PROSITE entry PS52030
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General information about the entry
| Entry name [info] | SMDRR |
| Accession [info] | PS52030 |
| Entry type [info] | MATRIX |
| Date [info] |
08-NOV-2023 CREATED;
08-NOV-2023 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC52028 |
| Associated ProRule [info] | PRU01374 |
Name and characterization of the entry
| Description [info] | Streptococcal M proteins D repeats region profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=27; /DISJOINT: DEFINITION=PROTECT; N1=3; N2=25; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.2162844; R2=0.0092737; TEXT='-LogE'; /CUT_OFF: LEVEL=0; SCORE=786; N_SCORE=8.5; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=570; N_SCORE=6.5; MODE=1; TEXT='?'; /DEFAULT: M0=-6; D=-20; I=-20; B1=-100; E1=-100; MI=-105; MD=-105; IM=-105; DM=-105; ... A B C D E F G H I K L M N P Q R S T V W Y Z /I: B1=0; BI=-105; BD=-105; /M: SY='E'; M= 4, 4,-25, 7, 35,-28,-15, -6,-25, 12,-19,-16, -2, -4, 11, 1, 1, -8,-21,-26,-18, 23; /M: SY='R'; M= 7, -7,-23,-11, -1,-23,-13, -9,-23, 21,-19,-10, -3,-14, 3, 29, -3, -7,-13,-20,-13, -1; /M: SY='L'; M= -9,-30,-21,-32,-23, 7,-32,-23, 27,-29, 38, 19,-28,-28,-21,-22,-25, -9, 20,-21, -1,-23; /M: SY='E'; M=-10, 5,-30, 10, 34,-30,-20, -5,-30, 31,-25,-15, 0, -5, 15, 16, -5,-10,-25,-25,-15, 24; /M: SY='V'; M= 24,-20,-10,-25,-20,-10,-16,-25, 11,-15, 0, 0,-20,-20,-20,-20, 0, 0, 26,-25,-15,-20; /M: SY='E'; M=-10, 10,-30, 20, 60,-30,-20, 0,-30, 10,-20,-20, 0, 0, 20, 0, 0,-10,-30,-30,-20, 40; /M: SY='N'; M= 19, 16,-15, 1, -5,-20, 0, -4,-15, -5,-20,-15, 26,-15, -5,-10, 10, 0,-16,-30,-20, -5; /M: SY='A'; M= 21, -5,-20,-10, 0,-25,-10,-15,-20, 19,-20,-10, -5,-10, 0, 4, 0, -5,-10,-20,-15, 0; /M: SY='K'; M= 19, -5,-20,-10, 0,-25,-10,-15,-20, 21,-20,-10, -5,-10, 0, 6, 0, -5,-10,-20,-15, 0; /M: SY='Y'; M=-15,-25,-25,-25,-20, 20,-30, 1, 10,-20, 24, 10,-25,-30,-15,-15,-25,-10, 0, 6, 42,-20; /M: SY='K'; M=-10, 0,-30, 0, 10,-30,-20,-10,-30, 50,-30,-10, 0,-10, 10, 30,-10,-10,-20,-20,-10, 10; /M: SY='E'; M=-10, 10,-30, 20, 60,-30,-20, 0,-30, 10,-20,-20, 0, 0, 20, 0, 0,-10,-30,-30,-20, 40; /M: SY='Q'; M=-10, 0,-30, 0, 20,-40,-20, 10,-20, 10,-20, 0, 0,-10, 60, 10, 0,-10,-30,-20,-10, 40; /M: SY='L'; M=-10,-30,-20,-30,-20, 10,-30,-20, 20,-30, 50, 20,-30,-30,-20,-20,-30,-10, 10,-20, 0,-20; /M: SY='A'; M= 40,-14,-10,-22,-14,-16, -6,-22, -2,-12, -6, -6,-14,-14,-14,-20, 6, 0, 10,-22,-18,-14; /M: SY='K'; M=-10, 0,-30, 0, 10,-30,-20,-10,-30, 50,-30,-10, 0,-10, 10, 30,-10,-10,-20,-20,-10, 10; /M: SY='Q'; M=-10, 0,-30, 0, 20,-40,-20, 10,-20, 10,-20, 0, 0,-10, 60, 10, 0,-10,-30,-20,-10, 40; /M: SY='A'; M= 50,-10,-10,-20,-10,-20, 0,-20,-10,-10,-10,-10,-10,-10,-10,-20, 10, 0, 0,-20,-20,-10; /M: SY='E'; M=-10, 10,-30, 20, 60,-30,-20, 0,-30, 10,-20,-20, 0, 0, 20, 0, 0,-10,-30,-30,-20, 40; /M: SY='E'; M=-10, 10,-30, 20, 60,-30,-20, 0,-30, 10,-20,-20, 0, 0, 20, 0, 0,-10,-30,-30,-20, 40; /M: SY='L'; M=-10,-30,-20,-30,-20, 10,-30,-20, 20,-30, 50, 20,-30,-30,-20,-20,-30,-10, 10,-20, 0,-20; /M: SY='E'; M= 19, 0,-20, 1, 26,-25,-10,-10,-20, 0,-15,-15, -5, -5, 6,-10, 5, -5,-16,-25,-20, 16; /M: SY='K'; M=-10, 0,-30, 0, 10,-30,-20,-10,-30, 50,-30,-10, 0,-10, 10, 30,-10,-10,-20,-20,-10, 10; /M: SY='A'; M= 21,-20,-15,-25,-15, -6,-14,-20, 4,-20, 19, 4,-20,-20,-15,-20, -9, -5, 5,-20,-10,-15; /M: SY='K'; M=-10, 0,-30, 0, 10,-30,-20,-10,-30, 50,-30,-10, 0,-10, 10, 30,-10,-10,-20,-20,-10, 10; /M: SY='A'; M= 39,-10,-15,-18,-12,-22, 16,-20,-17,-12,-15,-12, -8,-12,-12,-20, 8, -5, -7,-20,-22,-12; /M: SY='E'; M=-13, 27,-28, 33, 36,-30,-13, 2,-30, 5,-25,-23, 19, -7, 10, -3, 2, -8,-30,-35,-20, 23; /I: E1=0; IE=-105; DE=-105;» more |
Numerical results [info]
| Total number of hits | 13 in 13 different sequences |
| Number of true positive hits | 13 in 13 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Taxonomic range [info] | Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Matrix type [info] | protein_domain |
| Scaling database [info] | reversed |
| Author [info] | CJA_Sigrist |
| Feature key [info] | REPEAT |
| Feature description [info] | D |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
13 sequences
ARP4_STRPY (P13050), M12_STRPY (P19401), M21_STRPY (P50468), M22_STRPY (P50469), M24_STRPY (P12379), M49_STRP9 (P16947), M5_STRP5(P02977), M6A_STRP6 (Q5X9Q9), M6B_STRPY (P08089), MRP4_STRPY (P30141), MX_STRP9(P16946), PAM_STRPY (P49054), SPH_STRP1 (P50470)» more
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| PDB [Detailed view] |
1 PDB
8SKV |