 37, -56, -69, -60, -13, -60, -59, -57, -62, 14, -57, -65, -55, -5, 38, -66, 61; /M: SY='A'; M= 48, -69, -69, -63, -65, 20, -68, 32, -63, -16, 27, -61, -69, 42, -67, -51, 26, 14, -77, -64; /M: SY='M'; M= -15, -72, -65, 19, -49, -75, 30, 21, -63, -17, 76, 2, -72, -59, -65, -61, 7, 34, -66, 58; /M: SY='M'; M= -64, 31, -75, -70, 22, -19, -63, 33, -11, 24, 57, -67, -76, -62, 41, -66, -4, -13, -66, 31; /M: SY='A'; M= 74, -65, -72, -66, -62, -3, -69, -46, -66, -54, 42, -66, -70, -64, -69, -50, -54, 47, -74, 13; /M: SY='A'; M= 65, -65, -69, -66, -64, 5, -70, 24, -65, 1, 32, -61, -67, -63, -70, -47, 48, -46, -77, -65; /M: SY='D'; M= -67, -78, 111, -34, -86, -61, -51, -84, -54, -84, -81, 55, -68, -53, -62, -53, -55, -82,-102, -71; /M: SY='E'; M= 25, -72, -50, 74, -69, -71, -62, -3, -12, 3, -56, -61, -63, 13, -58, -54, 18, 12, -79, -67; /M: SY='A'; M= 96, -62, -68, -61, -76, -1, -70, -66, -63, -68, -62, -61, -66, -59, -68, -41, -53, -53, -75, -72; /M: SY='L'; M= -61, -71, -61, 50, -53, -79, -65, 4, -63, 60, 11, -67, -70, -57, -67, -8, 26, -3, -76, -60; /M: SY='K'; M= -63, -77, -55, -42, -79, -70, -58, -79, 107, -78, -66, -48, -63, -39, 15, -57, -58, -75, -72, -65; /M: SY='A'; M= 70, -65, -62, -56, -75, -5, 21, -69, -7, -70, -63, -53, -65, 20, -60, 44, 17, -59, -78, -67; /M: SY='A'; M= 82, -62, -66, -61, -71, -55, -70, -56, -62, -63, -59, -60, -66, -61, -67, 2, 42, 17, -79, -69; /I: I=-36; MI=0; MD=-90; IM=0; DM=-90; /M: SY='N'; M= -15, -73, 61, -54, -74, 47, 26, -68, -59, -23, 31, 66, -70, -58, -65, -52, -57, -16, -87, -67; /M: SY='V'; M= -54, -68, -79, -72, -55, -82, -79, 33, -71, -40, 33, -73, -76, 13, -72, -64, 3, 88, -84, -60; /M: SY='E'; M= -14, -76, 3, 63, -75, -69, 46, -70, 16, -24, 27, 6, -63, 58, -50, -53, 21, -68, -80, -63; /M: SY='V'; M= -59, 37, -82, -76, -53, -83, -79, 44, -74, 20, 23, -77, 29, -74, -77, -69, -56, 71, -81, -61; /I: I=-19; MD=-47; /M: SY='V'; M= 20, 25, -75, -5, -60, -10, -78, 34, -72, 0, -49, -71, -76, -70, -75, -7, -56, 63, -83, -66; D=-19; /I: I=-19; MD=-47; /M: SY='E'; M= -19, -77, 54, 54, -66, -70, -56, -5, -54, -70, -66, 22, -66, 11, -61, -53, 41, -65, -76, 42; D=-19; /I: I=-19; MD=-47; /M: SY='Y'; M= -71, -83, -88, -88, 38, 12, -75, 34, -83, -12, -55, -81, -88, -82, -84, -76, -70, 36, -66, 56; D=-19; /I: I=-19; MI=0; MD=-47; IM=0; DM=-47; /M: SY='H'; M= 1,-101, 29, -78, -3, 11, 42,-101, -81, -97, -91, -76, 13, -82, -4, -79, -86, -97,-102, -82; D=-19; /I: I=-19; DM=-47; /M: SY='P'; M= -76, -96, -83, -86, -98, 41, -89, -89, -84, -96, -88, 1, 53, -86, -93, -71, 26, -21,-101, -96; D=-19; /I: I=-19; DM=-47; /M: SY='S'; M= -63, -78, -68, -63, -3, -72, -67, -72, 34, -26, -68, -61, 35, -61, -5, 45, 42, -70, -77, 17; D=-19; /I: I=-19; DM=-47; /M: SY='C'; M= 5, 58, -73, -71, -77, 16, -74, -69, -11, -27, 18, -64, 33, -68, -73, 40, -5, -9, -88, -76; D=-19; /I: I=-19; DM=-47; /M: SY='E'; M= -68, -84, -5, 37, 19, 15, -69, 12, -69, -22, -64, -69, 33, -66, -75, -66, 4, -17, -72, 33; D=-19; /I: I=-19; DM=-47; /M: SY='R'; M= 27, -72, -62, -57, -77, 44, -61, -75, -47, -73, -65, -52, -67, 39, 59, 11, 39, -67, -77, -68; /M: SY='N'; M= 39, -70, -53, -59, -4, 43, 26, -75, -56, -74, -65, 73, -69, 38, -61, -4, -55, -70, -79, -65; /M: SY='F'; M= -66, -75, -59, 52, 77, -76, 59, -7, -61, -52, 26, -62, -71, -57, -63, -12, -6, -59, -56, 46; /M: SY='G'; M= 6, -72, -67, -73, -72, 81, -72, 15, -69, -67, -62, -55, -69, -66, -75, 3, -2, 15, -76, -71; /I: I=-45; MI=0; MD=-115; IM=0; DM=-115; /M: SY='R'; M= 11, 17, -73, -68, 8, -18, -65, 15, -58, 39, -46, -66, -76, -62, 44, -3, -1, -3, -70, 11; /M: SY='L'; M= 11, -70, -81, -76, -47, -17, -73, 49, -76, 69, -35, -77, -78, -70, -76, -69, -60, -4, -73, -57; /M: SY='Y'; M= 25, -70, -65, 33, 33, -73, -64, 21, -63, -17, 33, -66, -70, -61, -67, -57, 31, 26, -66, 34; /M: SY='I'; M= -66, -72, -85, -80, 5, -88, -75, 71, -78, 65, -32, -80, -80, -74, -78, -75, -61, 0, -71, -52; /M: SY='H'; M= 3, -71, -62, -62, 30, 32, 69, -69, -3, -66, -61, -52, -68, -58, -61, 40, 37, -65, -67, 40; /M: SY='G'; M= -7, -75, -63, -71, -80, 93, 53, -87, -67, -82, -71, -49, -68, -63, -72, 1, -64, -80, -77, -70; /M: SY='D'; M= 13, -74, 61, 34, -2, -62, -59, -75, 18, -75, -70, -49, 37, -51, -57, 42, -3, -70, -81, -66; /I: I=-28; MD=-70; /M: SY='D'; M= -73, -89, 56, 40, -96, -78, -69, -93, -65, -92, -87, 14, -78, 7, -73, 17, 18, -88,-104, -84; D=-28; /I: I=-28; MD=-70; /M: SY='P'; M= -28,-104, -91, -80, -98, 2, -89, -85, -80, -23, -82, -87, 53, 36, -8, -82, -85, -15,-101, -94; D=-28; /I: I=-28; MI=0; MD=-70; IM=0; DM=-70; /M: SY='A'; M= 36, -85, 23, -13, -92, 7, -78, -15, -73, -85, -80, -66, -81, 6, -79, 32, -67, -76, -95, -84; D=-28; /I: I=-28; DM=-70; /M: SY='E'; M= 28, -87, 44, 55, -95, -78, -73, -91, -66, -89, -85, -65, -76, -62, -75, -11, 0, -82, -99, -86; D=-28; /I: I=-28; DM=-70; /M: SY='V'; M= 32, 24, -92, -87, -76, -18, -93, -50, -86, -23, -64, -86, -90, -86, -89, -72, -68, 61, -98, -81; D=-28; /I: I=-28; DM=-70; /M: SY='R'; M= 2, -72, -63, -54, -68, -68, -60, -59, 31, 2, -56, -56, -70, 21, 64, 26, 23, 9, -77, -63; /M: SY='A'; M= 67, -70, -61, -10, -78, 20, 30, -74, -50, -72, -63, -56, -67, 39, 41, -4, -57, -64, -77, -66; /M: SY='A'; M= 88, -63, -66, -61, -76, 17, -68, -68, -63, -70, -63, -58, -66, -59, -67, 23, -51, -56, -76, -71; /M: SY='C'; M= 38, 60, -75, -72, -62, 28, -75, 4, -68, 7, -51, -67, -75, -68, -7, -57, -57, 52, -80, -66; /M: SY='D'; M= -15, -77, 63, 56, -78, -68, -56, -17, 23, -72, -68, 8, -65, -45, 37, -8, -57, -15, -84, -68; /M: SY='A'; M= 75, -66, -63, 17, -72, -59, -67, -3, -57, -61, -57, -62, -67, 28, -8, -47, -2, 19, -77, -68; /M: SY='A'; M= 83, -64, -72, -65, -2, -12, -70, 18, -66, -56, 32, -65, -69, -63, -70, -48, -54, -3, -73, -63; /M: SY='L'; M= -18, 39, -82, -75, -48, -82, -70, 33, -71, 61, 54, -76, -79, -69, -8, -70, -60, 24, -76, -57; /M: SY='D'; M= 15, -74, 81, 20, -79, -62, -55, -76, 0, -75, 10, 17, -66, -50, 20, 14, -5, -71, -88, -68; /M: SY='Q'; M= 42, -72, -57, -1, 0, -6, 34, 13, -7, -64, -59, 35, -68, 50, -57, 12, -55, -59, -72, 10; /M: SY='I'; M= -19, -72, -80, -77, 13, -26, -77, 53, -75, 43, -42, -72, -77, -74, -78, -64, 39, 12, -75, -57; /M: SY='E'; M= -16, -77, 6, 47, -79, 12, 33, -76, -48, -75, -68, -54, -68, 10, 46, 26, 7, -19, -84, -68; /M: SY='N'; M= -60, -77, 31, 12, -81, 22, -61, -73, 21, -79, -72, 51, -72, -55, 6, 28, -57, 6, -88, -74; /I: I=-28; MD=-70; /M: SY='R'; M= -8, -81, 22, -7, -75, 12, -71, -12, -4, -24, 19, -64, -77, -62, 39, -64, 4, 18, -87, -72; D=-28; /I: I=-28; MD=-70; /M: SY='A'; M= 50, -78, -67, 33, 7, 19, -73, -69, -67, -26, -67, -69, 2, 6, -72, -59, -65, -5, -80, -71; D=-28; /I: I=-28; MD=-70; /M: SY='Q'; M= 11, -80, -3, 20, -79, 26, 23, -76, -12, -1, -67, -60, -73, 31, -66, 15, 0, -72, -86, -72; D=-28; /I: I=-28; MD=-70; /M: SY='D'; M= 2, -88, 52, 28, -94, -17, -71, -90, -16, -90, -84, 2, 3, -64, -8, -64, 18, -84, -99, -84; D=-28; /I: I=-28; MD=-70; /M: SY='P'; M= 6, -86, -83, -75, 0, -18, -81, 0, -13, -7, -65, -78, 27, 14, -7, -17, -70, 12, -86, -73; D=-28; /I: I=-28; MD=-70; /M: SY='L'; M= -11, -86, -6, -85, -62, -16, -81, -55, -88, 50, -55, -87, -95, -83, -88, -82, -76, 8, -84, 19; D=-28; /I: I=-28; MD=-70; /M: SY='R'; M= 1, -89, -67, 19, -93, -19, -70, -94, -7, -92, -83, 32, -83, -60, 52, 8, -71, -87, -95, -84; D=-28; /I: I=-28; MI=0; MD=-70; IM=0; DM=-70; /M: SY='F'; M= 8, -82, -80, -74, 61, -76, 25, -64, -74, -23, 20, -75, 56, -73, -76, -11, -67, -67, 55, 40; /I: I=-28; E1=0; MI=0; IE=0; DE=-70;» more |
Post-processing [info]
| COMPETES_HIT_WITH | PS51930 |
Numerical results [info]
| Total number of hits | 37 in 23 different sequences |
| Number of true positive hits | 37 in 23 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 1 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 97.37 % |
Comments [info]
| Matrix type [info] | protein_domain |
| Scaling database [info] | reversed |
| Author [info] | CJA_Sigrist |
| Taxonomic range [info] | Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 2 |
| Feature key [info] | DOMAIN |
| Feature description [info] | BMC circularly permuted |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
23 sequences
BMCT2_HALO1 (D0LID6), BMCT3_HALO1 (D0LV02), CCMP_SYNE7 (Q31QW7), CCMP_SYNY3 (Q55550), CSOSD_HALNC (D0KZ73), CSOSD_HYDCU (Q31HC6), CSOSD_PROMP (Q7V2D3), EUTL_CLOPE (Q8XLZ0), EUTL_ECOLI (P76541), EUTL_SALTI (P0A1D0), EUTL_SALTY (P0A1C9), EUTS_CLOD6 (Q187M0), EUTS_ECOL6 (P63747), EUTS_ECOLI (P63746), EUTS_SALTI (Q8Z4T3), EUTS_SALTY (Q9ZFV7), EUTS_SHIFL (P63748), PDUB_CITFR (B1VB63), PDUB_LIMRD (A5VMB3), PDUB_SALTY (P37449), PDUU_CITFR (P0DUV8), PDUU_SALTI (P0A1D2), PDUU_SALTY (P0A1D1)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
1 sequence
CUTR_STRIS (A0A0E2IV13) |
| PDB [Detailed view] |
40 PDB
3CGI; 3F56; 3FCH; 3GFH; 3I82; 3I87; 3I96; 3IA0; 3MPV; 4AXI; 4EDI; 4FAY; 4FDZ; 4HT5; 4HT7; 4TLH; 4TM6; 4TME; 4U6I; 5LSR; 5LT5; 5V74; 5V75; 5V76; 6ARC; 6ARD; 6MZU; 6MZV; 6MZX; 6MZY; 6N07; 6N09; 6N0F; 6N0G; 6XPH; 6XPI; 6XPJ; 6XPK; 6XPL; 7DHQ » more |