PROSITE logo

PROSITE entry PS52003


View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission
General information about the entry

Entry name [info] OCA
Accession [info] PS52003
Entry type [info] MATRIX
Date [info] 12-OCT-2022 CREATED;
12-OCT-2022 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC52003
Associated ProRule [info] PRU01347

Name and characterization of the entry

Description [info] OCA domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=23;
/DISJOINT: DEFINITION=PROTECT; N1=3; N2=21;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.9030631; R2=0.0206927; TEXT='-LogE';
/CUT_OFF: LEVEL=0; SCORE=343; N_SCORE=9.0; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=223; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-11; D=-20; I=-20; B1=-100; E1=-100; MI=-105; MD=-105; IM=-105; DM=-105;
...
                A   B   C   D   E   F   G   H   I   K   L   M   N   P   Q   R   S   T   V   W   Y   Z
/I:         B1=0; BI=-105; BD=-105;
/M: SY='S';  M= -1,-11,-14,-13,  0,-22,-17,-12,-20,  0,-21,-17, -9, -3, -2,  0,  1, -3,-18,-28,-19, -2;
/M: SY='G';  M= -7,-10,-13,-13,-11,-24,  3,-13,-26, -3,-24,-20,-10,-20, -6, -4, -6,-14,-21,-26,-18,-11;
/M: SY='H';  M= -7,-14,-10,-18,-10,-16,-21,  1,-17, -2,-19,-17,-10,-13, -6, -1, -7,-11,-15,-22, -4,-10;
/M: SY='Y';  M=-13,-30,-16,-32,-24, 23,-30, -1,  3,-23, -1, -2,-25,-30,-22,-23,-19,-15,  1,  4, 36,-23;
/M: SY='Q';  M=-10, -7,-25, -9,  6,-23,-22, -3,-18,  6,-11,  2, -6,-14, 30,  2, -4, -8,-11,-23,-18, 12;
/I:         I=-6; MI=0; MD=-32; IM=0; DM=-32;
/M: SY='G';  M=  3,-15,-10,-17,-21,-25, 26,-21,-25,-18,-27,-21,-14,-20,-18,-18, -2,-10,-17,-29,-25,-20;
/M: SY='V';  M= -4,-27,-13,-27,-27, -5,-30,-27, 24,-21,  8, 11,-27,-23,-19,-29,-19, -3, 30,-27, -8,-20;
/M: SY='R';  M=-10, -7,-36,-15,  2,-27,-19,  9,-29, 16,-22,-18,  2,-18, 14, 42, -6,-10,-28,-28,-15,  3;
/M: SY='V';  M= -3,-21,-14,-24,-21,-15,-27,-24, 15, -8,  0,  3,-19,-18,-14,-20,-14,  1, 25,-31,-13,-14;
/M: SY='K';  M=-10, -3,-33,-13,  7,-30,-20, -7,-30, 41,-27,-20,  0,-13, 10, 32, -3,-10,-23,-30,-20,  7;
/M: SY='N';  M=-16,  8,-28,  0, -2,-20,-18,  5,-18, -5,-21,  2, 23,-22,  2, -6, -2, -7,-18,-32,-14, -3;
/M: SY='P';  M= -3,-13,-19,-13, -9,-29,-17,-19,-20, -9,-22,-20, -8, 31, -9,-15,  5, 17,-12,-35,-25, -9;
/M: SY='V';  M= -1,-30,-10,-30,-30, -9,-31,-30, 31,-21, 11, 10,-30,-21,-21,-30,-20, -1, 39,-29,-10,-21;
/M: SY='K';  M=-10, -3,-33,-13,  7,-30,-20, -7,-30, 42,-27,-20,  0,-13, 10, 31, -3,-10,-23,-30,-20,  7;
/M: SY='E';  M=-10, 17,-38, 30, 38,-32,-16, -4,-29,  3,-32,-22,  2,-13, 12, -6,  1, -9,-28,-36,-23, 28;
/M: SY='L';  M=-19,-39,-11,-39,-29,  0,-39,-29, 19,-29, 38, 25,-38,-30,-18,-20,-29,-10, 10,-20,-10,-29;
/M: SY='L';  M=-18,-38,-10,-38,-30,  0,-40,-30, 25,-30, 35, 18,-38,-30,-22,-22,-28,-10, 15,-20,-10,-30;
/M: SY='R';  M=-10,-19,-25,-23, -8,-16,-26,-14, -9,  2,  1, 10,-14,-22,  1, 11,-14,-10, -9,-25,-15, -8;
/M: SY='Q';  M=-14, -4,-28,-10,  0,-19,-21,  4,-17,  0,-14,  6,  7,-20, 12,  3, -6, -9,-16,-27,-13,  1;
/M: SY='K';  M=-10,-13,-24,-20, -7,-16,-27,-15, -5, 14,-10, -9,-12,-20, -5,  8, -9,-10, -4,-25,-14, -7;
/M: SY='R';  M=-11, -7,-37,-16,  3,-28,-20,  8,-30, 19,-22,-18,  1,-18, 15, 45, -8,-11,-28,-28,-16,  4;
/M: SY='Q';  M= -5,-14,-17,-14, -9,-16,-15,-14, -5,-10, -7, -4,-10,-18,  2,-10,  2, -3, -5,-25,-17, -6;
/M: SY='A';  M=  5,-12,-15,-14, -8,-20,-11,-15,-10, -5,-13, -7,-10,-16, -2, -6,  1, -4, -6,-28,-18, -7;
/I:         E1=0; IE=-105; DE=-105;
» more

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_03 which contains 571'609 sequence entries.


Total number of hits 11 in 11 different sequences
Number of true positive hits 11 in 11 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Feature key [info] DOMAIN
Feature description [info] OCA
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
11 sequences

IKBZ_BOVIN  (Q9BE45), IKBZ_HUMAN  (Q9BYH8), IKBZ_MOUSE  (Q9EST8), 
OBF1_BOVIN  (Q2KJA4), OBF1_HUMAN  (Q16633), OBF1_MOUSE  (Q64693), 
OCAT1_DANRE (A0PJS5), OCAT1_HUMAN (Q8IXP5), OCAT1_MOUSE (Q9D8Q6), 
OCAT2_HUMAN (A8K830), OCAT2_MOUSE (F8VPY8)
» more

PDB
[Detailed view]
1 PDB

1CQT