 |
|
| Entry: PS52003 |
General information about the entry
| Entry name [info] | OCA |
| Accession [info] | PS52003 |
| Entry type [info] | MATRIX |
| Date [info] |
12-OCT-2022 CREATED;
12-OCT-2022 DATA UPDATE; 22-FEB-2023 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC52003 |
| Associated ProRule [info] | PRU01347 |
Name and characterization of the entry
| Description [info] | OCA domain profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=23; /DISJOINT: DEFINITION=PROTECT; N1=3; N2=21; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.9030631; R2=0.0206927; TEXT='-LogE'; /CUT_OFF: LEVEL=0; SCORE=343; N_SCORE=9.0; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=223; N_SCORE=6.5; MODE=1; TEXT='?'; /DEFAULT: M0=-11; D=-20; I=-20; B1=-100; E1=-100; MI=-105; MD=-105; IM=-105; DM=-105; ... A B C D E F G H I K L M N P Q R S T V W Y Z /I: B1=0; BI=-105; BD=-105; /M: SY='S'; M= -1,-11,-14,-13, 0,-22,-17,-12,-20, 0,-21,-17, -9, -3, -2, 0, 1, -3,-18,-28,-19, -2; /M: SY='G'; M= -7,-10,-13,-13,-11,-24, 3,-13,-26, -3,-24,-20,-10,-20, -6, -4, -6,-14,-21,-26,-18,-11; /M: SY='H'; M= -7,-14,-10,-18,-10,-16,-21, 1,-17, -2,-19,-17,-10,-13, -6, -1, -7,-11,-15,-22, -4,-10; /M: SY='Y'; M=-13,-30,-16,-32,-24, 23,-30, -1, 3,-23, -1, -2,-25,-30,-22,-23,-19,-15, 1, 4, 36,-23; /M: SY='Q'; M=-10, -7,-25, -9, 6,-23,-22, -3,-18, 6,-11, 2, -6,-14, 30, 2, -4, -8,-11,-23,-18, 12; /I: I=-6; MI=0; MD=-32; IM=0; DM=-32; /M: SY='G'; M= 3,-15,-10,-17,-21,-25, 26,-21,-25,-18,-27,-21,-14,-20,-18,-18, -2,-10,-17,-29,-25,-20; /M: SY='V'; M= -4,-27,-13,-27,-27, -5,-30,-27, 24,-21, 8, 11,-27,-23,-19,-29,-19, -3, 30,-27, -8,-20; /M: SY='R'; M=-10, -7,-36,-15, 2,-27,-19, 9,-29, 16,-22,-18, 2,-18, 14, 42, -6,-10,-28,-28,-15, 3; /M: SY='V'; M= -3,-21,-14,-24,-21,-15,-27,-24, 15, -8, 0, 3,-19,-18,-14,-20,-14, 1, 25,-31,-13,-14; /M: SY='K'; M=-10, -3,-33,-13, 7,-30,-20, -7,-30, 41,-27,-20, 0,-13, 10, 32, -3,-10,-23,-30,-20, 7; /M: SY='N'; M=-16, 8,-28, 0, -2,-20,-18, 5,-18, -5,-21, 2, 23,-22, 2, -6, -2, -7,-18,-32,-14, -3; /M: SY='P'; M= -3,-13,-19,-13, -9,-29,-17,-19,-20, -9,-22,-20, -8, 31, -9,-15, 5, 17,-12,-35,-25, -9; /M: SY='V'; M= -1,-30,-10,-30,-30, -9,-31,-30, 31,-21, 11, 10,-30,-21,-21,-30,-20, -1, 39,-29,-10,-21; /M: SY='K'; M=-10, -3,-33,-13, 7,-30,-20, -7,-30, 42,-27,-20, 0,-13, 10, 31, -3,-10,-23,-30,-20, 7; /M: SY='E'; M=-10, 17,-38, 30, 38,-32,-16, -4,-29, 3,-32,-22, 2,-13, 12, -6, 1, -9,-28,-36,-23, 28; /M: SY='L'; M=-19,-39,-11,-39,-29, 0,-39,-29, 19,-29, 38, 25,-38,-30,-18,-20,-29,-10, 10,-20,-10,-29; /M: SY='L'; M=-18,-38,-10,-38,-30, 0,-40,-30, 25,-30, 35, 18,-38,-30,-22,-22,-28,-10, 15,-20,-10,-30; /M: SY='R'; M=-10,-19,-25,-23, -8,-16,-26,-14, -9, 2, 1, 10,-14,-22, 1, 11,-14,-10, -9,-25,-15, -8; /M: SY='Q'; M=-14, -4,-28,-10, 0,-19,-21, 4,-17, 0,-14, 6, 7,-20, 12, 3, -6, -9,-16,-27,-13, 1; /M: SY='K'; M=-10,-13,-24,-20, -7,-16,-27,-15, -5, 14,-10, -9,-12,-20, -5, 8, -9,-10, -4,-25,-14, -7; /M: SY='R'; M=-11, -7,-37,-16, 3,-28,-20, 8,-30, 19,-22,-18, 1,-18, 15, 45, -8,-11,-28,-28,-16, 4; /M: SY='Q'; M= -5,-14,-17,-14, -9,-16,-15,-14, -5,-10, -7, -4,-10,-18, 2,-10, 2, -3, -5,-25,-17, -6; /M: SY='A'; M= 5,-12,-15,-14, -8,-20,-11,-15,-10, -5,-13, -7,-10,-16, -2, -6, 1, -4, -6,-28,-18, -7; /I: E1=0; IE=-105; DE=-105;» more |
Numerical results [info]
| Total number of hits | 11 in 11 different sequences |
| Number of true positive hits | 11 in 11 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Matrix type [info] | protein_domain |
| Scaling database [info] | reversed |
| Author [info] | CJA_Sigrist |
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 1 |
| Feature key [info] | DOMAIN |
| Feature description [info] | OCA |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
11 sequences
IKBZ_BOVIN (Q9BE45 ), IKBZ_HUMAN (Q9BYH8 ), IKBZ_MOUSE (Q9EST8 ), OBF1_BOVIN (Q2KJA4 ), OBF1_HUMAN (Q16633 ), OBF1_MOUSE (Q64693 ), OCAT1_DANRE (A0PJS5 ), OCAT1_HUMAN (Q8IXP5 ), OCAT1_MOUSE (Q9D8Q6 ), OCAT2_HUMAN (A8K830 ), OCAT2_MOUSE (F8VPY8 )» more
|
| PDB [Detailed view] |
1 PDB
1CQT |
View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission