PROSITE entry PS52036
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General information about the entry
| Entry name [info] | ZF_RG_N |
| Accession [info] | PS52036 |
| Entry type [info] | MATRIX |
| Date [info] |
24-JAN-2024 CREATED;
24-JAN-2024 DATA UPDATE; 27-MAR-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC52036 |
| Associated ProRule [info] | PRU01380 |
Name and characterization of the entry
| Description [info] | Zinc finger reverse gyrase N-terminal-type profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=40; /DISJOINT: DEFINITION=PROTECT; N1=5; N2=36; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.3040311; R2=0.0087802; TEXT='-LogE'; /CUT_OFF: LEVEL=0; SCORE=1219; N_SCORE=13.0; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=478; N_SCORE=6.5; MODE=1; TEXT='?'; /DEFAULT: M0=-31; D=-150; I=-150; B1=-1000; E1=-1000; MI=-380; MD=-380; IM=-380; DM=-380; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; BI=-380; BD=-380; /M: SY='M'; M= -62, -70, -82, -74, -52, -77, -57, -3, -67, -18, 138, -18, -72, -60, -66, -71, -60, -3, -76, -52; /I: I=-25; MD=-63; /M: SY='N'; M= -2, -90, 19, 2, -86, -20, -36, -78, -77, 0, -77, 25, -89, -75, -48, -13, -23, -20, -2, -84; D=-25; /I: I=-25; DM=-63; /M: SY='I'; M= -65, -78, -80, -76, -59, -84, -79, 52, -74, 17, -12, -35, 45, -74, -41, -25, 9, 39, -82, -32; D=-25; /I: I=-25; MI=-63; IM=-63; DM=-63; /M: SY='N'; M= -27, -77, -28, 15, -47, -18, 25, 0, 0, -6, -8, 48, 40, -54, 38, -58, -17, -17, -80, -32; /M: SY='P'; M= 49, -70, -71, -66, -33, 5, -70, 11, -67, -7, 21, -66, 57, -64, -72, 6, -55, 21, -75, -26; /M: SY='I'; M= -41, -73, -78, -74, -24, -81, -72, 72, -23, 14, -41, -72, -76, -68, -3, 0, -56, 44, -70, 25; /M: SY='Y'; M= -71, -80, -73, -75, 31, -79, -42, -10, -68, -4, -47, -73, -83, -64, -65, -68, -65, -56, -31, 125; /M: SY='R'; M= -3, -75, -10, 13, -68, -32, 22, -44, 45, 1, 12, -1, -69, -23, 57, -5, -12, -65, -76, -23; /M: SY='H'; M= -29, -74, -7, -12, -42, 33, 78, -79, -3, -76, -65, 62, -69, -24, 18, 21, -56, -77, -80, 8; /M: SY='L'; M= 9, -16, -72, -70, -6, 25, -67, 2, -69, 49, 24, -64, -74, -64, -71, 43, -55, -28, -72, -29; /M: SY='C'; M= -61, 154, -81, -81, -71, -77, -81, -78, -77, -69, -69, -67, -92, -85, -83, -64, -61, -66,-101, -82; /M: SY='P'; M= -66, -87, -70, -60, 8, -72, -72, 12, -66, -68, -62, -74, 117, -69, -76, -65, -59, -4, -75, -71; /M: SY='N'; M= -33, -69, -48, -61, -64, -59, -3, 4, -53, -11, -57, 99, -73, -19, -5, 3, -20, 9, -84, -1; /M: SY='C'; M= -61, 154, -81, -81, -71, -77, -81, -78, -77, -69, -69, -67, -92, -85, -83, -64, -61, -66,-101, -82; /M: SY='G'; M= -52, -75, -24, -67, -33, 89, -9, -86, -18, -83, -73, 35, -69, -23, -38, -2, -62, -81, -76, -72; /M: SY='G'; M= -52, -14, -61, -11, -79, 86, -65, -54, -38, -81, -72, 5, -69, -59, 30, -6, -46, -79, 19, -72; /M: SY='D'; M= -32, -76, 68, 42, -75, -42, -12, -27, -24, -47, -19, 16, 29, -51, 1, 5, 16, -44, -85, -27; /I: I=-45; MI=0; MD=-115; IM=0; DM=-115; /M: SY='I'; M= 10, 4, -46, -75, -53, -76, -75, 78, -72, 19, -41, 21, -75, -70, -75, -33, -56, 26, -78, -60; /M: SY='S'; M= -10, -69, 44, 27, -76, -59, -59, -73, -25, -74, -69, -15, -19, -50, -12, 66, 52, -65, -85, -68; /M: SY='D'; M= 18, -70, 68, 9, -37, -57, -58, -45, -55, -74, -70, 10, -65, -52, -38, 65, -1, -37, -86, -67; /M: SY='E'; M= -58, -74, 21, 62, -62, -39, -25, -62, -35, -4, -60, 11, -66, -16, 7, 21, 1, 6, -73, 35; /M: SY='R'; M= -32, -80, 23, 50, -78, -71, -53, -82, -17, -76, -68, -15, -68, -41, 92, 0, -60, -75, -79, -66; /M: SY='L'; M= -3, -70, -77, -75, -46, -79, -70, 47, -74, 72, -34, 14, -79, -69, -74, -69, -59, -12, -74, -56; /M: SY='E'; M= 3, -72, -4, 50, -36, -45, -62, 32, -13, 12, 9, 3, -68, -53, -22, 4, -7, 0, -77, -23; /M: SY='K'; M= 2, -73, -54, 21, -67, -15, -21, -17, 40, 2, -21, 34, -68, 25, 13, 23, -23, -63, -75, -3; /M: SY='G'; M= -56, -5, -61, -40, -28, 75, 35, -79, 15, -55, -67, 9, -70, -57, 29, -34, -64, -43, -71, 18; /I: I=-42; MI=0; MD=-106; IM=0; DM=-106; /M: SY='G'; M= -35, -77, -72, -77, 2, 45, -10, -59, -74, 44, -16, 37, -81, -71, -77, -15, -46, -44, -80, -65; D=-42; /I: I=-42; DM=-106; /M: SY='P'; M= 20, -11, -69, -61, -16, -68, -24, 15, -14, -46, -6, -66, 83, -63, -14, 5, 2, 18, -78, -67; /M: SY='C'; M= -61, 154, -81, -81, -71, -77, -81, -78, -77, -69, -69, -67, -92, -85, -83, -64, -61, -66,-101, -82; /I: I=-28; MI=0; MD=-70; IM=0; DM=-70; /M: SY='E'; M= -27, -75, 33, 63, -79, -65, 8, -76, 8, -76, -69, -2, 20, -45, 12, 40, 10, -45, -83, -68; /M: SY='K'; M= -28, -74, -54, 24, -71, -68, -57, -5, 57, -24, -59, 36, -68, -5, 45, 14, -55, 2, -78, -65; /M: SY='C'; M= -61, 149, 15, -73, -73, -75, -77, -79, -74, -70, -70, -63, -89, -80, -81, -32, -60, -67,-101, -81; /M: SY='M'; M= -14, -71, -75, -40, -17, -77, -15, 16, -65, 52, 56, -34, -77, -32, 6, -6, -34, 9, -68, 29; /I: I=-22; MD=-55; /M: SY='H'; M= -41,-101, -7, -38, -19, -92, 14, -95, -46, -66, -90, 2, -4, -39, 12, 9, -16, -46,-107, -87; D=-22; /I: I=-22; MI=0; MD=-55; IM=0; DM=-55; /M: SY='P'; M= -37, -78, 26, 40, -19, -25, -59, -74, -11, -77, -69, 6, 75, -1, -11, 39, -53, -40, -80, -70; /M: SY='E'; M= -59, -76, 16, 76, -75, -13, -55, -74, 12, -28, -66, 17, -62, 0, 8, 7, 4, -43, -79, -20; /M: SY='D'; M= -42, -78, 64, 55, -30, -15, -4, -19, 0, -22, -66, 1, 11, -24, 8, -15, -58, -36, -83, -66; /M: SY='I'; M= -42, -72, -23, -19, -22, -12, -8, 32, 28, -5, -53, 13, -36, -16, 3, 24, 9, 24, -78, -61; /M: SY='E'; M= -18, -2, 14, 45, -23, -16, -30, -1, 1, 9, -57, 13, -31, -27, 1, 5, 14, -11, -79, -64; /M: SY='L'; M= 2, -22, -29, 20, 6, -14, -62, 11, -11, 21, -19, 4, 14, -57, 4, 11, -26, -8, -71, 8; /I: E1=0; IE=-380; DE=-380;» more |
Numerical results [info]
| Total number of hits | 22 in 22 different sequences |
| Number of true positive hits | 22 in 22 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Matrix type [info] | protein_domain |
| Scaling database [info] | reversed |
| Author [info] | CJA_Sigrist |
| Taxonomic range [info] | Archaea, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Feature key [info] | ZN_FING |
| Feature description [info] | RG N-terminal-type |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
22 sequences
RGYR1_AERPE (Q9YCB6), RGYR1_AQUAE (O67037), RGYR1_SACS2 (Q97ZZ8), RGYR1_SULAC (Q08582), RGYR1_SULTO (Q971T7), RGYR2_AERPE (Q9YC75), RGYR2_AQUAE (O67226), RGYR2_SACS2 (Q97ZF5), RGYR2_SULAC (P0DW67), RGYR2_SULTO (Q975P6), RGYRB_METKA (F1SVH1), RGYRB_NANEQ (Q74M79), RGYR_ARCFU (O29238), RGYR_CALS4 (Q8R979), RGYR_METJA (Q58907), RGYR_PYRAB (Q9UZ86), RGYR_PYRAE (Q8ZXT5), RGYR_PYRFU (P95479), RGYR_PYRHO (O58530), RGYR_SACSH (P74759), RGYR_THEKO (Q6F598), RGYR_THEMA (O51934)» more
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| PDB [Detailed view] |
9 PDB
1GL9; 4DDT; 4DDU; 4DDV; 4DDW; 4DDX; 7FSE; 7FSF; 8OFB |