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Entry: PS52003

General information about the entry

Entry name [info] OCA
Accession [info] PS52003
Entry type [info] MATRIX
Date [info] 12-OCT-2022 CREATED;
12-OCT-2022 DATA UPDATE;
12-OCT-2022 INFO UPDATE.
PROSITE Doc. [info] PDOC52003
Associated ProRule [info] PRU01347

Name and characterization of the entry

Description [info] OCA domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=23;
/DISJOINT: DEFINITION=PROTECT; N1=3; N2=21;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.9030631; R2=0.0206927; TEXT='-LogE';
/CUT_OFF: LEVEL=0; SCORE=343; N_SCORE=9.0; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=223; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-11; D=-20; I=-20; B1=-100; E1=-100; MI=-105; MD=-105; IM=-105; DM=-105;
...
                A   B   C   D   E   F   G   H   I   K   L   M   N   P   Q   R   S   T   V   W   Y   Z
/I:         B1=0; BI=-105; BD=-105;
/M: SY='S';  M= -1,-11,-14,-13,  0,-22,-17,-12,-20,  0,-21,-17, -9, -3, -2,  0,  1, -3,-18,-28,-19, -2;
/M: SY='G';  M= -7,-10,-13,-13,-11,-24,  3,-13,-26, -3,-24,-20,-10,-20, -6, -4, -6,-14,-21,-26,-18,-11;
/M: SY='H';  M= -7,-14,-10,-18,-10,-16,-21,  1,-17, -2,-19,-17,-10,-13, -6, -1, -7,-11,-15,-22, -4,-10;
/M: SY='Y';  M=-13,-30,-16,-32,-24, 23,-30, -1,  3,-23, -1, -2,-25,-30,-22,-23,-19,-15,  1,  4, 36,-23;
/M: SY='Q';  M=-10, -7,-25, -9,  6,-23,-22, -3,-18,  6,-11,  2, -6,-14, 30,  2, -4, -8,-11,-23,-18, 12;
/I:         I=-6; MI=0; MD=-32; IM=0; DM=-32;
/M: SY='G';  M=  3,-15,-10,-17,-21,-25, 26,-21,-25,-18,-27,-21,-14,-20,-18,-18, -2,-10,-17,-29,-25,-20;
/M: SY='V';  M= -4,-27,-13,-27,-27, -5,-30,-27, 24,-21,  8, 11,-27,-23,-19,-29,-19, -3, 30,-27, -8,-20;
/M: SY='R';  M=-10, -7,-36,-15,  2,-27,-19,  9,-29, 16,-22,-18,  2,-18, 14, 42, -6,-10,-28,-28,-15,  3;
/M: SY='V';  M= -3,-21,-14,-24,-21,-15,-27,-24, 15, -8,  0,  3,-19,-18,-14,-20,-14,  1, 25,-31,-13,-14;
/M: SY='K';  M=-10, -3,-33,-13,  7,-30,-20, -7,-30, 41,-27,-20,  0,-13, 10, 32, -3,-10,-23,-30,-20,  7;
/M: SY='N';  M=-16,  8,-28,  0, -2,-20,-18,  5,-18, -5,-21,  2, 23,-22,  2, -6, -2, -7,-18,-32,-14, -3;
/M: SY='P';  M= -3,-13,-19,-13, -9,-29,-17,-19,-20, -9,-22,-20, -8, 31, -9,-15,  5, 17,-12,-35,-25, -9;
/M: SY='V';  M= -1,-30,-10,-30,-30, -9,-31,-30, 31,-21, 11, 10,-30,-21,-21,-30,-20, -1, 39,-29,-10,-21;
/M: SY='K';  M=-10, -3,-33,-13,  7,-30,-20, -7,-30, 42,-27,-20,  0,-13, 10, 31, -3,-10,-23,-30,-20,  7;
/M: SY='E';  M=-10, 17,-38, 30, 38,-32,-16, -4,-29,  3,-32,-22,  2,-13, 12, -6,  1, -9,-28,-36,-23, 28;
/M: SY='L';  M=-19,-39,-11,-39,-29,  0,-39,-29, 19,-29, 38, 25,-38,-30,-18,-20,-29,-10, 10,-20,-10,-29;
/M: SY='L';  M=-18,-38,-10,-38,-30,  0,-40,-30, 25,-30, 35, 18,-38,-30,-22,-22,-28,-10, 15,-20,-10,-30;
/M: SY='R';  M=-10,-19,-25,-23, -8,-16,-26,-14, -9,  2,  1, 10,-14,-22,  1, 11,-14,-10, -9,-25,-15, -8;
/M: SY='Q';  M=-14, -4,-28,-10,  0,-19,-21,  4,-17,  0,-14,  6,  7,-20, 12,  3, -6, -9,-16,-27,-13,  1;
/M: SY='K';  M=-10,-13,-24,-20, -7,-16,-27,-15, -5, 14,-10, -9,-12,-20, -5,  8, -9,-10, -4,-25,-14, -7;
/M: SY='R';  M=-11, -7,-37,-16,  3,-28,-20,  8,-30, 19,-22,-18,  1,-18, 15, 45, -8,-11,-28,-28,-16,  4;
/M: SY='Q';  M= -5,-14,-17,-14, -9,-16,-15,-14, -5,-10, -7, -4,-10,-18,  2,-10,  2, -3, -5,-25,-17, -6;
/M: SY='A';  M=  5,-12,-15,-14, -8,-20,-11,-15,-10, -5,-13, -7,-10,-16, -2, -6,  1, -4, -6,-28,-18, -7;
/I:         E1=0; IE=-105; DE=-105;
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2022_04 which contains 568'363 sequence entries.


Total number of hits 11 in 11 different sequences
Number of true positive hits 11 in 11 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Feature key [info] DOMAIN
Feature description [info] OCA
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
11 sequences

IKBZ_BOVIN  (Q9BE45    ), IKBZ_HUMAN  (Q9BYH8    ), IKBZ_MOUSE  (Q9EST8    ), 
OBF1_BOVIN  (Q2KJA4    ), OBF1_HUMAN  (Q16633    ), OBF1_MOUSE  (Q64693    ), 
OCAT1_DANRE (A0PJS5    ), OCAT1_HUMAN (Q8IXP5    ), OCAT1_MOUSE (Q9D8Q6    ), 
OCAT2_HUMAN (A8K830    ), OCAT2_MOUSE (F8VPY8    )
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PDB
[Detailed view]
1 PDB

1CQT

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