PROSITE entry PS51862
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General information about the entry
Entry name [info] | BSPN_CSAB |
Accession [info] | PS51862 |
Entry type [info] | MATRIX |
Date [info] |
20-JUN-2018 CREATED;
07-APR-2021 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
PROSITE Doc. [info] | PDOC51862 |
Associated ProRule [info] | PRU01209 |
Name and characterization of the entry
Description [info] | BetaSPN-type cysteine-stabilized alpha/beta (CS-alpha/beta) domain profile. |
Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=37; /DISJOINT: DEFINITION=PROTECT; N1=4; N2=34; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.5954342; R2=0.0068160; TEXT='-LogE'; /NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=1355.9521484; R2=3.6597052; PRIORITY=1; TEXT='Heuristic 5.0%'; /CUT_OFF: LEVEL=0; SCORE=867; H_SCORE=4529; N_SCORE=8.5; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=573; H_SCORE=3453; N_SCORE=6.5; MODE=1; TEXT='?'; /DEFAULT: M0=-10; D=-50; I=-50; B1=-500; E1=-500; MI=-105; MD=-105; IM=-105; DM=-105; ... A B C D E F G H I K L M N P Q R S T V W Y Z /I: B1=0; BI=-105; BD=-105; /M: SY='E'; M=-11, 9,-30, 15, 42,-33,-19, 6,-27, 9,-21,-13, 2, -5, 32, 3, 0,-10,-30,-27,-16, 37; /M: SY='Y'; M=-15,-16,-24,-19,-15, 24,-25, 3, -2,-14, 1, -1,-13,-25,-10,-11,-12, -5, -8, 7, 40,-14; /M: SY='G'; M= 11,-14,-22,-18,-16,-14, 21,-18,-17,-17, -9, -5, -9,-17,-14,-18, -3,-11,-12,-19,-17,-15; /M: SY='C'; M=-10,-20,120,-30,-30,-20,-30,-30,-30,-30,-20,-20,-20,-40,-30,-30,-10,-10,-10,-50,-30,-30; /M: SY='P'; M= -4,-20,-31,-17, -8,-19,-20,-18, -7,-12,-14, -2,-20, 49,-10,-19,-11, -9,-13,-26,-21,-12; /M: SY='F'; M= 2,-25,-16,-31,-25, 20,-22,-23, 12,-22, 9, 6,-21,-25,-26,-20,-12, -5, 17,-14, 1,-24; /I: I=-12; MI=0; MD=-25; IM=0; DM=-25; /M: SY='I'; M= -8,-24,-23,-30,-24, 1,-31,-19, 25,-19, 9, 13,-20,-20,-17,-18,-14, -3, 20,-14, 5,-23; /M: SY='E'; M= -5, 2,-24, 5, 18,-23,-12, -7,-19, 2,-17,-13, 1, -9, 6, -1, 3, -3,-15,-29,-17, 12; /M: SY='K'; M= -5, 0,-27, 0, -1,-29, 14,-12,-32, 15,-30,-15, 4,-14, -1, 5, 1,-10,-23,-24,-19, -1; /M: SY='W'; M=-16,-22,-32,-25,-21, 17,-21,-12, -8,-16, -4, -3,-20,-26,-15,-14,-23,-16,-14, 49, 25,-16; /M: SY='C'; M=-10,-20,120,-30,-30,-20,-30,-30,-30,-30,-20,-20,-20,-40,-30,-30,-10,-10,-10,-50,-30,-30; /M: SY='E'; M=-10, 16,-28, 20, 36,-29,-14, 0,-28, 10,-23,-18, 10, -6, 15, 1, 2, -8,-28,-31,-18, 25; /M: SY='D'; M=-13, 22,-28, 30, 13,-30,-14, -2,-30, 8,-24,-17, 9,-11, 10, 2, -2, -7,-25,-26,-13, 12; /M: SY='H'; M=-14, -1,-28, 0, 0,-21,-16, 54,-27, -9,-23, -8, 5, -1, 3, -5, -3,-11,-26,-31, 3, -2; /M: SY='C'; M=-10,-20,120,-30,-30,-20,-30,-30,-30,-30,-20,-20,-20,-40,-30,-30,-10,-10,-10,-50,-30,-30; /M: SY='Q'; M= -3, -2,-26, -3, 10,-28, -4, -4,-21, 5,-17, -5, -2,-12, 17, 1, -2, -9,-21,-22,-15, 14; /I: I=-15; MI=0; MD=-32; IM=0; DM=-32; /M: SY='A'; M= 13, -9,-17,-15, -6,-16,-12,-15, -8, -7, -8, -7, -6,-13, -4, -5, 7, 6, -3,-25,-14, -6; /M: SY='K'; M= -7, -3,-25, -2, 11,-22,-14,-10,-20, 16,-15, -7, -4,-12, 4, 7, -4, -6,-15,-25,-13, 7; /M: SY='K'; M= -8, 7,-27, 5, 4,-28, -2, -3,-29, 21,-28,-14, 11,-14, 5, 13, -2, -9,-24,-25,-15, 5; /M: SY='K'; M= 8, -3,-22, -6, 6,-24,-12, -3,-17, 9,-16, -4, -3,-11, 9, 1, 0, -6,-14,-23,-12, 7; /M: SY='E'; M= -8, -6,-26, -6, 4,-18,-24,-15, -2, 4, -8, -3, -7,-13, -2, -4, -7, -7, -1,-25,-10, -1; /M: SY='G'; M= 0,-10,-30,-10,-20,-30, 70,-20,-40,-20,-30,-20, 0,-20,-20,-20, 0,-20,-30,-20,-30,-20; /M: SY='K'; M=-12, -6,-27, -7, 0, -5,-23, -1,-13, 11,-14, -6, -4,-18, 0, 5,-10, -9,-12,-11, 10, -1; /M: SY='C'; M=-10,-20,120,-30,-30,-20,-30,-30,-30,-30,-20,-20,-20,-40,-30,-30,-10,-10,-10,-50,-30,-30; /M: SY='H'; M=-16, 11,-29, 17, 20,-26,-18, 52,-31, -3,-22,-11, 9,-13, 11, -2, -4,-14,-29,-32, 1, 12; /M: SY='G'; M= 4, -2,-24, -4,-13,-22, 32,-15,-27,-16,-18,-15, 2,-18,-15,-17, 0,-12,-20,-23,-22,-14; /M: SY='T'; M= -6,-11,-14,-20,-16, 12,-23,-18, -2,-16, 3, 1, -9,-17,-16,-13, 3, 25, 2,-20, 0,-15; /M: SY='K'; M=-11, 7,-30, 11, 25,-30,-19, -6,-30, 34,-27,-14, 3, -7, 12, 18, -6,-10,-24,-25,-14, 19; /M: SY='C'; M=-10,-20,120,-30,-30,-20,-30,-30,-30,-30,-20,-20,-20,-40,-30,-30,-10,-10,-10,-50,-30,-30; /M: SY='K'; M= -7, -1,-27, -2, 7,-26,-19,-11,-23, 35,-25, -9, 0,-11, 7, 20, -5, -6,-15,-23,-11, 7; /M: SY='C'; M=-10,-20,120,-30,-30,-20,-30,-30,-30,-30,-20,-20,-20,-40,-30,-30,-10,-10,-10,-50,-30,-30; /M: SY='G'; M= -3, -8,-23, -8, -9,-16, 9,-15,-13,-16, -4, -5, -6,-19,-12,-15, -4, -8,-10,-26,-17,-11; /M: SY='T'; M= -6,-11,-22,-15, -9,-15,-24,-19, 1, 3, -9, -1, -9, -9, -7, -3, -4, 5, 5,-25,-10, -9; /M: SY='P'; M= -8,-17,-29,-13, -3,-16,-22,-17, -7,-11, -1, -4,-18, 26, -9,-15,-13, -9,-13,-26,-17, -8; /M: SY='P'; M= -9,-18,-27,-17,-10,-12,-15,-16, -3,-15, 3, 1,-15, 11,-12,-13,-13, -9, -9,-25,-15,-13; /M: SY='E'; M= -2, 6,-23, 9, 18,-27, 2, -7,-28, 2,-26,-19, 7, -9, 5, -4, 11, -2,-23,-31,-20, 11; /M: SY='Y'; M=-18,-19,-28,-20,-18, 29,-28, 12, -3, -7, -3, -2,-17,-28,-11, -8,-17, -9,-10, 21, 63,-18; /I: E1=0; IE=-105; DE=-105;» more |
Numerical results [info]
Total number of hits | 39 in 39 different sequences |
Number of true positive hits | 39 in 39 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 0 |
Number of false negative sequences | 0 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 100.00 % |
Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
Taxonomic range [info] | Eukaryotes |
Maximum number of repetitions [info] | 1 |
Matrix type [info] | protein_domain |
Scaling database [info] | reversed |
Author [info] | CJA_Sigrist |
Feature key [info] | DOMAIN |
Feature description [info] | BetaSPN-type CS-alpha/beta |
Version [info] | 4 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
39 sequences
KA11N_SCOPC (P0DQN4), KBX11_LYCMC (P0CI49), KBX11_MESEU (A9XE60), KBX12_MESEU (A9XE59), KBX17_LYCMC (D9U2A7), KBX1_ANDAU (P69939), KBX1_BUTIS (B8XH40), KBX1_MESGB (A0A059UI30), KBX1_MESMA (Q9N661), KBX1_TITCO (Q5G8A6), KBX1_TITDI (Q0GY44), KBX1_TITSE (P69940), KBX1_TITST (P0C2F3), KBX1_TITTR (Q0GY46), KBX21_LYCMC (P0CJ45), KBX22_LYCMC (D9U2B1), KBX23_LYCMC (P0CI42), KBX27_LYCMC (C6ZH27), KBX2_HOFGE (Q0GY41), KBX2_LIOAU (C7G3K3), KBX2_MESMA (Q9NJC6), KBX2_TITCO (Q0GY42), KBX2_TITSE (P86822), KBX2_TITST (P0C8W4), KBX2_TITTR (Q0GY45), KBX31_OPICA (Q5WR03), KBX31_UROYA (L0G8Z0), KBX32_HOFGE (P0C8W5), KBX32_OPICA (Q5WR01), KBX32_UROYA (L0GCW2), KBX33_OPICA (Q5WQZ7), KBX34_OPICA (Q5WQZ9), KBX3_EUSVA (P0DL47), KBX3_HETLA (P0C2F4), KBX3_HOFGE (Q0GY40), KBX3_OPICY (C5J891), KBX3_PANIM (P56972), KIK2_TITDI (Q0GY43), NDB51_MESEU (P0CH57)» more
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PDB [Detailed view] |
6 PDB
5IPO; 5JYH; 7LGL; 7LGV; 7M1D; 7WKF |