 |
|
| Entry: PS51937 |
General information about the entry
| Entry name [info] | HNF_P1 |
| Accession [info] | PS51937 |
| Entry type [info] | MATRIX |
| Date [info] |
02-DEC-2020 CREATED;
02-DEC-2020 DATA UPDATE; 22-FEB-2023 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC51937 |
| Associated ProRule [info] | PRU01286 |
Name and characterization of the entry
| Description [info] | HNF-1 dimerization (HNF-p1) domain profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=32; /DISJOINT: DEFINITION=PROTECT; N1=4; N2=29; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.6413412; R2=0.0088844; TEXT='-LogE'; /CUT_OFF: LEVEL=0; SCORE=1054; N_SCORE=12.0; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=435; N_SCORE=6.5; MODE=1; TEXT='?'; /DEFAULT: M0=-39; D=-100; I=-100; B1=-1000; E1=-1000; MI=-255; MD=-255; IM=-255; DM=-255; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; BI=-255; BD=-255; /M: SY='M'; M=-45,-75, 12, -1,-80,-27,-52,-69,-40,-44, 87,-36,-26,-57, 14,-22,-16,-34,-95,-76; /M: SY='M'; M= -8,-83,-36, 39,-78,-50,-68,-48,-67,-67, 51,-73, 23,-56,-21, 1,-17, 31,-44,-76; /M: SY='P'; M=-28,-70,-71,-69,-81,-14,-72,-30,-46,-26, 3, 2, 62,-66, -8, 53,-19,-48,-89,-78; /M: SY='R'; M=-62,-85,-54,-16,-42,-75,-45,-34, 35, 20, 5,-67,-39, 19, 65,-40,-69,-69,-81,-68; /M: SY='F'; M=-77,-78,-90,-85, 77,-90,-26,-47,-83, 48, 0,-85,-48,-83,-80,-81,-71,-13,-59, 33; /M: SY='T'; M=-57,-69,-64,-67,-76,-56,-73,-68,-38,-73,-69,-23,-68,-66,-71, 32, 97,-39,-94,-73; /M: SY='I'; M= 19,-63,-46,-28,-66,-61,-12, 50,-73,-39,-36,-51, -1, -9,-55, -9,-36, 42,-72,-31; /M: SY='E'; M=-55,-82,-55, 76,-68,-85,-66,-42,-55, 45,-56,-47,-72, 10,-66,-52,-37,-64,-83,-70; /M: SY='Q'; M=-66,-91,-61,-41,-96,-74,-54,-83,-14,-78,-65,-57,-73,123,-46,-56,-69,-84,-79,-68; /M: SY='I'; M=-57,-47,-71, 22,-66,-86,-20, 54,-21, 10,-21,-49,-77, 41, 7,-68,-26, 5,-82,-66; /M: SY='E'; M=-68,-88, 47, 80,-86,-54,-41,-87,-23,-66,-38,-57,-67, 49,-58,-62,-67,-83, 3,-25; /M: SY='L'; M=-73,-76,-91,-83,-47,-93,-75,-18,-84, 84,-25,-90,-90,-77,-81,-84,-69,-45,-77,-60; /M: SY='L'; M=-70,-78,-91,-85,-51,-94,-82, 56,-84, 61,-38,-87,-86,-79,-84,-81,-66, 21,-80,-62; /M: SY='W'; M=-28,-87,-62,-47,-76,-29,-64,-80,-25,-59,-70, 0,-78, 71, 59, 0,-62,-46, 95,-61; /M: SY='R'; M= 51,-79,-41,-25,-83,-68,-50,-81, 1,-79,-70,-63,-76,-19, 76, -2,-63,-72,-83,-73; /M: SY='L'; M=-73,-75,-91,-83,-47,-92,-75,-38,-84, 84,-35,-90,-91,-77,-81,-83,-69,-23,-78,-60; /M: SY='R'; M=-71,-79,-77,-66,-19,-85,-27,-40,-14, 55, -8,-72,-83,-33, 75,-72,-68,-48,-76,-60; /M: SY='D'; M=-52,-25, 38, 28,-78, 14, -8,-63,-32,-11,-55, 14,-72, 19, 36, 9,-25,-45,-61,-70; /M: SY='S'; M=-48,-67,-60,-62,-76,-58,-66,-73,-61,-77,-71,-49,-66,-56,-67, 89, 62,-65,-88,-70; /M: SY='G'; M=-53,-81,-69,-80,-87, 98,-75,-95,-73,-90,-79,-54,-73,-71,-41,-54,-72,-88,-78,-82; /M: SY='M'; M=-43,-71,-84,-78,-47,-83,-70, 60,-74, 49, 87,-77,-77,-69,-74,-73,-59, 21,-74,-54; /M: SY='T'; M=-41,-63,-55,-42,-71,-48,-63,-66,-54,-70,-65, -5,-61,-55,-55, 75, 87,-58,-85,-66; /M: SY='K'; M=-21,-78,-58,-46,-76,-49,-58,-75, 82,-29,-63,-22, 20, 21, 51,-15,-49,-72,-40,-65; /M: SY='D'; M= 1,-79, 68, 62,-83,-67,-15,-78,-47,-67,-71,-26, 43, 31,-24,-40, -6,-57,-85,-71; /M: SY='Q'; M= 21,-73, 5, 42,-71,-41,-61,-18,-53,-18,-55,-34,-67, 74,-57,-53, -3, 38,-79,-65; /M: SY='L'; M=-62,-71,-84,-78,-46,-86,-76, 59,-77, 60, 11,-79,-79,-73,-77,-51,-58, 44,-75,-56; /M: SY='I'; M= 0,-70,-82,-76,-44,-82,-78, 65,-47, 38,-12,-76,-76,-72,-75,-55,-31, 54,-77,-58; /M: SY='H'; M=-26,-60,-34, 42,-78,-69, 90,-65, 12,-56,-38,-50,-65, 87, 11,-30,-62,-76,-80,-56; /M: SY='A'; M= 91,-63,-69,-62,-24,-16,-70, -2,-64,-62,-12,-63,-67,-61,-51,-31,-48,-33,-25,-67; /M: SY='L'; M=-58,-38,-83,-75, 47,-83,-65,-15,-74, 69, 48,-79,-21,-41,-49,-74,-63, -9,-62, 21; /M: SY='D'; M=-33,-38, 66, 56,-82, 40, -8,-83,-23,-79,-67,-12,-39,-21, 11,-30,-10,-77,-84,-71; /M: SY='E'; M= 1,-72, 56, 56,-77,-64,-58,-58,-47,-73,-33,-34,-37, -9,-16, 33, 50,-66,-23,-68; /I: E1=0; IE=-255; DE=-255;» more |
Numerical results [info]
| Total number of hits | 18 in 18 different sequences |
| Number of true positive hits | 18 in 18 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Matrix type [info] | protein_domain |
| Scaling database [info] | reversed |
| Author [info] | CJA_Sigrist |
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 1 |
| Feature key [info] | DOMAIN |
| Feature description [info] | HNF-p1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
18 sequences
HMBX1_CAEEL (Q9TYT0 ), HMBX1_HUMAN (Q6NT76 ), HMBX1_MOUSE (Q8BJA3 ), HN1BA_DANRE (A1L1N5 ), HN1BB_DANRE (Q8UW00 ), HNF1A_CHICK (Q90867 ), HNF1A_HUMAN (P20823 ), HNF1A_MOUSE (P22361 ), HNF1A_RAT (P15257 ), HNF1A_SALSA (Q91474 ), HNF1B_HUMAN (P35680 ), HNF1B_MOUSE (P27889 ), HNF1B_PIG (Q03365 ), HNF1B_PONAB (Q5RER5 ), HNF1B_RAT (P23899 ), HNF1B_XENLA (Q91910 ), HNFAA_XENLA (Q05041 ), HNFAB_XENLA (Q91739 )» more
|
| PDB [Detailed view] |
6 PDB
1F93; 1G2Y; 1G2Z; 1G39; 1JB6; 2GYP |
View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission