PROSITE documentation PDOC00474

Ribosomal protein S3 signature

Description:

Ribosomal protein S3 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S3 is known to be involved in the binding of initiator Met-tRNA. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [1], groups:

  • Eubacterial S3.
  • Algal and plant chloroplast S3.
  • Cyanelle S3.
  • Archaebacterial S3.
  • Plant mitochondrial S3.
  • Vertebrate S3.
  • Insect S3.
  • Caenorhabditis elegans S3 (C23G10.3).
  • Yeast S3 (Rp13).

S3 is a protein of 209 to 559 amino-acid residues. As signature patterns, we selected a conserved region located in the C-terminal section.

Expert(s) to contact by email:

Hallick R.B.

Last update:

December 2001 / Pattern and text revised.

Technical section:

PROSITE method (with tools and information) covered by this documentation:

RIBOSOMAL_S3, PS00548Ribosomal protein S3 signature  (PATTERN)
Consensus pattern: [GSTA]-[KR]-x(6)-G-x-[LIVMT]-x(2)-[NQSCH]-x(1,3)-[LIVFCA]-x(3)-[LIV]-[DENQ]-x(7)-[LMT]-x(2)-G-x(2)-[GS]
Sequences known to belong to this class detected by the pattern: ALL, except for some mitochondrial S3
Other sequence(s) detected in Swiss-Prot: NONE.
• Retrieve an alignment of Swiss-Prot true positive hits:
  Clustal format, color, condensed view  / Clustal format, color  / Clustal format, plain text  / Fasta format
Retrieve the sequence logo from the alignment
Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS00548
Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS00548
Scan Swiss-Prot/TrEMBL entries against PS00548
view ligand binding statistics
Matching PDB structures: 1FJG 1GIX 1HNW 1HNX ... [ALL]

Reference:

1 AuthorsOtaka E., Hashimoto T., Mizuta K.
SourceProtein Seq. Data Anal. 5:285-300(1993).

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