PROSITE entry PS52089
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PURL: https://purl.expasy.org/prosite/signature/PS52089
Direct ScanProsite submission
General information about the entry
| Entry name [info] | HTH_NTRC |
| Accession [info] | PS52089 |
| Entry type [info] | MATRIX |
| Date [info] |
10-JUN-2026 CREATED;
10-JUN-2026 DATA UPDATE; 10-JUN-2026 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC52089 |
| Associated ProRule [info] | PRU01435 |
Name and characterization of the entry
| Description [info] | NtrC-type HTH DNA-binding domain profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=50; /DISJOINT: DEFINITION=PROTECT; N1=6; N2=45; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.3164055; R2=0.0088995; TEXT='-LogE'; /CUT_OFF: LEVEL=0; SCORE=1145; N_SCORE=12.5; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=471; N_SCORE=6.5; MODE=1; TEXT='?'; /DEFAULT: M0=-48; D=-100; I=-100; B1=-1000; E1=-1000; MI=-255; MD=-255; IM=-255; DM=-255; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; BI=-255; BD=-255; /M: SY='D'; M= 20, -14, 25, 17, -60, 18, 8, -19, -30, 11, 2, 1, 17, 4, -19, -57, -20, 5,-127,-112; /M: SY='N'; M= -26, -16, 21, -17, -66, 18, -47, -54, -64, -1,-108, 43, 34, -2, -14, 14, 39, -7,-129, -50; /M: SY='L'; M= -7,-118, -17, 0, -15, -52,-108, -92, -57, 68, -89, 1, -39, -42,-115, -26, -13, -17,-113, 50; /M: SY='R'; M= -27,-124, 34, 16,-120, 2, -36, -7, 32, -34, -11, -17, 14, -40, 48, 17, -42, -22, 12,-113; /M: SY='E'; M= 2, -10, 24, 59, -26, -71, -35, -73,-101, 9, 58, -57, -26, 37, -16, -19, 6, -18,-126,-110; /M: SY='A'; M= 43,-119, -7, -32, -28, -71, -27, 4, 27, -34,-105, -57, 27, 3, 4, 21, -9, 12,-123, -29; /M: SY='L'; M= -21,-117,-116, -16, -22,-122, -8, -15,-109, 53, 41, -31, -7, 7, 4, -32, 47, -1,-122, -40; /M: SY='E'; M= 0, -42, 37, 70,-124, -12, -11,-123, -24, -74, -32, -10, 7, -26, 23, 16, -34, -57, 35,-115; /M: SY='Q'; M= 24,-122, 11, 55, -41, -50, -34, -69, -23, -2, 8, -26, -46, 60, 28, -48, -36, -20,-125,-111; /M: SY='F'; M= -72,-119, -4, -44, 72,-126,-115, 32,-117, 2, 28,-116, -20, -46, -63, -22, 5, 41,-110, 21; /M: SY='E'; M=-108,-129, -4, 107,-131, -72,-100,-130, -89, -80,-117,-102,-106, 56, -6, -58,-108,-124,-127,-118; /M: SY='R'; M= 17, -36, -55, -98, -58, -65, -31, -49, 64, -32, -48, -47,-118, 19, 80,-105,-109,-115, 33, -3; /M: SY='Q'; M= 0,-125, 14, 59,-124, -47, -14,-118, -36, -42, 25, 5, 41, 68, -17, 2, -41, -79,-126, -52; /M: SY='L'; M= 10, -2,-122, -60, -98,-124, 29, 30,-110, 51, 46,-117,-124, -54, 28,-112, -18, 11, -12, 13; /M: SY='I'; M=-113,-121,-133,-128, -60,-135,-124, 88,-125, 62, 0,-127, -44,-120,-126,-122,-108, -23,-120,-102; /M: SY='Q'; M= -52,-123, 5, 30,-113, -66, -37, 44, -11, -9, 14,-105,-116, 50, 34, 1, 10, 4,-126,-109; /M: SY='Q'; M= 21, -41, 13, 21,-122,-113, -21, -29, -1, -42, 10, -15,-114, 85, 27, -5, -2, -88, 17,-110; /M: SY='A'; M= 76, 6,-116, -65, -40,-108,-117, -15,-111, -29,-102,-109,-116, -7, -64, -17, 40, 31,-125, -38; /M: SY='M'; M= -43,-118,-130,-123, -88,-129,-109, -6,-121, 79, 86,-126,-127, -73,-119,-121,-110, -88,-112, 47; /M: SY='E'; M= 17,-123, -4, 72,-125,-114,-103,-119, 15, -45, -56, 11,-111, 51, 29, -12, -22, -35,-127,-115; /M: SY='R'; M= 17,-122, -40, 21, -29,-114, 31, -34, 19, -54, -13, -29,-116, 48, 53, 21, -26, -39, -24, 13; /M: SY='C'; M= 15, 78,-107, -63, 12, -66, 69,-116,-108,-114,-109, 33, -57, -5,-111, 29, 58, -80,-126, 9; /M: SY='G'; M= -54, -33, 26, 6,-127, 51, 46,-129, 4, -89,-116, 48, 0, 22, 41, -25,-107,-126,-129,-114; /I: I=-24; MD=-61; /M: SY='W'; M=-111,-134,-119,-123, -22, 75, 39,-134,-116,-129, -38, 16,-125, -6, -12,-109,-122,-134, 104, 0; D=-24; /I: I=-24; MI=0; MD=-61; IM=0; DM=-61; /M: SY='N'; M=-106, -14, 4,-105,-120, -42, 4,-111, -99,-120,-112, 107,-119,-101, 2, 17, 11, 22,-139,-115; /M: SY='W'; M=-110,-126,-117,-103, -49,-123,-112, 37, 18, -23, 32,-111, -24, 84, 11,-108, -8, 19, 93,-101; /M: SY='A'; M= 51,-115, 7,-101,-121, -49,-110, -46, 22, -89,-110, -51, -13, 7, 12, 42, 49, -31,-127,-115; /M: SY='K'; M= 31,-124, -47, 56,-126, -44, 32,-125, 61, -88,-112,-101,-112, 22, 47, -42,-106,-118,-124,-113; /M: SY='A'; M= 88, 19,-115,-110,-117,-103,-117,-104,-111, -30, 1,-108,-115,-109,-115, -37, 47, -4,-126,-116; /M: SY='A'; M= 99, -36,-114,-108,-121, -98,-116, -66,-110, -54,-108,-108,-114,-106,-114, 30, -97,-100,-124,-118; /M: SY='R'; M= -28,-125, -15, 25,-123, -44,-102,-101, 38, -34, -38, -8,-116, 38, 83, -12, -16, -64,-125,-112; /M: SY='M'; M= 14,-120,-112, 21, -16,-120, -41, 1, -43, 34, 64, 4,-120, 10, 38, -67, -35, -99,-115, 36; /M: SY='L'; M= -57,-118,-133,-125, -92,-134,-118, -47,-126, 92, 13,-131,-132,-119,-124, -64,-111, -28,-121,-103; /M: SY='G'; M=-102,-126, -1, 24,-132, 94,-114,-138,-111,-134,-124, 16,-116, -10, -64, -64,-114,-132,-126,-125; /M: SY='M'; M=-112,-122,-132,-125, -98,-133,-121, 71, -53, 38, 82,-124,-125,-117, -27,-120, -9, 15, 10,-104; /M: SY='S'; M= -69,-120, 43, -24,-126, -14, 21,-124, -35,-126,-119, 46, 34,-103, -62, 58, 49,-119,-137,-117; /M: SY='R'; M= -24,-130,-114,-105, -71, -88, 22, -35, -56, -81,-111,-109, 53, -98, 98, -25, -35, -16,-126, -42; /M: SY='R'; M= 10,-121,-108,-106,-124, 13, -30,-121, 3,-122, -28, 26, -49, -28, 66, 32, 41, -44,-129,-116; /M: SY='T'; M= 7,-115,-104, -45,-122, -45,-110, -61, -62,-116, -38, 46,-113, 54,-109, -32, 93, -48,-134,-116; /M: SY='L'; M=-115,-119,-134,-127, 20,-135,-120, 28,-127, 79, 7,-130,-131,-122,-125,-124, -33, 6,-119,-100; /M: SY='Y'; M= 12,-127, -62,-110,-100, 5, 75,-118,-101, -34, -45,-108,-123, 2, 54, -63, -29, -73, 56, 79; /M: SY='R'; M= -33,-127, -20, -62,-105,-120, -5, -71, 40, -62,-109, 20,-122, -54, 78, -36, -33, -52,-112, 72; /M: SY='K'; M= 0,-125,-112,-100,-118,-121,-109, -30, 85, 18,-105,-105,-119, -95, 61, -63,-109,-112,-123,-112; /M: SY='L'; M= 16, -38,-131,-123, -96,-128,-117, 29,-122, 74, 68,-126,-128,-116, -37,-119,-110, -88,-122,-105; /M: SY='K'; M= -27,-127, -41, -34,-127, -78,-106, -29, 87, -66,-112,-100,-116, 53, 48, -16, -69,-119,-124,-114; /M: SY='R'; M= -14,-128, -15, 24,-126,-121,-106, -50, 62, -45,-112,-103,-117, 46, 70, -53, -35, -72,-126,-115; /M: SY='Y'; M=-120,-128,-125,-123, 19, -75, 67, -25,-119, 47, 4,-121,-132,-114, -23,-121,-117,-105, 46, 90; /M: SY='G'; M= -46,-126, 23, -9,-132, 79, -45,-136, -69,-134,-124, 48,-119, -23, -30, 4, -62,-131,-131,-125; /M: SY='I'; M=-115, -45, -43, -17,-101, -96, -43, 73, -67, 46, 49,-125, -2,-119,-125, -53,-111, -15,-126,-108; /M: SY='K'; M= -17,-127, 31, 18,-128, -14, 23,-126, 43, -18,-117, 22, -32, 5, -25, 17, -17, -88,-135,-119; /I: E1=0; IE=-255; DE=-255;» more |
Numerical results [info]
| Total number of hits | 289 in 289 different sequences |
| Number of true positive hits | 289 in 289 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Taxonomic range [info] | Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Matrix type [info] | protein_domain |
| Scaling database [info] | reversed |
| Author [info] | CJA_Sigrist |
| Feature key [info] | DOMAIN |
| Feature description [info] | HTH NtrC-type |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
289 sequences
ACOR_BACSU (O31551), ACOR_CUPNH (P28614), ACTR_RHIME (P0C5S3), ACTR_SINMW (A6UEL7), ALGB_PSEAE (P23747), ALGB_PSEPK (Q88RJ6), ALGB_PSESM (Q88AQ2), ANFA_AZOVI (P12626), ATOC_ECOLI (Q06065), CRTJ_RHOCA (P26167), DCTD_PSEAE (Q9HU19), DCTD_RHILE (P10046), DCTD_RHIME (P13632), DHAR_CITFR (P45512), DHAR_ECOLI (P76016), FHLA_ECOLI (P19323), FHLA_SALTS (E1WAA4), FHLA_SALTY (P0CL46), FISL_NEIMA (P64130), FISL_NEIMB (P64131), FISL_PSEAE (Q9HUW0), FISL_RALN1 (Q8Y231), FISL_XANC3 (Q8PQ10), FISL_XANCP (Q8PD37), FISL_XYLFA (Q9PBY7), FISL_XYLFT (Q87D75), FIS_ACTSZ (A6VM24), FIS_AERHH (A0KNY4), FIS_AERS4 (A4SJ84), FIS_ALIF1 (Q5E260), FIS_ALIFM (B5FC67), FIS_ALISL (B6ENA5), FIS_BUCA5 (B8D9I3), FIS_BUCAI (P57480), FIS_BUCAP (Q8K9F0), FIS_BUCAT (B8D7T5), FIS_CITK8 (A8AQG0), FIS_CROS8 (A7MJA9), FIS_ECO24 (A7ZSF6), FIS_ECO27 (B7UJZ2), FIS_ECO45 (B7MC31), FIS_ECO55 (B7LHW8), FIS_ECO57 (P0A6R5), FIS_ECO5E (B5YSY6), FIS_ECO7I (B7NLI7), FIS_ECO81 (B7N0Q5), FIS_ECO8A (B7M0X3), FIS_ECOBW (C4ZSZ7), FIS_ECODH (B1XHN0), FIS_ECOHS (A8A573), FIS_ECOK1 (A1AGG1), FIS_ECOL5 (Q0TCJ5), FIS_ECOL6 (P0A6R4), FIS_ECOLC (B1IQ31), FIS_ECOLI (P0A6R3), FIS_ECOLU (B7NDN9), FIS_ECOSE (B6I1Y1), FIS_ECOSM (B1LGM6), FIS_ECOUT (Q1R667), FIS_EDWI9 (C5BEX0), FIS_ENT38 (A4WF77), FIS_ERWT9 (B2VL73), FIS_ESCF3 (B7LRN6), FIS_GLAP5 (B8F6J8), FIS_HAEDU (Q7VNP1), FIS_HAEI8 (Q4QLT0), FIS_HAEIE (A5UD91), FIS_HAEIG (A5UIB9), FIS_HAEIN (P44966), FIS_HISS1 (Q0I1Y8), FIS_HISS2 (B0UV86), FIS_KLEP7 (A6TES8), FIS_KLEPN (O52537), FIS_KLEV3 (B5XND7), FIS_MANHA (O54367), FIS_MANSM (Q65V72), FIS_PASMU (P57902), FIS_PECAS (Q6DAJ8), FIS_PECCA (O52540), FIS_PECCP (C6DIJ6), FIS_PHOLL (Q7N015), FIS_PHOPR (Q6LLY3), FIS_PROHU (P0CW84), FIS_PROMH (B4EX21), FIS_PROVU (P0CW85), FIS_PSYIN (A1SZI8), FIS_SALA4 (B5F7P5), FIS_SALAR (A9MN98), FIS_SALCH (Q57J83), FIS_SALDC (B5FIW4), FIS_SALEP (B5R1C8), FIS_SALG2 (B5REY3), FIS_SALHS (B4TJV9), FIS_SALNS (B4SUP1), FIS_SALPA (Q5PJW3), FIS_SALPB (A9N889), FIS_SALPC (C0PZT1), FIS_SALPK (B5BGT9), FIS_SALSV (B4TX93), FIS_SALTI (P0A6R7), FIS_SALTY (P0A6R6), FIS_SERMA (P0A6R9), FIS_SERP5 (A8GK78), FIS_SHEAM (A1SAM2), FIS_SHEB2 (B8E682), FIS_SHEB5 (A3D9J7), FIS_SHEB8 (A6WTE7), FIS_SHEB9 (A9L5E7), FIS_SHEDO (Q12S40), FIS_SHEFN (Q088K0), FIS_SHEHH (B0TJ39), FIS_SHELP (A3Q9Q3), FIS_SHEON (Q8EJR9), FIS_SHEPA (A8GZI0), FIS_SHEPC (A4YB21), FIS_SHEPW (B8CHY1), FIS_SHESA (A0KS72), FIS_SHESH (A8G0V0), FIS_SHESM (Q0HN88), FIS_SHESR (Q0HQJ9), FIS_SHESW (A1RFA1), FIS_SHEWM (B1KQE6), FIS_SHIB3 (B2U2N7), FIS_SHIBS (Q31W07), FIS_SHIDS (Q32B77), FIS_SHIF8 (Q0T029), FIS_SHIFL (P0A6R8), FIS_SHISS (Q3YWY8), FIS_SODGM (Q2NWQ0), FIS_TOLAT (C4LAF3), FIS_VIBA3 (B7VM54), FIS_VIBC1 (A7N080), FIS_VIBC3 (A5F3S1), FIS_VIBCH (P64127), FIS_VIBCM (C3LQP6), FIS_VIBPA (P64128), FIS_VIBVU (P64129), FIS_VIBVY (Q7MGT8), FIS_YERE8 (A1JRL7), FIS_YERP3 (A7FDQ0), FIS_YERPA (Q1C1P4), FIS_YERPB (B2K469), FIS_YERPE (Q8ZAX8), FIS_YERPG (A9R1Z3), FIS_YERPN (Q1CDT5), FIS_YERPP (A4THB7), FIS_YERPS (Q665E1), FIS_YERPY (B1JKF0), FLBD_CAUVC (P17899), FLEQ_PSEAE (G3XCV0), FLER_PSEAE (Q9I4N3), GLRR_ECOLI (P0AFU4), HOXA_BRADU (P31908), HOXA_CUPNH (P29267), HRPR_PSESY (P37930), HRPS_PSESH (P26316), HRPS_PSESY (P37931), HUPR_RHOCA (P26408), HYFR_ECOLI (P71229), LIHY_GEOSE (O85057), LUXO_VIBC1 (A7MVC2), LUXO_VIBC3 (O87455), LUXO_VIBCH (Q9KT84), LUXO_VIBHA (P0C5S5), LUXO_VIBPA (Q87MX7), LUXO_VIBVU (Q8CWJ5), LUXO_VIBVY (Q7MM78), MIMR_MYCGD (G3XGC1), MIMR_MYCS2 (A0QTU7), MOPR_ACIGI (Q43965), NIFA_AZOBR (P30667), NIFA_AZOC5 (P09133), NIFA_AZOCH (P56269), NIFA_AZOLI (P54929), NIFA_AZOVI (P09570), NIFA_BRADU (P05407), NIFA_ENTAG (P54930), NIFA_HERSE (P27713), NIFA_KLEOX (P56266), NIFA_KLEPN (P03027), NIFA_RHIEC (P54931), NIFA_RHILE (P09828), NIFA_RHILT (P24426), NIFA_RHIME (P03028), NIFA_RHOCA (P0CY94), NIFA_RHOCB (D5ARW9), NIFA_SINFN (Q53206), NORR1_CUPNH (Q9K4V0), NORR2_CUPNH (Q9K4U8), NORR_AERHH (A0KEJ0), NORR_AERS4 (A4STH5), NORR_ALIF1 (Q5E3W8), NORR_CITK8 (A8ANR6), NORR_ECO24 (A7ZQD8), NORR_ECO27 (B7UHC1), NORR_ECO45 (B7MKH8), NORR_ECO55 (B7LEC0), NORR_ECO57 (Q8X854), NORR_ECO5E (B5Z370), NORR_ECO7I (B7NSI9), NORR_ECO81 (B7MZ04), NORR_ECO8A (B7M9E6), NORR_ECOBW (C4ZYV4), NORR_ECODH (B1XCN6), NORR_ECOHS (A8A3I6), NORR_ECOK1 (A1AEP9), NORR_ECOL5 (Q0TEH1), NORR_ECOL6 (Q8FEN6), NORR_ECOLC (B1IUX0), NORR_ECOLI (P37013), NORR_ECOLU (B7N6T9), NORR_ECOSE (B6I695), NORR_ECOSM (B1LQ27), NORR_ECOUT (Q1R7Z1), NORR_ENT38 (A4WDR5), NORR_ESCF3 (B7LW25), NORR_KLEP7 (A6TCX4), NORR_KLEV3 (B5XVA2), NORR_PECAS (Q6D8R9), NORR_SALA4 (B5F363), NORR_SALAR (A9MFX7), NORR_SALCH (Q57KT4), NORR_SALDC (B5FSZ0), NORR_SALEP (B5QV88), NORR_SALG2 (B5RDG4), NORR_SALHS (B4TF23), NORR_SALNS (B4T3B0), NORR_SALPA (Q5PF20), NORR_SALPB (A9N0D7), NORR_SALPC (C0PWN2), NORR_SALSV (B4TT16), NORR_SALTI (Q8Z4C6), NORR_SALTY (Q8ZMJ8), NORR_SERP5 (A8GG93), NORR_SHIBS (Q31X73), NORR_SHIDS (Q32CL9), NORR_SHIF8 (Q0T1D4), NORR_SHIFL (P59402), NORR_SHISS (Q3YYF5), NORR_VIBVU (Q8D4F9), NORR_VIBVY (Q7MFY9), NTRC_AZOBR (P45671), NTRC_AZOC5 (Q04848), NTRC_BRASR (P10576), NTRC_ECO57 (P0AFB9), NTRC_ECOLI (P0AFB8), NTRC_KLEPN (P03029), NTRC_PROHU (P28787), NTRC_RHIME (P10577), NTRC_RHOCB (P09432), NTRC_SALTY (P41789), NTRXL_RICBR (Q1RJS1), NTRXL_RICCN (Q92HC2), NTRXL_RICFE (Q4UL27), NTRXL_RICPR (Q9ZCY9), NTRXL_RICTY (Q68WH4), NTRX_AZOC5 (Q04849), PGTA_SALTY (P06184), PILR_PSEAE (Q00934), PRPR_ECOLI (P77743), PRPR_SALTY (P74839), PSPF_ECOLI (P37344), QSEF_ECO57 (P0AFU5), REGA_CERS4 (Q53228), REGA_RHOCA (P42508), REGA_RHOSU (O82868), ROCR_BACSU (P38022), SFNR_PSEPF (Q3K999), SFNR_PSEPU (Q845S7), STC_CLOBE (P26047), TYRR_CITBR (O54426), TYRR_ECOLI (P07604), TYRR_ENTAG (Q9ZIB7), TYRR_HAEIN (P44694), TYRR_SALTI (P0A2D8), TYRR_SALTY (P0A2D7), UACR_ECOLI (Q46802), VASH_VIBCH (Q9KN48), VNFA_AZOVI (P12627), WTSA_PANSE (P36219), XYLR_PSEPU (P06519), Y4PA_SINFN (P55610), YHYA_PSESN (Q01265), YQIR_BACSU (P54529), ZRAR_ECO57 (Q8X613), ZRAR_ECOLI (P14375), ZRAR_KLEOX (Q9APD9), ZRAR_SALTI (Q8Z333), ZRAR_SALTY (P25852)» more
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| PDB [Detailed view] |
39 PDB
pdb_00001etk; pdb_00001eto; pdb_00001etq; pdb_00001etv; pdb_00001etw; pdb_00001etx; pdb_00001ety; pdb_00001f36; pdb_00001fia; pdb_00001fip; pdb_00001g2h; pdb_00001ntc; pdb_00001ojl; pdb_00001umq; pdb_00003fis; pdb_00003iv5; pdb_00003jr9; pdb_00003jra; pdb_00003jrb; pdb_00003jrc; pdb_00003jrd; pdb_00003jre; pdb_00003jrf; pdb_00003jrg; pdb_00003jrh; pdb_00003jri; pdb_00004fis; pdb_00005ds9; pdb_00005dtd; pdb_00005e3l; pdb_00005e3m; pdb_00005e3n; pdb_00005e3o; pdb_00005exx; pdb_00006m10; pdb_00006p0s; pdb_00006p0t; pdb_00006p0u; pdb_00008p53 » more |